Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00159 ATGTGGAGGCTTAAGGTAGCAGATGGCGGGAATGATCCTTACATCTATTCTATGAACAACTTTGTAGGAAGGCAAATATGGGAATTCGACCCCAACGCAGGGACCCCTGAAGAGCTGGCCGAAGTCGAACGCGTTCGCGATGAGTTCACCAAAAATCGTCTCAAAGGTTTTCCAAGTGCTGACTTGCTTTGGCGCCTCCAGCTTCTGAGAGAGAAGAATTTCAAACAAAGCATCCCACGGGTGAAGGTTGAAGAAGGAGAAGAAATGAGTTACGAAATGGCATGGGATGCAATGAGAAGAGGGGCGCATTTCTTAGCGGCCATACAAGCAAGCGATGGGCATTGGCCCAGCGAAACATCGGGCCCACTATTTTACTTGTGTCCCCTCCTTATTTGCATGTACATAATGGGCTTTATGGATACCGCATTCACTCCCGAGCACAAGAAAGAAATGATGCGTTACGTTTACAACCATCAGAATGAAGATGGTGGATGGGGGTTACACGTTGGTGGTCACAGTAATATGTTCTGCACTACCTTCAATTATATCTCTTTACGTTTACTTGGTGAAGGACCTGATGTTGAGCTAGTTTCCAGAGCCAGAGAATGGATTCGTGATCACGGCGGTGTCACATCCATACTTTCTTGGGGAAAGACGTGGCTCTCAATATTAAACGTGTTCGACTGGTCTGCAAGCAACCCCATGCCTCCTGAATATTGGATGTTTCCCACTTGGGTTCCCATTCATCCATCAAACATGATGTGCTACACTCGGATCACCTACATGCCCATGTCTTACCTATATGGAAAAAGGTTCCAAGCACCTCTAACGCCTCTTGTTTTACAATTAAGAGATGAACTTCACACTCAACCCTACGACCAAATTAATTGGAGAAAAGTTCGTCACATGTGTGCTACGGAAGACCTCTACTTTCCACATCCCATTGTCCAAGACTTGCTTTGGGACACTCTTTACTTGCTAAGTGAACCACTCATGACCCGGTGGCCTTTTAACAAATTGATTCGCCAAAAAGCCCTCAATGAGACTATGAGGCATATTCATTATGAGGATGAAAATAGTCGCTACATCACTATTGGTTGCGTCGAAAAGCCATTATGCATGCTAGCTTGTTGGGTTGAAGATCCTAATAGTGAGTACGTGAAGAAGCATTTTGCGAGAATTCCTGATTATTTATGGATGGCGGAAGATGGCATGAAAATGCAAAGTTTTGGTAGCCAATCGTGGGATGCCGCTTTGGCAATGCAAGCGCTGCTTTCTTGTAATATCCCACATGAAATTGGGCCTGCTCTCAACACTGGCCATCAATTCATCAAGAACTCCCAGGTTAGAAACAATCCTCCTGGTGACTACAAAAGTATGTTCCGCTACATGTCTAAAGGATCTTGGACCTTCTCAGACTGTGATCATGGATGGCAAGTTTCTGATTGCACTGCCGAGAATTTGAAGTGTTGTCTACTGCTGTCGTTGCTACCACCTGAAATGGTTGGTGAGAAGATGGAACCTGAACGTTTTTACGATGCTGTTAATGTCATTCTGAACATGCAAAGCAAAAATGGGGGTTTACCAGCCTGGGAGCCAGCGTCAAGTTACTACTGGATGGAGTGGCTGAATCCAGTGGAATTTCTCGAAGATCTAATCATCGAGCACCAGCATGTGGAGTGCACCTCATCTGCGTTGCAAGCAATACTCTTATTTAGGAAACAATACCCAGGACATAGAAGGAAAGAGATCAACAATTTTATCAACAAGGCCGTTCAATTTCTTCAAGATATACAATTGCCTGATGGATCTTGGTATGGGAACTGGGGAATTTGCTATACTTATGGAACGTGGTTCGCACTCAAGGCATTGTCAATGGCGGGGAAGACCTATGAAAATTGTGAGGCGCTTCGGAAAGGAGCTAATTTTCTAATCAAGATACAGAATCCAGAAGGAGGGTTTGGAGAGAGCTACTTGTCATGTCCTTACAAGGTCTCAAAACTACCTATGGGTAGTAACGGTTGGTCATGTTTAGTTCAAGGAAGATATATACCGCTGGATGGGAAAAGATCAAATTTGGTGCAAACGGCATGGGGTATGATGGGTTTGATAAGTGCTGGACAGGCAAATGTAGACCCCACTCCTATTCATCGTGCTGCCAAGTTGTTGATCAATTCTCAAACAGAAGATGGTGATTTTCCACAAGAGGAAATTACGGGAGAATTCTTCAAAAATTGTACTTTACATTTTGCAGCATTTAGAGAAGTATTTCCTGTGATGGCACTGGGAGAATATTCCCAAACGCTCTCTATACATTCCAATTACAGTAGTTTGTTCGAGTTTCACAAGGCCAATCACCCCTTGAAGAAAGCGCAACGAGTAGAAGAGGAAGAAGAAGGACGAAAACTAGAGCCCCAACCCTCTCTCTCAACTTCTCAGAGTTGCAGTAGTCCAAGGTGCATCATTAGTCCATCAGCATTTTTCCCAACTCCATGCTGGAGAACCTTAAATGCTGTTCAACTTAACCCGTCTCATCTCATTATGCACCGGCTTTTGTTTCGGGATTCAATTCTCGTCTCAAAGTTATCGGCTTTACGAGTCAGACCAGGCTTTAGAATTACGTGTTCTATAAACCGCTTTTCCATCATTTTCTGCCTTATTCCAGTTTCCGCGAACTCTGTTTTGTTTTTGGTTTTTTCTTCCTTTGCTTGGGAAATTTCTATTCGTCCATTCCATCCACTTGACCGCCCCCATATTTTCATATTTCGTTTTCATTTGTATCAGGTGGCTCGGTTGTCAGGAATTTCCAAAATTCAGCGACCAGGGTCGGGGGGCGATTTGCCCCAGGGTGGCGAGTACAACCCTTATCCTATTGCGCGGAGGGTAAATTCCTCCCATACCGTTCTCATGGATGATGACATTGAAAATGCTAGCTTGGGGGTGTACCAAGACAGGCAAAGGACTTTCCCCGATATGCGTAGTAAAGTCAACACCACATTGGTATACGTGATTATCTCTTATGTCTTATCTGACTTCTACTATGTGCTTCTAGTCTTCTGCTTTTCGATATATCTCACCAAATGGGTGCTCTCGAAAGATGAAGGGCCACGGGAGATGGCTCAGATTTCAGAGGCAATACGTGATGGGGCAGAAGGTTTCTTTAGGACTCAGTATAGTACCATCTCCAAAATGGCTATGTTACTTGCAGTAGTGATTCTTTGCATATACTTGTTTCGTAGTACTACTCCTCAACAAGAATCTTCCGGAATAGGGAGGTCAACAACTGCTTATATTACTGTTGCAGCATTTCTGTTAGGAGCCTTGTGTTCAGGTATTGCAGGGTATGTTGGAATGTGGGTTTCAGTTCGTGCAAATGTCAGGGTCTCTAGTGCTGCCAGACGGTCTGCAAGGGAGGCATTGCAGATTGCTGTCCGGGCTGGTGGTTTTTCTGCCATAGTTGTTGTTGGCATGGCTGTTATTGGTATAGCCATCCTGTATGCTGCATTTCATGTTTGGTTGGATGTGGGTTTGCCAGGTTCAACCAAGGTTACTGACTTGCCTCTTCTCCTTGTGGGTTATGGTTTTGGAGCTTCTTTTGTTGCCCTATTTGCTCAGTTGGGTGGTGGTATCTATACCAAAGCTGCTGATGTTGGGGCAGACCTTGTCGGAAAAGTTGAGCAGGGAATACCAGAAGATGACCCAAGAAATCCTGCTGTTATTGCAGATCTGGTTGGGGACAATGTGGGCGATTGTGCCGCTCGAGGTGCAGATCTCTTTGAAAGCATAGCTGCTGAAATTATTAGTGCCATGATACTTGGGGGGACAATGGCTGAACGTTGTAAAATTGAAGATCCATCTGGTTTCATTTTATTTCCGCTGGTAGTACACTCCTTTGATCTGGTGATTTCATCAATTGGCATTCTCTCTATCAGGAGAGGTAATCGTGAATCTGGTGTTAAGGGTCCCATAGAGGATCCAATGACTATTCTGCAGAGAGGATACTCTGTCACTATCGTTCTAGCTGTTCTAACATTTGGCGTGTCTACCCGGTGGTTGCTTCATACTGAACAAGCACCTTCTGCATGGTTCAACTTTGCCTTGTGTGGCTTGGTTGGTATTATAACGGCTTACATTTTTGTCTGGATCACAAAATACTACACTGACTACAAGCATGAGCCCGTGCGTTCATTAGCACTTTCTAGCTCCACAGGCCATGGGACAAACATAATTGCTGGAGTCAGTTTGGGCCTAGAATCAACAGCACTTCCTGTTCTTGTTATTAGTGTTTCTATTGTTTCAGCTTTCTGGTTGGGTCGCACATCAGGACTCGTGGACGAAGCGGGAAATCCAACAGGTGGACTATTTGGTACTGCTGTAGCAACAATGGGAATGCTCAGCACTGCTGCCTATGTTCTCACAATGGATATGTTTGGGCCAATAGCTGATAATGCTGGTGGAATTGTTGAGATGAGTCAGCAGCCAGAAAGCGTTCGGGAGATTACTGATCTTCTTGATGCAGTAGGTAACACAACTAAAGCGACCACAAAAGGTTTTGCCATTGGCTCTGCAGCACTGGCATCCTTCTTACTTTTCAGTGCGTATATGGATGAGGTATCTGCATTTGCTCATGAACCTTTTAAACAGGTAGATATTGCAATTCCAGAAGTTTTCGTTGGTGGTTTGTTGGGTTCCATGCTTATTTTTCTCTTTAGTGCTTGGGCCTGCTCTGCTGTTGGCCGAACAGCCCAAGAGGTTGTAAAGGAAGTAAGAAGACAGTTCATTGAGAGGCCTGGTATTATGGATTATACCGAGAAACCAGAATATGGACGTTGCGTTGCTATTGTAGCATCAGCATCTTTAAGGGAGATGATTAAACCTGGTGCTTTGGCTATCATTTCTCCTATGGCAGTTGAACTTTGTTTCCATATTTGCATTTTGAATGAAGATAACTTGGACATTCAAAGGGAAGTTGTTCTGGTATCAATTGCAGGCTTCCTGTTTAGAATATTGGGACACTACACTGGGCAGCCGCTTTTAGGGGCCAAGGTCGTTGCTGCGATGCTGATGTTTGCCACAGTCTCCGGTATTCTCATGGCACTTTTTCTGAACACAGCAGGGGGTGCCTGGGATAATGCCAAGAAGTATATAGAGACTGGGGTTCTTGGAGGTAAAGGTAGCGATTGTCATAAAGCTGCCGTAACTGGGGACACTGTAGGTGACCCATTCAAGGACACAGCAGGGCCTTCTCTTCACGTTCTCATTAAAATGCTCGCAACCATAACGCTGGTCATGGCTCCGATCTTTCTCTAA 5310 44.69 MWRLKVADGGNDPYIYSMNNFVGRQIWEFDPNAGTPEELAEVERVRDEFTKNRLKGFPSADLLWRLQLLREKNFKQSIPRVKVEEGEEMSYEMAWDAMRRGAHFLAAIQASDGHWPSETSGPLFYLCPLLICMYIMGFMDTAFTPEHKKEMMRYVYNHQNEDGGWGLHVGGHSNMFCTTFNYISLRLLGEGPDVELVSRAREWIRDHGGVTSILSWGKTWLSILNVFDWSASNPMPPEYWMFPTWVPIHPSNMMCYTRITYMPMSYLYGKRFQAPLTPLVLQLRDELHTQPYDQINWRKVRHMCATEDLYFPHPIVQDLLWDTLYLLSEPLMTRWPFNKLIRQKALNETMRHIHYEDENSRYITIGCVEKPLCMLACWVEDPNSEYVKKHFARIPDYLWMAEDGMKMQSFGSQSWDAALAMQALLSCNIPHEIGPALNTGHQFIKNSQVRNNPPGDYKSMFRYMSKGSWTFSDCDHGWQVSDCTAENLKCCLLLSLLPPEMVGEKMEPERFYDAVNVILNMQSKNGGLPAWEPASSYYWMEWLNPVEFLEDLIIEHQHVECTSSALQAILLFRKQYPGHRRKEINNFINKAVQFLQDIQLPDGSWYGNWGICYTYGTWFALKALSMAGKTYENCEALRKGANFLIKIQNPEGGFGESYLSCPYKVSKLPMGSNGWSCLVQGRYIPLDGKRSNLVQTAWGMMGLISAGQANVDPTPIHRAAKLLINSQTEDGDFPQEEITGEFFKNCTLHFAAFREVFPVMALGEYSQTLSIHSNYSSLFEFHKANHPLKKAQRVEEEEEGRKLEPQPSLSTSQSCSSPRCIISPSAFFPTPCWRTLNAVQLNPSHLIMHRLLFRDSILVSKLSALRVRPGFRITCSINRFSIIFCLIPVSANSVLFLVFSSFAWEISIRPFHPLDRPHIFIFRFHLYQVARLSGISKIQRPGSGGDLPQGGEYNPYPIARRVNSSHTVLMDDDIENASLGVYQDRQRTFPDMRSKVNTTLVYVIISYVLSDFYYVLLVFCFSIYLTKWVLSKDEGPREMAQISEAIRDGAEGFFRTQYSTISKMAMLLAVVILCIYLFRSTTPQQESSGIGRSTTAYITVAAFLLGALCSGIAGYVGMWVSVRANVRVSSAARRSAREALQIAVRAGGFSAIVVVGMAVIGIAILYAAFHVWLDVGLPGSTKVTDLPLLLVGYGFGASFVALFAQLGGGIYTKAADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAARGADLFESIAAEIISAMILGGTMAERCKIEDPSGFILFPLVVHSFDLVISSIGILSIRRGNRESGVKGPIEDPMTILQRGYSVTIVLAVLTFGVSTRWLLHTEQAPSAWFNFALCGLVGIITAYIFVWITKYYTDYKHEPVRSLALSSSTGHGTNIIAGVSLGLESTALPVLVISVSIVSAFWLGRTSGLVDEAGNPTGGLFGTAVATMGMLSTAAYVLTMDMFGPIADNAGGIVEMSQQPESVREITDLLDAVGNTTKATTKGFAIGSAALASFLLFSAYMDEVSAFAHEPFKQVDIAIPEVFVGGLLGSMLIFLFSAWACSAVGRTAQEVVKEVRRQFIERPGIMDYTEKPEYGRCVAIVASASLREMIKPGALAIISPMAVELCFHICILNEDNLDIQREVVLVSIAGFLFRILGHYTGQPLLGAKVVAAMLMFATVSGILMALFLNTAGGAWDNAKKYIETGVLGGKGSDCHKAAVTGDTVGDPFKDTAGPSLHVLIKMLATITLVMAPIFL 1769
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1640183 1661726 - ClCG09G001720.2 Cla09g00159 279579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00159 1769 SFLD Prenyltransferase Like 2 94 767 IPR018333 GO:0005811|GO:0016104|GO:0016866
