Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00135 ATGACTTATCTCAAATTTGATTTGACTTTGTCAAAGGCCAATGGTAATGGTGTCTCACCATTGACAGAGAGCGAGAGAGCGAGTGAGATTCAGGAAAAGAGGGTGGTTGATTTGAGGCTCTCATTCCTGTTCCGGGCTGGGAAGAGGATGGATTGGAGGTGGAGGGAGCTGATATCTCTCATCATTCTCTGCATTCTAGGGTGGAAGCCTAGCTGCATTCAAGGAACCACAGATCCAACAGATGCCTCTGCTTTAAGGGTTTTGTACACCAGTTTAAACTCGCCCTCTCAGTTAACCCAGTGGAACGCAAATGGCGATGATCCTTGTGGACAATCATGGAAGGGAATTACTTGCTCCGGCTCACGGGTTACAGAAATAAACTTATCTGGCCTTGGACTCAGTGGATCGCTCGGATACCAGCTTGGAAGTATGACATCGGTAACCAACCTGGATGTGAGTAGTAACAATTTTGGAGGCGAGATTGTCTACAACCTTCCACCTAATCTAAAAAGACTAAATCTTGCACGAAACAACTTCAATAAAGGCATTCCTTATTCCGTTTCATTGATGACTTCTCTTCAATACTTAAATATCAGTCATAATCAGCTTCAGGATCCATTGAATGATGTGTATGGGCAGCTAACTTCCCTATCCACATTGGATCTATCTTTCAATGCTATGTCAGGCAACCTGCCTCAGAGTTTTAGCTCTCTTTCTAGCATCAGCACTATGTATTTGCAAAACAATCAGTACACTGGCACAATTGATGTCCTTGCAACTCTACCTCTTAATAACCTGAATGTTGAAAATAACCGTTTCACCGGATGGATCCCTGAACAACTGAAAAACATCAATCTGCAGACAAATGGCAACTCTTGGAACTCCGGTCCTGCACCCCCTCCTCCACCTGGTACACCCCCAGCCACCAGAAGAAACCGAAATCAACATTCAGGTGGCAGTCCATCAAATGGTGGTTCTAGTGAAGGTCAGAAATCAGGAATTAGTGGTGGTGGCATTGCAGGGATTATCATCTCCGTGCTCGTCGTTGGAGCTGTAGTAGCATTCTTCCTCGTCAAGAGGAGATCCAAGAGATCATCTACAGATATTGAAAAGCTCGACAATCAACCCCTGCAACCTCTTAAAGTGACTGCAGCACAAGGTCATCTTATACATTATGAGATTGCATCTATACTTACATTGAAAATTCTTACTTTCGAGAGAAAGATATTCTGTCTTAATTCAAATATGCGCATCCCTGCTCTTTTTGATATGAGAGAGGTGGTCAAGAAAGAACATTTGAGTTTACAGTTTACAGTTGAGTTTTCTGCTCCATACCTGTTCGGCCTATTTTTCGGTGCCCAGAATAAACTAAAAACTTTAAATGTTAGGATGTCATGCGGAAACATTTTTTTCTTTTTCCAGGTTGCTCCTGTTTTCAAATATTGTTATGCAGAAACAAAGTCAGAAGAGACTTCCTCCACATTTTATCCAACATCATTTGACACTTCTGCTGCAATAAATCTTAAACCCCCACCTATCGATCGTCATAAATCATTTGATGAAGACGACTTCTCAAAACGAGCTGCAGTCAAGAAGGCTAGTGCTGCAGCTCCCATTAATGTAAAGTCATATTCCATAGCAGACCTTCAAATTGCTACAGGCAGCTTCAATGTTGAAAATCTTCTTGGTGAGGGATCATTTGGACGTGTATATCGGGCTGAGTTTGACGACGGGAAGGTTCTTGCCGTGAAAAAGATAAATTCATCTGCACTACCTAGGGAATTATCTGAAGATTTCACTGACATTGTTTCTAAAGTCTCCCAGTTACACCATCCCAATATAACTGAACTCGTGGGTTATTGCTTAGAGCATGGGCAGCATTTGCTTGTGTATGAGTTCCACAAAAATGGTTCGCTTTACGACTTATTACATCTATCAGATGAATACAACAAACCTCTGATATGGAACTCACGCATTAAGATTGCTTTGGGAACAGCGCGAGCATTGGAGTATCTTCACGAAGTGTGCTCCCCATCTATTGTTCATAGAAACGTCAAGTCTGCTAACATATTGTTAGATGCCGAACTCAGCCCCCACCTTTCTGACTCTGGACTGGAAAGCTTTGTACCAAATGCAGATCAGGTCAATCTTGAACTTAATAAATCTTATTTTTTCCGTGTCGTATACTTCAATATACAAATACACATTAATGTAATGTTTACCTTATTCTTAAAGTCTTCGAAGAGAAAAATCTGTATCAAAAAAATTTCCGAGGGTGCGTTGGATGGCAGTGCAAGTTCAGGATATGCTGCCCCGGAAGTTACCATGTCCGGTCAATATACTCTGCAAAGTGACGTTTACAGTTTTGGAGTAGTCATGTTGGAACTGCTGACTGGACGCAAACCATTCGACAGTTCAAGGGCGAGGATGGAGCAATCTTTGGTTCGATGGGCAACACCTCAGCTTCATGACATTGATGCTTTGACCAAGATGGTTGATCCCGAACTCAAAGGCCTTTACCCCGTTAAATCTCTCTCCCGATTTGCAGATGTGATTGCACTTTGCGTTCAGACGGAACCTGAGTTCAGACCTCCAATGTCGGAGGTGGTCGAAGCGTTGGTCCGTTTGGTGCAGCGAGCAAACATGAGTAAGAGAACATATGGAAATGATAATGCAACATCTCCGAGAGGGGAGATGGGTGGGGAGGACACGCCATAA 2718 42.83 