Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00150 ATGCCGTCCGTCTATGGAGCTCGTGTGACCACTTTTGAAGACTCTGAGAAGGAAAGCGAGTATGGATATGTCCGGAAGGTATCTGGACCAGTCGTCGTGGCAGATGGCATGGGAGGTGCAGCCATGTATGAATTGGTTCGTGTTGGTCATGATAATCTGATTGGTGAAATCATTAGGTTAGAAGGAGATTCTGCCACTATTCAGGTTTATGAGGAAACTGCTGGTTTGATGGTGAATGACCCTGTCTTACGTACTCATAAACCTTTGTCAGTGGAGTTGGGACCTGGAATACTGGGAAATATATTTGATGGCATTCAGAGGCCATTGAAAACAATTGCAAAGAGATCAGGGGATGTCTACATTCCTCGTGGTGTCGCTGTCCCGGCACTGGACAAAGACATACTTTGGGATTTTCAACCCAAAAAACTAGGTGAGGGCGACTTATTGACAGGTGGAGACTTATATGCAACTGTCTTCGAGAATAGTCTAATGGAGCACCACATTGCACTTCCTCCTGATGCTATGGGGAAAATTACCTATATTGCAGCGCCTGGCCAATATTCATTGAAGGATACTGTTTTAGAGCTCGAGTTTCAAGGAGTTAAAAAGCAATTTACCATGCTTCAGACTTGGCCTGTGCGTACTCCTAGACCAGTTGCATCGAAGCTTGCAGCTGATACCCCTCTTTTGACCGGGCAGCGTGTTCTTGATGCACTCTTCCCGTCCGTTCTTGGTGGGACATGTGCCATTCCTGGAGCATTTGGTTGTGGAAAAACAGTCATTAGTCAAGCTCTCTCTAAATATTCAAATTCTGATACTGTGGTGTATGTTGGTTGTGGAGAGAGAGGAAATGAAATGGCTGAAGTTCTTATGGATTTTCCTCAATTGACAATGACATTGCCTGACGGGCGTGAAGAATCTGTCATGAAGCGTACCACTCTTGTGGCTAACACTTCTAATATGCCTGTGGCTGCTCGTGAAGCTTCAATTTATACTGGAATTACTTTGGCCGAATACTTCAGAGATATGGGATACAATGTAAGCATGATGGCAGATTCAACATCTCGATGGGCAGAAGCACTTCGTGAAATATCTGGACGACTGGCAGAAATGCCAGCAGATAGTGGATATCCTGCCTACCTAGCGGCACGTTTAGCCTCTTTCTATGAGCGTGCTGGTAAAGTGAAGTGTCTTGGTGGGCCAGAACGAACTGGCAGTGTTACCATTGTCGGTGCAGTTTCTCCCCCTGGAGGAGATTTCTCTGATCCAGTGACGTCTGCCACCCTCAGTATTGTCCAGGTTTTCTGGGGTCTAGATAAGAAGCTTGCCCAGAGGAAGCACTTCCCTTCCGTGAATTGGCTAATTTCATACTCAAAATACTCTTCTGCGTTGGAATCTTTCTATGAGAAGTTTGATCCAGATTTTATTAACATCAGAACGAAGGCTCGTGAAGTCCTTCAGAGGGAAGATGACCTCAATGAAATTGTCCAACTTGTAGGAAAGGATGCCTTGGCTGAAGGAGATAAGATTACCTTAGAGACTGCAAAGCTTTTGAGGGAGGACTATCTTGCTCAGAATGCATTTACTCCGTATGATAAATTCTGCCCCTTCTACAAGTCGGTCTGGATGATGCGTAATATCATTCATTTCTACAATTTGGCTAATCAGGCAGTAGAGAGGGGAGCGGGTATGGATGGCCAAAAGATAACATACAGTTTGATTAAGCATCGGTTGGGAGATCTGTTCTATCGCCTGGTGTCTCAGAAGTTCGAGGATCCAGCTGAAGGAGAAGCAGCTCTCACTGAAAAATTTAAGAAGCTACATGAAGATCTGACAAATGGTTTCCGTGCTCTCGAGGACGAAACCCGGTAG 1872 45.25 MPSVYGARVTTFEDSEKESEYGYVRKVSGPVVVADGMGGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAKRSGDVYIPRGVAVPALDKDILWDFQPKKLGEGDLLTGGDLYATVFENSLMEHHIALPPDAMGKITYIAAPGQYSLKDTVLELEFQGVKKQFTMLQTWPVRTPRPVASKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSSALESFYEKFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVERGAGMDGQKITYSLIKHRLGDLFYRLVSQKFEDPAEGEAALTEKFKKLHEDLTNGFRALEDETR 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1529071 1534846 - ClCG09G001630.2 Cla09g00150 279570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00150 623 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 463 IPR027417 -
Cla09g00150 623 Pfam ATP synthase alpha/beta family, beta-barrel domain 25 85 IPR004100 GO:0046034|GO:1902600
Cla09g00150 623 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 232 458 IPR000194 GO:0005524
Cla09g00150 623 ProSitePatterns ATP synthase alpha and beta subunits signature. 449 458 IPR020003 GO:0005524
Cla09g00150 623 Gene3D - 20 89 IPR023366 -
Cla09g00150 623 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 3 622 - -
Cla09g00150 623 TIGRFAM V-ATPase_V1_A: V-type ATPase, A subunit 20 611 IPR005725 GO:0033180|GO:0046961|GO:1902600
Cla09g00150 623 CDD ATP-synt_V_A-type_alpha_C 475 581 - -
Cla09g00150 623 Hamap V-type ATP synthase alpha chain [atpA]. 19 622 IPR022878 GO:0046034|GO:0046961
Cla09g00150 623 Pfam ATPsynthase alpha/beta subunit N-term extension 102 223 IPR031686 -
Cla09g00150 623 Gene3D - 91 457 IPR027417 -
Cla09g00150 623 Gene3D - 459 615 IPR024034 -
Cla09g00150 623 Gene3D - 134 205 - -
Cla09g00150 623 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 471 553 - -
Cla09g00150 623 CDD ATP-synt_V_A-type_alpha_N 21 87 - -
Cla09g00150 623 CDD V_A-ATPase_A 88 460 - -
Cla09g00150 623 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 17 89 IPR036121 GO:0046034|GO:1902600
Cla09g00150 623 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 3 622 IPR022878 GO:0046034|GO:0046961
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g00150 Cla-Chr9:1529071 Cla01g00589 Cla-Chr1:6680453 8.47E-27 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00150 K02145 - csv:101216234 1211.44