Cla09g00159 1769 Gene3D - 486 737 - -
Cla09g00159 1769 PANTHER K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP 1662 1769 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Cla09g00159 1769 MobiDBLite consensus disorder prediction 790 817 - -
Cla09g00159 1769 TIGRFAM squalene_cyclas: squalene/oxidosqualene cyclases 97 767 IPR018333 GO:0005811|GO:0016104|GO:0016866
Cla09g00159 1769 Gene3D - 119 411 - -
Cla09g00159 1769 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 348 767 IPR008930 -
Cla09g00159 1769 Pfam Inorganic H+ pyrophosphatase 1017 1764 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Cla09g00159 1769 Pfam Squalene-hopene cyclase N-terminal domain 100 399 IPR032697 -
Cla09g00159 1769 CDD SQCY_1 98 765 IPR018333 GO:0005811|GO:0016104|GO:0016866
Cla09g00159 1769 Hamap Putative K(+)-stimulated pyrophosphate-energized sodium pump [hppA]. 1005 1769 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Cla09g00159 1769 PANTHER K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP 998 1654 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Cla09g00159 1769 Pfam Squalene-hopene cyclase C-terminal domain 414 766 IPR032696 -
Cla09g00159 1769 TIGRFAM V_PPase: V-type H(+)-translocating pyrophosphatase 1017 1768 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Cla09g00159 1769 PANTHER INORGANIC DIPHOSPHATASE-RELATED 998 1654 - -
Cla09g00159 1769 PANTHER INORGANIC DIPHOSPHATASE-RELATED 1662 1769 - -
Cla09g00159 1769 ProSitePatterns Terpene synthases signature. 602 616 IPR002365 GO:0016866
Cla09g00159 1769 MobiDBLite consensus disorder prediction 790 804 - -
Cla09g00159 1769 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 121 407 IPR008930 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01590 Cla-Chr2:30572533 Cla09g00159 Cla-Chr9:1640183 0 dispersed
Cla06g01171 Cla-Chr6:24855454 Cla09g00159 Cla-Chr9:1640183 8.13E-139 dispersed
Cla06g01794 Cla-Chr6:31353941 Cla09g00159 Cla-Chr9:1640183 0 dispersed
Cla09g00001 Cla-Chr9:54793 Cla09g00159 Cla-Chr9:1640183 0 dispersed
Cla09g00159 Cla-Chr9:1640183 Cla09g02150 Cla-Chr9:39129117 0 dispersed
Cla09g02151 Cla-Chr9:39136906 Cla09g00159 Cla-Chr9:1640183 8.77E-06 dispersed
Cla09g00159 Cla-Chr9:1640183 Cla09g00160 Cla-Chr9:1673419 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00159 K23025 K15820 csv:101216883 1493.79