MTYLKFDLTLSKANGNGVSPLTESERASEIQEKRVVDLRLSFLFRAGKRMDWRWRELISLIILCILGWKPSCIQGTTDPTDASALRVLYTSLNSPSQLTQWNANGDDPCGQSWKGITCSGSRVTEINLSGLGLSGSLGYQLGSMTSVTNLDVSSNNFGGEIVYNLPPNLKRLNLARNNFNKGIPYSVSLMTSLQYLNISHNQLQDPLNDVYGQLTSLSTLDLSFNAMSGNLPQSFSSLSSISTMYLQNNQYTGTIDVLATLPLNNLNVENNRFTGWIPEQLKNINLQTNGNSWNSGPAPPPPPGTPPATRRNRNQHSGGSPSNGGSSEGQKSGISGGGIAGIIISVLVVGAVVAFFLVKRRSKRSSTDIEKLDNQPLQPLKVTAAQGHLIHYEIASILTLKILTFERKIFCLNSNMRIPALFDMREVVKKEHLSLQFTVEFSAPYLFGLFFGAQNKLKTLNVRMSCGNIFFFFQVAPVFKYCYAETKSEETSSTFYPTSFDTSAAINLKPPPIDRHKSFDEDDFSKRAAVKKASAAAPINVKSYSIADLQIATGSFNVENLLGEGSFGRVYRAEFDDGKVLAVKKINSSALPRELSEDFTDIVSKVSQLHHPNITELVGYCLEHGQHLLVYEFHKNGSLYDLLHLSDEYNKPLIWNSRIKIALGTARALEYLHEVCSPSIVHRNVKSANILLDAELSPHLSDSGLESFVPNADQVNLELNKSYFFRVVYFNIQIHINVMFTLFLKSSKRKICIKKISEGALDGSASSGYAAPEVTMSGQYTLQSDVYSFGVVMLELLTGRKPFDSSRARMEQSLVRWATPQLHDIDALTKMVDPELKGLYPVKSLSRFADVIALCVQTEPEFRPPMSEVVEALVRLVQRANMSKRTYGNDNATSPRGEMGGEDTP 905
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1379013 1386251 - ClCG09G001440.2 Cla09g00135 279555

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00135 905 SUPERFAMILY L domain-like 77 283 - -
Cla09g00135 905 SUPERFAMILY Protein kinase-like (PK-like) 539 873 IPR011009 -
Cla09g00135 905 Gene3D Transferase(Phosphotransferase) domain 1 635 895 - -
Cla09g00135 905 MobiDBLite consensus disorder prediction 309 332 - -
Cla09g00135 905 Pfam Protein kinase domain 557 871 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g00135 905 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 6 758 898 - -
Cla09g00135 905 MobiDBLite consensus disorder prediction 287 332 - -
Cla09g00135 905 Pfam Leucine rich repeat N-terminal domain 79 119 IPR013210 -
Cla09g00135 905 ProSiteProfiles Protein kinase domain profile. 556 876 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g00135 905 PANTHER OS01G0253100 PROTEIN 68 718 IPR045271 GO:0004714|GO:0006468
Cla09g00135 905 MobiDBLite consensus disorder prediction 885 905 - -
Cla09g00135 905 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 6 68 718 - -
Cla09g00135 905 Gene3D Ribonuclease Inhibitor 78 305 IPR032675 -
Cla09g00135 905 Pfam Leucine Rich repeat 191 205 IPR001611 GO:0005515
Cla09g00135 905 Pfam Leucine Rich repeat 145 163 IPR001611 GO:0005515
Cla09g00135 905 PANTHER OS01G0253100 PROTEIN 758 898 IPR045271 GO:0004714|GO:0006468
Cla09g00135 905 Gene3D Phosphorylase Kinase; domain 1 519 633 - -
Cla09g00135 905 ProSitePatterns Protein kinases ATP-binding region signature. 562 585 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00135 - - - qsu:112033551 582.793
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00126 Cla-Chr2:1403708 Cla09g00135 Cla-Chr9:1379013 1.13E-38 dispersed
Cla09g00135 Cla-Chr9:1379013 Cla10g01655 Cla-Chr10:32235033 3.35E-41 dispersed
Cla07g01353 Cla-Chr7:30688980 Cla09g00135 Cla-Chr9:1379013 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g7 Blo05g00016 . . . . . . Bma13g01189 Cmo08g00808 Cmo17g00626 Cma01g00022 . Car01g00018 Car14g01082 . Cpe12g00545 Cpe17g00420 Bhi01g02818 . . . . . . . . . . . . . . Cone17ag0031 . . Lsi02g02850 Csa07g02300 . Cme01g02755 . Blo10g00947 . . . Bpe09g00053 Bma09g01001 . . Cmo01g00024 . Cma08g00837 Cma17g00644 Car08g00721 Car17g00608 Cpe02g01752 . Bhi09g00253 . . . . . . Cla09g00135 . . . . . . . Csa03g02807 Chy01g02121 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla02g00126 . 34 718 Strubbelig Receptor Gene Family AT4G03390 60.0 7.6e-196 681.0
Cla01g02225 . 59 605 Strubbelig Receptor Gene Family AT4G03390 50.3 3.3e-130 463.0
Cla09g00135 . 540 879 Strubbelig Receptor Gene Family AT4G03390 51.2 2.6e-87 320.5
Cla10g01655 . 1 712 Strubbelig Receptor Gene Family AT5G06820 51.1 8.0e-171 597.8
Cla08g00508 . 22 707 Strubbelig Receptor Gene Family AT1G78980 60.4 1.9e-193 672.9
Cla01g02225 . 307 605 Strubbelig Receptor Gene Family AT1G78980 52.7 4.2e-84 309.7
Cla08g00508 . 20 685 Strubbelig Receptor Gene Family AT3G13065 54.4 6.8e-148 521.5
Cla09g00135 . 541 877 Strubbelig Receptor Gene Family AT3G13065 51.3 1.6e-91 334.3
Cla02g00126 . 430 708 Strubbelig Receptor Gene Family AT3G13065 50.4 5.9e-75 279.3
Cla01g00957 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.2 1.4e-84 311.2
Cla10g01655 . 1 712 Strubbelig Receptor Gene Family AT5G06820 51.1 8.0e-171 597.8
Cla02g00126 . 34 718 Strubbelig Receptor Gene Family AT4G03390 60.0 7.6e-196 681.0
Cla01g02225 . 59 605 Strubbelig Receptor Gene Family AT4G03390 50.3 3.3e-130 463.0
Cla09g00135 . 540 879 Strubbelig Receptor Gene Family AT4G03390 51.2 2.6e-87 320.5
Cla08g00508 . 20 685 Strubbelig Receptor Gene Family AT3G13065 54.4 6.8e-148 521.5
Cla09g00135 . 541 877 Strubbelig Receptor Gene Family AT3G13065 51.3 1.6e-91 334.3
Cla02g00126 . 430 708 Strubbelig Receptor Gene Family AT3G13065 50.4 5.9e-75 279.3
Cla08g00508 . 22 707 Strubbelig Receptor Gene Family AT1G78980 60.4 1.9e-193 672.9
Cla01g02225 . 307 605 Strubbelig Receptor Gene Family AT1G78980 52.7 4.2e-84 309.7
Cla07g01353 . 77 817 Strubbelig Receptor Gene Family AT1G53730 50.4 2.3e-178 622.9
Cla09g00135 . 49 904 Strubbelig Receptor Gene Family AT1G53730 50.5 2.1e-171 599.7
Cla08g00508 . 20 693 Strubbelig Receptor Gene Family AT1G53730 50.4 1.3e-154 543.9
Cla01g00957 . 7 689 Strubbelig Receptor Gene Family AT1G53730 50.9 4.7e-147 518.8
Cla01g02225 . 312 605 Strubbelig Receptor Gene Family AT3G14350 51.2 2.4e-76 283.9
Cla01g00957 . 201 711 Strubbelig Receptor Gene Family AT4G22130 68.2 4.4e-177 618.2
Cla09g00135 . 538 896 Strubbelig Receptor Gene Family AT4G22130 57.4 2.2e-112 403.3
Cla07g01353 . 509 824 Strubbelig Receptor Gene Family AT4G22130 60.1 1.8e-109 393.7
Cla02g00126 . 427 720 Strubbelig Receptor Gene Family AT4G22130 60.7 1.7e-104 377.1
Cla08g00508 . 360 707 Strubbelig Receptor Gene Family AT4G22130 52.4 1.3e-99 360.9
Cla01g02225 . 317 605 Strubbelig Receptor Gene Family AT4G22130 59.8 4.8e-99 359.0
Cla10g01655 . 374 696 Strubbelig Receptor Gene Family AT4G22130 51.7 9.7e-92 334.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001486 0 7 2 3 1 2 4 1 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 1 1 2 2 1 1 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80781 PF00069 Pkinase 6.90E-35 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla09g00135 Cla_Chr09 FPKM 0.573059 0.513944 2.056007 1.852824 0.0 0.641196 0.91965 6.827458 5.371584 6.239552