Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00147 ATGGACAGTATTCATGCGAGCGATGGACGGATGCATATTAGCCATGCACAGCATTCGATGCACACGCAATCGGTGCAAGACCAGGAACATCATGACTTGCATTACATGAGTAATGGGAATGGACTGGCTGATGAACATGAAAATGAAGGTCATGGTATTATGGTTGTGGAAAGGGAAGTTCAATCGGACCATGGCGATCTTGCAGAGAATCGTGGTGTAATGGTGGATCGAGGAGGAGATAACTGCGACCAGCTCACCCTGTCTTATCAGGGTCAAGTTTATGTTTTCGATTCTGTCTCGCCCGAAAAGGTTCAAGCCGTATTATTGTTATTGGGAGGTCGTGAAGTACCTTTGCGTGTTCCATCAATCCCAATAACTAATCAACAGAATGATAGGCATCTCACTGATGAAGCGTTTAACCAGGCACTTGCCAATATCCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAGCGTAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAGCGTAATAAAGGCCAGTTCACATCTTCTAAACCCATCCATGAAGATTCATCATTGGCCATAGCGAGTTGGGAACCAAATGAGAGTTGGAGTAGTGATGGAAATGGATCCCAACAACAAGAAATTCTCTGCCGACATTGTGGTATTAGTGAGAAATCAACACCAATGATGCGACGTGGACCTGATGGGCCAAGAACCCTTTGCAATGCTTGCGGACTCATGTGGGCAAACAAGGTATCAAACATAACTTCATTTCTCATCCCCCTCCAGAAAAACAAGGTCCTTGATGGAGCGTCTTCGAAGTCCTTGCAGCATAAATTCTTCAAGAAATGGATTCCAATCAGTATGGATGACGTGCAGAGGTTATTCCATTCTATGTTGGGATTAAGAGGCAGCATAGCGACTCTTATGGAGGGGTTAGAATTAGACGGCATGGATGTGAATATTTTGAGGATGATTCAAGGGGTTAAGGGGTCTTTTTCTTCTAAGCAAGCACATGACTCAGAAAATGATATGCTGCATTTAGCTGCTCTGCTTTTCGCCTTAGCAATTCTTTTCTTGAAGGCTTCGTTAAAATTTCGTGTTCTCACTGCCCGTTACGTCAATAATTCAAAACTTGTTTTTAGAATGCTGTGCAGAATGGAGATTCTGAGTCGAACCCAAAAGGTGTTTAGAATTGTGACAGATGTTTATGATTGCTGTTCCGGAATTTAG 1275 43.14 MDSIHASDGRMHISHAQHSMHTQSVQDQEHHDLHYMSNGNGLADEHENEGHGIMVVEREVQSDHGDLAENRGVMVDRGGDNCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVPSIPITNQQNDRHLTDEAFNQALANIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSSDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKVSNITSFLIPLQKNKVLDGASSKSLQHKFFKKWIPISMDDVQRLFHSMLGLRGSIATLMEGLELDGMDVNILRMIQGVKGSFSSKQAHDSENDMLHLAALLFALAILFLKASLKFRVLTARYVNNSKLVFRMLCRMEILSRTQKVFRIVTDVYDCCSGI 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1505242 1510372 + ClCG09G001590.2 Cla09g00147 279567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00147 424 SMART GATA_3 225 283 IPR000679 GO:0006355|GO:0043565
Cla09g00147 424 ProSiteProfiles Tify domain profile. 78 113 IPR010399 -
Cla09g00147 424 ProSiteProfiles CCT domain profile. 155 197 IPR010402 GO:0005515
Cla09g00147 424 Pfam CCT motif 155 197 IPR010402 GO:0005515
Cla09g00147 424 ProSitePatterns GATA-type zinc finger domain. 231 258 IPR000679 GO:0006355|GO:0043565
Cla09g00147 424 CDD ZnF_GATA 231 290 IPR000679 GO:0006355|GO:0043565
Cla09g00147 424 Gene3D - 221 292 IPR013088 GO:0006355|GO:0008270
Cla09g00147 424 Pfam GATA zinc finger 231 265 IPR000679 GO:0006355|GO:0043565
Cla09g00147 424 PANTHER GATA TRANSCRIPTION FACTOR 28 4 265 IPR045280 GO:0006355
Cla09g00147 424 PANTHER GATA TRANSCRIPTION FACTOR 28 4 265 - -
Cla09g00147 424 SMART tify_2 78 113 IPR010399 -
Cla09g00147 424 Pfam tify domain 84 112 IPR010399 -
Cla09g00147 424 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 226 267 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g00147 Cla-Chr9:1505242 Cla09g01585 Cla-Chr9:31623402 2.40E-65 dispersed
Cla09g00147 Cla-Chr9:1505242 Cla09g00496 Cla-Chr9:4701138 2.72E-06 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61654 PF06203 CCT 1.40E-14 CL0281 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00147 - - csv:101215755 533.487