Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00135 ATGACTTATCTCAAATTTGATTTGACTTTGTCAAAGGCCAATGGTAATGGTGTCTCACCATTGACAGAGAGCGAGAGAGCGAGTGAGATTCAGGAAAAGAGGGTGGTTGATTTGAGGCTCTCATTCCTGTTCCGGGCTGGGAAGAGGATGGATTGGAGGTGGAGGGAGCTGATATCTCTCATCATTCTCTGCATTCTAGGGTGGAAGCCTAGCTGCATTCAAGGAACCACAGATCCAACAGATGCCTCTGCTTTAAGGGTTTTGTACACCAGTTTAAACTCGCCCTCTCAGTTAACCCAGTGGAACGCAAATGGCGATGATCCTTGTGGACAATCATGGAAGGGAATTACTTGCTCCGGCTCACGGGTTACAGAAATAAACTTATCTGGCCTTGGACTCAGTGGATCGCTCGGATACCAGCTTGGAAGTATGACATCGGTAACCAACCTGGATGTGAGTAGTAACAATTTTGGAGGCGAGATTGTCTACAACCTTCCACCTAATCTAAAAAGACTAAATCTTGCACGAAACAACTTCAATAAAGGCATTCCTTATTCCGTTTCATTGATGACTTCTCTTCAATACTTAAATATCAGTCATAATCAGCTTCAGGATCCATTGAATGATGTGTATGGGCAGCTAACTTCCCTATCCACATTGGATCTATCTTTCAATGCTATGTCAGGCAACCTGCCTCAGAGTTTTAGCTCTCTTTCTAGCATCAGCACTATGTATTTGCAAAACAATCAGTACACTGGCACAATTGATGTCCTTGCAACTCTACCTCTTAATAACCTGAATGTTGAAAATAACCGTTTCACCGGATGGATCCCTGAACAACTGAAAAACATCAATCTGCAGACAAATGGCAACTCTTGGAACTCCGGTCCTGCACCCCCTCCTCCACCTGGTACACCCCCAGCCACCAGAAGAAACCGAAATCAACATTCAGGTGGCAGTCCATCAAATGGTGGTTCTAGTGAAGGTCAGAAATCAGGAATTAGTGGTGGTGGCATTGCAGGGATTATCATCTCCGTGCTCGTCGTTGGAGCTGTAGTAGCATTCTTCCTCGTCAAGAGGAGATCCAAGAGATCATCTACAGATATTGAAAAGCTCGACAATCAACCCCTGCAACCTCTTAAAGTGACTGCAGCACAAGGTCATCTTATACATTATGAGATTGCATCTATACTTACATTGAAAATTCTTACTTTCGAGAGAAAGATATTCTGTCTTAATTCAAATATGCGCATCCCTGCTCTTTTTGATATGAGAGAGGTGGTCAAGAAAGAACATTTGAGTTTACAGTTTACAGTTGAGTTTTCTGCTCCATACCTGTTCGGCCTATTTTTCGGTGCCCAGAATAAACTAAAAACTTTAAATGTTAGGATGTCATGCGGAAACATTTTTTTCTTTTTCCAGGTTGCTCCTGTTTTCAAATATTGTTATGCAGAAACAAAGTCAGAAGAGACTTCCTCCACATTTTATCCAACATCATTTGACACTTCTGCTGCAATAAATCTTAAACCCCCACCTATCGATCGTCATAAATCATTTGATGAAGACGACTTCTCAAAACGAGCTGCAGTCAAGAAGGCTAGTGCTGCAGCTCCCATTAATGTAAAGTCATATTCCATAGCAGACCTTCAAATTGCTACAGGCAGCTTCAATGTTGAAAATCTTCTTGGTGAGGGATCATTTGGACGTGTATATCGGGCTGAGTTTGACGACGGGAAGGTTCTTGCCGTGAAAAAGATAAATTCATCTGCACTACCTAGGGAATTATCTGAAGATTTCACTGACATTGTTTCTAAAGTCTCCCAGTTACACCATCCCAATATAACTGAACTCGTGGGTTATTGCTTAGAGCATGGGCAGCATTTGCTTGTGTATGAGTTCCACAAAAATGGTTCGCTTTACGACTTATTACATCTATCAGATGAATACAACAAACCTCTGATATGGAACTCACGCATTAAGATTGCTTTGGGAACAGCGCGAGCATTGGAGTATCTTCACGAAGTGTGCTCCCCATCTATTGTTCATAGAAACGTCAAGTCTGCTAACATATTGTTAGATGCCGAACTCAGCCCCCACCTTTCTGACTCTGGACTGGAAAGCTTTGTACCAAATGCAGATCAGGTCAATCTTGAACTTAATAAATCTTATTTTTTCCGTGTCGTATACTTCAATATACAAATACACATTAATGTAATGTTTACCTTATTCTTAAAGTCTTCGAAGAGAAAAATCTGTATCAAAAAAATTTCCGAGGGTGCGTTGGATGGCAGTGCAAGTTCAGGATATGCTGCCCCGGAAGTTACCATGTCCGGTCAATATACTCTGCAAAGTGACGTTTACAGTTTTGGAGTAGTCATGTTGGAACTGCTGACTGGACGCAAACCATTCGACAGTTCAAGGGCGAGGATGGAGCAATCTTTGGTTCGATGGGCAACACCTCAGCTTCATGACATTGATGCTTTGACCAAGATGGTTGATCCCGAACTCAAAGGCCTTTACCCCGTTAAATCTCTCTCCCGATTTGCAGATGTGATTGCACTTTGCGTTCAGACGGAACCTGAGTTCAGACCTCCAATGTCGGAGGTGGTCGAAGCGTTGGTCCGTTTGGTGCAGCGAGCAAACATGAGTAAGAGAACATATGGAAATGATAATGCAACATCTCCGAGAGGGGAGATGGGTGGGGAGGACACGCCATAA 2718 42.83 