Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00143 ATGACGTCTCGCGGTTCCTCCGCTTCTGCCAATGGCCTATTACCGCTTACCGTTTCCACGTCCGGCCGGCATCACGATGTTGAGCCTGGGCTCTCCTCCAGCAAAAGCATTGACGAGGAGGAAGAAGAGGCTGTATCGGATCCCTTCGACATCGACAATACCAAAAATGTTCCTCTCGAGATACTCAAGCGATGGAGGCAAGCTGCATTGGTGCTTAATGCATCTCGGAGATTTAGATATACTTTGGACTTAAAAAAGGAGGAAGAGAAAGAACAAAGAAGACGGATGATTAGAGCCCATGCACAAGTCATAAGGGCAGCACTGCTTTTCAAATTGGCAGGGGAACAACAAATTGGTTCATCAGTATCACCTCCAATGTCAAGTGGTGACTATTCCATTAGTTTAGAACAGCTTGCTTCATTGACTCGTGATCAAAACTTGTCTTCTCTACAACAGTATGGAGGAGTTAAAGGCTTATCAAATTTATTGAAAACAAGTACCGAGAAAGGAATATTGGGAGATGAAACTGATCTACTCAAAAGAAGAAATGCATTTGGATCAAATACATATCCACGTAAAAAAGGACGGAGCTTCTTGAGATTTCTTTGGGAAGCTTGGCAAGATTTAACCCTAATCATCTTGATTATAGCTGCAGTGGCATCATTGGCTCTGGGGATTAAAACAGAGGGTGTAGAGGAAGGATGGTATGATGGAGGAAGTATTGCCTTTGCTGTATTTCTTGTCATAATAGTCACAGCGGTTAGTGATTATCGACAGTCTCTTCAGTTTCAGAACTTAAATGAGGAAAAACAGAACATACAAGTAGAGATCTTGAGGGATGGTAGAACTTTAAAGGTCTCAATATTTGACCTTGTTGTTGGGGATGTTGTACCTCTTAAAATTGGAGATCAGATCCCTGCTGATGGAATATTGATCACTGGTCATTCACTTGCCATAGATGAATCTAGCATGACAGGCGAAAGCAAGATTGTTCGCAAGGATCAGAAGACACCCTTTTTGATGTCTGGTTGTAAGGTTGCAGATGGAGTTGGTACCATGATGGTAACTGCTGTTGGAATCAATACTGAATGGGGATTGTTGATGGCAAGTATCTCAGAGGATACTGGGGAAGAAACTCCCTTGCAGGTCCGTTTGAATGGAGTTGCAACTTTCATAGGCATAGTTGGGCTTGTGGTTGCAGTTTCTGTGCTAGCCGTTCTTTTGGGCAGATACTTCACGGGAAATACACATGATGCAAATGGGAACGTTGAATTTCAGCGTGGGCAAACGAGTCTAGGTGATGCTGTAGATGGAGTTATTAAAATCGTTACTGTTGCTGTTACTATTGTGGTTGTTGCAGTGCCGGAAGGACTTCCTTTGGCTGTCACCCTAACATTAGCATACTCCATGAGGAAAATGATGGCTGATAAAGCATTGGTTCGTAGGCTGTCTGCTTGCGAAACTATGGGCTCTGCAACAACAATATGTAGTGATAAGACTGGAACGTTGACTTTAAATCAGATGACTGTGGTCAAGGCATGTGTTGGAAAGAAAATGATTAATCCCCCAGATGATCCACTGCAGTTGCATTCATTGGTACTCACTCTGCTACATGAGGGCATTGCTCAGAACAGCACGGGCAATGTTTTTGTGGCTAAGGATGGTGGAGGTATAGAGGTCTCTGGATCTCCTACAGAAAAGGCTATTTTATCTTGGGCTGTAAAGCTGGGAATGAAGTTTGATGTTGCCAAATCAGAGTCCAAAATTCTCCATGTTGTCCCTTTCAATTCAGAAAAGAAGCGAGGTGGTGTTGCAATACAGCGGGCCAACTCAGAAGTTTGCATACACTGGAAAGGAGCGGCAGAGATGGTGTTATCTTCATGTACAAAGTATGTGGACTTGAATGGTGAAGTGCACTCAATAGAGGACAATGAGGTCAGTGGTAGCAATTTATTACTTAGAGAACAATGTAGTGTTGCCATCTTCCTCCCGGTTAACAGTACGAAACTGAGTAGATTGAGAAACAATTTGAAGACTTTAAATCATGGTACCCAGGATTGTAGGATGCAATTGAACTATTTATTATGGAAATTAATTTTTGGTTCATCTGGCTTTATAGTTAACAATATGAAACTGAGTAGATTGAGAAACCACGTAATGACTTTAAATCATGGATGGTCTCATCCGTCATATTTATTTGGTGGACCAAAATACAGTTTGGATTATTTTAAGGCAGCTATTAGTGACATGGCTGCAAGTAGTTTGCGTTGTGTTGCCATTGCATATAGATCATATGAATTGGAGAAGATTCCAATAGATGAACAACGTTTGGATCAATGGGATTTGCCTGCTGATGATCTTGTTTTGCTTGCAATTGTTGGTATAAAGATTATTATCTTTTTAAATGATCCTTGTCGCAATGGTGTTAAAGAGGCTGTTAAAGTGTGCACAGATGCAGGTGTCAAGGTACTTTATTATGAGTTTAGGTTTATGTTTACCTTGAGCTGTTTTTTTGACGCTGAAGTGCGCATGGTCACTGGAGACAATATACAAACTGCAAAAGCTATAGCAGTAGAGTGTGGAATACTAAACGCAACTGAAGATGCTTCCGAGCCTACAGTAATTGAAGGGAAAACATTCCGTGTATTGTCTGAGAAGGAAAGAGAACAAGTTGCCCCAAAAATAACGGCTGTTTTGTTTCCGTTGATGGAACTTTTGATTATTATAAAAATTGATTATAAAAAGGGGTCAACTCCATGCAATGATATACAGGTGATGGGGAGGTCTTCACCTAATGACAAGCTCTTGCTTGTTCAAGCATTAAGAAAGGGAGGGGAAGTTGTTGCTGTAACTGGAGATGGGACTAATGATGCCCCTGCACTCCATGAGGCAGATATCGGTCTTTCTATGGGCATTCAAGGTACTGAAGTTGCTAAAGAGAGTTCTGATATTGTTATCTTGGACGATAACTTTGCTTCAGTTGTAAAGGTTGTCAGGTGGGGGCGTTCTGTGTATGCAAACATTCAAAAGTTCATCCAGTTTCAGCTCACTGTAAATGTTGCCGCTCTTGTGATCAATGTTGTTGCAGCTGTGTCTTCCGGTGATGTTCCTTTAAATACCGTTCAGCTTCTTTGGGTTAACCTGATCATGGACACACTTGGTGCTCTAGCATTAGCCACTGAACCACCAACAGACCACCTGATGCATCGGTCACCTGTTGGGCGAAGGGAACCCCTTATAACGAATATTATGTGGAGGAATTTGATTGTACAGGCTTTGTATCAAGTCGCTGTACTTCTTGTCCTCAACTTCTATGCCATTGATATTCTTCAATTGAACAATGATAGCAAGGAGCATGCCTTTAATGTGAAGAATACAGTGGTTTTCAATGCATTTGTCCTCTGCCAAATATTCAATGAATTTAATGCTCGAAAACCAGATGAAATGAACGTGTTCAGTGGAGTGACGAAAAATTACCTCTTTATGGGAATAGTTGGAACAACGTTCGTGCTTCAGATTCTCATCGTCGAATTTGCTGGAAAATTTACTTCAACAGTAAAACTTGATGGGAAACAATGGGTTATATGCTTCGCTGTTGCCCTTGTGAGTTGGCCGCTGGCGGTTGTTGGCAAACTGATTCCAGTTCCGGAGACCCCATTGGCTAAATACTTCACAAAGCAAGTTCAACGGTGCAGAAGGTCACGTGGTGCTTAA 3714 41.73 MTSRGSSASANGLLPLTVSTSGRHHDVEPGLSSSKSIDEEEEEAVSDPFDIDNTKNVPLEILKRWRQAALVLNASRRFRYTLDLKKEEEKEQRRRMIRAHAQVIRAALLFKLAGEQQIGSSVSPPMSSGDYSISLEQLASLTRDQNLSSLQQYGGVKGLSNLLKTSTEKGILGDETDLLKRRNAFGSNTYPRKKGRSFLRFLWEAWQDLTLIILIIAAVASLALGIKTEGVEEGWYDGGSIAFAVFLVIIVTAVSDYRQSLQFQNLNEEKQNIQVEILRDGRTLKVSIFDLVVGDVVPLKIGDQIPADGILITGHSLAIDESSMTGESKIVRKDQKTPFLMSGCKVADGVGTMMVTAVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLVVAVSVLAVLLGRYFTGNTHDANGNVEFQRGQTSLGDAVDGVIKIVTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVKACVGKKMINPPDDPLQLHSLVLTLLHEGIAQNSTGNVFVAKDGGGIEVSGSPTEKAILSWAVKLGMKFDVAKSESKILHVVPFNSEKKRGGVAIQRANSEVCIHWKGAAEMVLSSCTKYVDLNGEVHSIEDNEVSGSNLLLREQCSVAIFLPVNSTKLSRLRNNLKTLNHGTQDCRMQLNYLLWKLIFGSSGFIVNNMKLSRLRNHVMTLNHGWSHPSYLFGGPKYSLDYFKAAISDMAASSLRCVAIAYRSYELEKIPIDEQRLDQWDLPADDLVLLAIVGIKIIIFLNDPCRNGVKEAVKVCTDAGVKVLYYEFRFMFTLSCFFDAEVRMVTGDNIQTAKAIAVECGILNATEDASEPTVIEGKTFRVLSEKEREQVAPKITAVLFPLMELLIIIKIDYKKGSTPCNDIQVMGRSSPNDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIVILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSSGDVPLNTVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRREPLITNIMWRNLIVQALYQVAVLLVLNFYAIDILQLNNDSKEHAFNVKNTVVFNAFVLCQIFNEFNARKPDEMNVFSGVTKNYLFMGIVGTTFVLQILIVEFAGKFTSTVKLDGKQWVICFAVALVSWPLAVVGKLIPVPETPLAKYFTKQVQRCRRSRGA 1237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1449087 1467463 - ClCG09G001550.2 Cla09g00143 279563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00143 1237 PRINTS P-type cation-transporting ATPase superfamily signature 951 970 - -
Cla09g00143 1237 PRINTS P-type cation-transporting ATPase superfamily signature 975 987 - -
