Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00131 ATGAAAGAGACCGATATAATGGAAAAGCCCATCGCCGCCGGCCTCTCAAATTCCGGCAACCACCACCAAAAGCCCAAAAACAAATCAAAAAAGCTTCTAATTTTAGCCCTGTCTTCGACCCTGCTCCTGGTCGGCGCCGTCGTGGGGATCGTCGCCGGAGTGACGAAATCGGAAAACTCCGGGAAATCACACGCCATTGTGAAGAGCACGTGCAGCAGCACGCTTTACCCGGATCTGTGCTTTTCTGCAATTTCGAATAGTGAAGGGGCTATGTTGAAAGTTAGTAATCAAAAGGATGTGATTGAGGTGTCAATTAATATAACGGTGAAAGCTGTGGAAGATAATTACTTTAGAGTGAAGAAATTGTGTGGGTTGAAGAATATTAGCCATAGAGAGAAAATTGCTCTTCATGATTGTCTTGAGACAATTGATGAGACGCTTGATGAACTTCATAAAGCTATTGTGGACCTTCATCAATACCCCAATAAAAAGTCTCTTAATCAACACGCTGATGATCTTAAAACCTTGCTTAGTTCCGCCATTACCAATCAGGAGACATGCCTCGATGGGTTTTCACACGACGAGGCAGACAAAAACCTGAGGGATAAGCTAAAAGAGGGGCAAGAGGAAGTAGAACACATGTGCAGCAATGCATTAGCCATGATTAAGAACATGACAGATACAGACATAGCCAACTACGAGGCTAAAATGGGAACAACCAACAATAGAAAGCTCAAGGAAGAACAGAACAACGGCGACGGCATCCAGTGGCCGGAGTGGCTGTCGGCCGGAGACCGGCGGCTGCTTCAGTCGTCGTCCGTGGAGCCAGATGTGGTGGTGGCGGCGGACGGCAGTGGGAACTTCCGGACGGTGGCGGCCGCCGTGGCGGCGGCGCCGGAAAAAAGTAGCAAGAGATATGTGATAAGAATTAAAGCTGGGGTTTATAGAGAAAATGTGGAAGTGCCGAAGAAGAAAACGAATATTATGTTTATGGGAGATGGAAGACGTAACACTATAATTACCGGCAGCCGGAATGTGGTCGACGGCAGCACCACTTTTAACTCTGCAACCGTCGCTGCGGTGGGAGGAGGATTTCTAGCGCGTGACATCACATTCCAAAACACAGCCGGTCCGTCGAAGCACCAAGCGGTGGCTCTCCGTGTCGGAGCAGATCTCTCCGCCTTCTACCAATGCGACATGTTGGCTTATCAAGACACTCTCTACGTCCACTCCAACCGTCAATTCTACATCAACTGTCTCATCTCCGGCACCGTCGATTTCATCTTCGGCAACGCTGCCGCCATTTTCCAAGACTGCGACATTCACGCGCGCAAACCAAACTCAGGTCAGAAAAACATGGTCACGGCCCAAGGACGGTCCGACCCGAACCAAAACACCGGAATCGTTATCCAGAAATGCCGGATCGGTGCCACGTCGGATCTCCGACCGGTCCAGAAGAACTTCCCGACGTTCCTTGGAAGGCCGTGGAAGGAATATTCGAGAACGGTGATTATGCAGTCAACGATTAGTGACGTCATTGACCCGAAGGGATGGCATGAGTGGAGCGGTAATTTTGCACTTAACACGTTGTTTTACGGTGAGTATCAGAATACTGGACCGGGGGCTTCAACCGGGGGGAGAGTGACGTGGAAGGGATTTAGGGTAATTCGGAGTGCCACGGAGGCTGAAAGTTTTACCGCAGGTAAATTCATTGGCGGTGGGAGTTGGTTGCGCTCTACTGGCTTTCCTTTCTCTCTAGGATTATGA 1767 49.63 MKETDIMEKPIAAGLSNSGNHHQKPKNKSKKLLILALSSTLLLVGAVVGIVAGVTKSENSGKSHAIVKSTCSSTLYPDLCFSAISNSEGAMLKVSNQKDVIEVSINITVKAVEDNYFRVKKLCGLKNISHREKIALHDCLETIDETLDELHKAIVDLHQYPNKKSLNQHADDLKTLLSSAITNQETCLDGFSHDEADKNLRDKLKEGQEEVEHMCSNALAMIKNMTDTDIANYEAKMGTTNNRKLKEEQNNGDGIQWPEWLSAGDRRLLQSSSVEPDVVVAADGSGNFRTVAAAVAAAPEKSSKRYVIRIKAGVYRENVEVPKKKTNIMFMGDGRRNTIITGSRNVVDGSTTFNSATVAAVGGGFLARDITFQNTAGPSKHQAVALRVGADLSAFYQCDMLAYQDTLYVHSNRQFYINCLISGTVDFIFGNAAAIFQDCDIHARKPNSGQKNMVTAQGRSDPNQNTGIVIQKCRIGATSDLRPVQKNFPTFLGRPWKEYSRTVIMQSTISDVIDPKGWHEWSGNFALNTLFYGEYQNTGPGASTGGRVTWKGFRVIRSATEAESFTAGKFIGGGSWLRSTGFPFSLGL 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1312134 1317574 - ClCG09G001400.1 Cla09g00131 279551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00131 588 Gene3D Invertase/pectin methylesterase inhibitor family protein 62 226 IPR035513 -
Cla09g00131 588 TIGRFAM PME_inhib: pectinesterase inhibitor domain 38 225 IPR006501 GO:0004857
Cla09g00131 588 MobiDBLite consensus disorder prediction 1 25 - -
Cla09g00131 588 CDD PMEI-like_3 69 226 - -
Cla09g00131 588 PANTHER PECTINESTERASE 28 587 - -
Cla09g00131 588 Pfam Pectinesterase 277 573 IPR000070 GO:0030599|GO:0042545
Cla09g00131 588 ProSitePatterns Pectinesterase signature 2. 421 430 IPR033131 -
Cla09g00131 588 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 66 226 IPR035513 -
Cla09g00131 588 Gene3D - 271 588 IPR012334 -
Cla09g00131 588 SUPERFAMILY Pectin lyase-like 274 587 IPR011050 -
Cla09g00131 588 Pfam Plant invertase/pectin methylesterase inhibitor 66 221 IPR006501 GO:0004857
Cla09g00131 588 PANTHER PECTINESTERASE 28 587 - -
Cla09g00131 588 SMART PMEI_2 62 221 IPR006501 GO:0004857
Cla09g00131 588 ProSitePatterns Pectinesterase signature 1. 302 321 IPR018040 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00463 Cla-Chr6:5642876 Cla09g00131 Cla-Chr9:1312134 9.24E-140 dispersed
Cla09g00131 Cla-Chr9:1312134 Cla09g00512 Cla-Chr9:4846710 0 dispersed
Cla11g00019 Cla-Chr11:260639 Cla09g00131 Cla-Chr9:1312134 4.90E-143 dispersed
Cla01g02159 Cla-Chr1:35741531 Cla09g00131 Cla-Chr9:1312134 1.48E-155 transposed
Cla09g00813 Cla-Chr9:8308978 Cla09g00131 Cla-Chr9:1312134 0 transposed
Cla07g01358 Cla-Chr7:30728436 Cla09g00131 Cla-Chr9:1312134 1.38E-32 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00131 K01051 - csv:101212388 1034.25