MTYLKFDLTLSKANGNGVSPLTESERASEIQEKRVVDLRLSFLFRAGKRMDWRWRELISLIILCILGWKPSCIQGTTDPTDASALRVLYTSLNSPSQLTQWNANGDDPCGQSWKGITCSGSRVTEINLSGLGLSGSLGYQLGSMTSVTNLDVSSNNFGGEIVYNLPPNLKRLNLARNNFNKGIPYSVSLMTSLQYLNISHNQLQDPLNDVYGQLTSLSTLDLSFNAMSGNLPQSFSSLSSISTMYLQNNQYTGTIDVLATLPLNNLNVENNRFTGWIPEQLKNINLQTNGNSWNSGPAPPPPPGTPPATRRNRNQHSGGSPSNGGSSEGQKSGISGGGIAGIIISVLVVGAVVAFFLVKRRSKRSSTDIEKLDNQPLQPLKVTAAQGHLIHYEIASILTLKILTFERKIFCLNSNMRIPALFDMREVVKKEHLSLQFTVEFSAPYLFGLFFGAQNKLKTLNVRMSCGNIFFFFQVAPVFKYCYAETKSEETSSTFYPTSFDTSAAINLKPPPIDRHKSFDEDDFSKRAAVKKASAAAPINVKSYSIADLQIATGSFNVENLLGEGSFGRVYRAEFDDGKVLAVKKINSSALPRELSEDFTDIVSKVSQLHHPNITELVGYCLEHGQHLLVYEFHKNGSLYDLLHLSDEYNKPLIWNSRIKIALGTARALEYLHEVCSPSIVHRNVKSANILLDAELSPHLSDSGLESFVPNADQVNLELNKSYFFRVVYFNIQIHINVMFTLFLKSSKRKICIKKISEGALDGSASSGYAAPEVTMSGQYTLQSDVYSFGVVMLELLTGRKPFDSSRARMEQSLVRWATPQLHDIDALTKMVDPELKGLYPVKSLSRFADVIALCVQTEPEFRPPMSEVVEALVRLVQRANMSKRTYGNDNATSPRGEMGGEDTP 905
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1379013 1386251 - ClCG09G001440.2 Cla09g00135 279555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00135 905 SUPERFAMILY L domain-like 77 283 - -
Cla09g00135 905 SUPERFAMILY Protein kinase-like (PK-like) 539 873 IPR011009 -
Cla09g00135 905 Gene3D Transferase(Phosphotransferase) domain 1 635 895 - -
Cla09g00135 905 MobiDBLite consensus disorder prediction 309 332 - -
Cla09g00135 905 Pfam Protein kinase domain 557 871 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g00135 905 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 6 758 898 - -
Cla09g00135 905 MobiDBLite consensus disorder prediction 287 332 - -
Cla09g00135 905 Pfam Leucine rich repeat N-terminal domain 79 119 IPR013210 -
Cla09g00135 905 ProSiteProfiles Protein kinase domain profile. 556 876 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g00135 905 PANTHER OS01G0253100 PROTEIN 68 718 IPR045271 GO:0004714|GO:0006468
Cla09g00135 905 MobiDBLite consensus disorder prediction 885 905 - -
Cla09g00135 905 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 6 68 718 - -
Cla09g00135 905 Gene3D Ribonuclease Inhibitor 78 305 IPR032675 -
Cla09g00135 905 Pfam Leucine Rich repeat 191 205 IPR001611 GO:0005515
Cla09g00135 905 Pfam Leucine Rich repeat 145 163 IPR001611 GO:0005515
Cla09g00135 905 PANTHER OS01G0253100 PROTEIN 758 898 IPR045271 GO:0004714|GO:0006468
Cla09g00135 905 Gene3D Phosphorylase Kinase; domain 1 519 633 - -
Cla09g00135 905 ProSitePatterns Protein kinases ATP-binding region signature. 562 585 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00126 Cla-Chr2:1403708 Cla09g00135 Cla-Chr9:1379013 1.13E-38 dispersed
Cla09g00135 Cla-Chr9:1379013 Cla10g01655 Cla-Chr10:32235033 3.35E-41 dispersed
Cla07g01353 Cla-Chr7:30688980 Cla09g00135 Cla-Chr9:1379013 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80781 PF00069 Pkinase 6.90E-35 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00135 - - qsu:112033551 582.793