Cla09g00143 1237 PRINTS P-type cation-transporting ATPase superfamily signature 496 510 - -
Cla09g00143 1237 PRINTS P-type cation-transporting ATPase superfamily signature 838 848 - -
Cla09g00143 1237 PRINTS P-type cation-transporting ATPase superfamily signature 320 334 - -
Cla09g00143 1237 Gene3D - 159 347 - -
Cla09g00143 1237 SUPERFAMILY Calcium ATPase, transduction domain A 273 369 IPR008250 -
Cla09g00143 1237 MobiDBLite consensus disorder prediction 1 18 - -
Cla09g00143 1237 ProSitePatterns E1-E2 ATPases phosphorylation site. 498 504 IPR018303 -
Cla09g00143 1237 SMART Cation_ATPase_N_a_2 152 226 IPR004014 -
Cla09g00143 1237 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 436 519 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla09g00143 1237 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 920 1031 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla09g00143 1237 Gene3D - 512 797 IPR023299 GO:0000166
Cla09g00143 1237 PANTHER CATION TRANSPORTING ATPASE 36 645 - -
Cla09g00143 1237 SUPERFAMILY HAD-like 494 1056 IPR036412 -
Cla09g00143 1237 PANTHER CALCIUM-TRANSPORTING ATPASE 921 1229 - -
Cla09g00143 1237 PANTHER CALCIUM-TRANSPORTING ATPASE 739 897 - -
Cla09g00143 1237 Pfam E1-E2 ATPase 272 474 - -
Cla09g00143 1237 Gene3D - 963 1217 - -
Cla09g00143 1237 PANTHER CALCIUM-TRANSPORTING ATPASE 36 645 - -
Cla09g00143 1237 Pfam Cation transporting ATPase, C-terminus 1036 1213 IPR006068 -
Cla09g00143 1237 Pfam Cation transport ATPase (P-type) 553 630 - -
Cla09g00143 1237 PANTHER CATION TRANSPORTING ATPASE 921 1229 - -
Cla09g00143 1237 PANTHER CATION TRANSPORTING ATPASE 739 897 - -
Cla09g00143 1237 SUPERFAMILY Calcium ATPase, transmembrane domain M 153 1215 IPR023298 -
Cla09g00143 1237 PRINTS Sodium/potassium-transporting ATPase signature 489 510 - -
Cla09g00143 1237 PRINTS Sodium/potassium-transporting ATPase signature 239 259 - -
Cla09g00143 1237 PRINTS Sodium/potassium-transporting ATPase signature 615 633 - -
Cla09g00143 1237 Gene3D - 348 511 - -
Cla09g00143 1237 MobiDBLite consensus disorder prediction 1 50 - -
Cla09g00143 1237 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 502 644 IPR023299 GO:0000166
Cla09g00143 1237 Pfam Cation transporter/ATPase, N-terminus 154 221 IPR004014 -
Cla09g00143 1237 Pfam Ca2+-ATPase N terminal autoinhibitory domain 47 89 IPR024750 GO:0005516
Cla09g00143 1237 Gene3D - 59 112 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g00143 Cla-Chr9:1449087 Cla11g01128 Cla-Chr11:22983121 0 dispersed
Cla09g00143 Cla-Chr9:1449087 Cla09g00688 Cla-Chr9:6679601 6.55E-151 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00143 K01537 - csv:101214801 1118.99