Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00177 ATGGCCGTTGTCATGTCCGACGACCACCCCTCTCGCCGTCTTAAGATTCTTCCTTCTTCTCCGGCTCTCTCTCTCACTCTTGCTGGGGTTTTTGGGAATGCGGCGGCGATGGATGTGGAGTTCGACGCCCCGGCGAGGAGGGACGACAGCTACAGCGACAACTCTGAACCGGCGGGATCCAGGTCGGCGGAGGATTTGGGGGTCGACCCTGATGATGAAGATGAAGATAAATTACAGGGGAATACAAAGAAGAGGAAGAATCGTCATACTTTAGAGCAAATCAGAGAAATGGAAATGTTGTTTAAAGAATCACCTCATCCAGATGAGAAACAACGGCAACAACTCAGTGAGAAACTTGGTCTTTCTTGTAGGCAAATCAAGTTCTGGTTTCAGAATCGTAGAACTCAAATCAAGGCTATTCACGAGCGTCATGAAAACGCTTTATTGAAAGGAGAAATGGAGAAATTGCGAGAAGAAAACCAAGCTATGAGAGAAATGATCAGTAAATCTTCTTGCCCTAAATGTTGTTCTTCACCTAATTCCGTAGACCCAATTTTCACCAGCTCTGATCAACAACAACAACAACTAGTAACTGAAATTGCTCGACTAAAAGCTGAGGTGGAGAGATTACGAACAGCTCTGGATAAATACGTACCGGCGGGGACATCATCGGGGGAGAACAACGAGGAAGGAATAGAGAGGAGGAGAAATTTGGAGAAATCGAAGAGTATTTTGGGGATGGAGAAAGGTAGGGTTATGATGATAGGGAAGCGGGCGATTGAGGAGGTGGTGAAAATGGGGGATTCCGATGAGCCGCTGTGGGTCAGAAGCGTGGAAACAGGGAGAGAACTACTGAATTACGATGTGTATATGAAGGAATTGGCGGCCGGAAATGAGCGAGGGAAGAGAGAAGTGGAAGCGTCGAGAGAAACCGGCGTGGTGTTCGTGGATCTCCATCGATTGGTTCAGAGCTTCATGGATGTGGTTCAATGGAAGGAAATGTTTCCGTCGATAATCTCCAAGGCGTCGACAATGGAGGTCGTCTGCAATGGCGACGGGACCAACAAGGACGGCGCAGTTCAACTGGTGAGGGTTGCGCAGATGTATGCAGAGCTCCAAATGTTGACCCCAATCCTCCCTCCAAGAGAGATCTTTTTCATTCGAAGTTGCAAGCAACTAAGCTCCGATAAATGGGTCGTCGCCGATGTCTCCATCGACAAAGTCGGAGACCATATCGACTCATCTTCCTCTCGTTGTAGGAAACGCCCATCTGGTTGCATCATCCAAGACACATCTGACGGTCATTGTAAGGTCACGTGGGTAGAGCACTGGGAATGCCACAAGATTGGACTTCACACCATATATCGAACCATTGTCAACAGTGGGTTGATATTCGGGGCGAGGCATTGGAAGGCCACGTTACAAAGCCATTGTGAGTGGCAGGTTTTCTTCATGGCTACCAACGTTCCCATGAAGGATTCCACTGGAATCACCACTGTTGGTGGGAGAAAAAGTGTTCTTCGATTGGCTCAGAGAATGGCCTCTAGTATTTATCAAGCCATTGGTGCTTCAAGCAGCCATACATGGACCAAGATCCAGAGCAAAATAGGTGAAACCATACGTATTGCTTCTAGGAAGAACTTGAAAAACCCACAAGAACCTACTGGTTTGATCTTGTGTGCTGTTGCTTCTGTTTGGCTACCTGTTTCCCCTAAACTCTTGTTCGAATTCTTGATCGATGAATCTCGCCGACCCGAGTGGGATGTAATGCTAAGTGGTGGTCAAGCTGAAATGTTAGCAAACTTTGCCAAAGGACAGAATCGAGGCAATGCCGTAACTATCCAAGCAATAAAATCAGACGAAACCAACACGTGGATTCTACAAGATAGTCTAACGAATGAATACGAATCAACGGTCGTCTATGCTCAAGTTGACATGAATAGCATGAAATCTGTGATGGCCGGGTTCGACCCGAGCAATATCACGACGTTACCGACAGGCTTCTCGATCCTTCCAGATGGACACCCCACAAGGCCATTGGTTATCAGTTCTAGCAAAGAGGAGAGGGAGACAGAAGGAGGCTCATTGCTAACAATAGCATCTCAAATCCTTGTTAGTCCCTCCCCAACAGCCGAAACGACGTCGCAGTCAGTTGATTATGTTAACAATATTATATCACATACATTAGAAAATATTAAAGCAAGCCTAAAAGGTGAGGATGATTGA 2226 46.81 MAVVMSDDHPSRRLKILPSSPALSLTLAGVFGNAAAMDVEFDAPARRDDSYSDNSEPAGSRSAEDLGVDPDDEDEDKLQGNTKKRKNRHTLEQIREMEMLFKESPHPDEKQRQQLSEKLGLSCRQIKFWFQNRRTQIKAIHERHENALLKGEMEKLREENQAMREMISKSSCPKCCSSPNSVDPIFTSSDQQQQQLVTEIARLKAEVERLRTALDKYVPAGTSSGENNEEGIERRRNLEKSKSILGMEKGRVMMIGKRAIEEVVKMGDSDEPLWVRSVETGRELLNYDVYMKELAAGNERGKREVEASRETGVVFVDLHRLVQSFMDVVQWKEMFPSIISKASTMEVVCNGDGTNKDGAVQLVRVAQMYAELQMLTPILPPREIFFIRSCKQLSSDKWVVADVSIDKVGDHIDSSSSRCRKRPSGCIIQDTSDGHCKVTWVEHWECHKIGLHTIYRTIVNSGLIFGARHWKATLQSHCEWQVFFMATNVPMKDSTGITTVGGRKSVLRLAQRMASSIYQAIGASSSHTWTKIQSKIGETIRIASRKNLKNPQEPTGLILCAVASVWLPVSPKLLFEFLIDESRRPEWDVMLSGGQAEMLANFAKGQNRGNAVTIQAIKSDETNTWILQDSLTNEYESTVVYAQVDMNSMKSVMAGFDPSNITTLPTGFSILPDGHPTRPLVISSSKEERETEGGSLLTIASQILVSPSPTAETTSQSVDYVNNIISHTLENIKASLKGEDD 741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1816555 1826961 + ClCG09G001930.2 Cla09g00177 279597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00177 741 MobiDBLite consensus disorder prediction 76 92 - -
Cla09g00177 741 CDD START_ArGLABRA2_like 249 479 - -
Cla09g00177 741 Gene3D - 253 479 IPR023393 -
Cla09g00177 741 ProSiteProfiles 'Homeobox' domain profile. 80 140 IPR001356 GO:0003677
Cla09g00177 741 CDD homeodomain 83 138 IPR001356 GO:0003677
Cla09g00177 741 ProSiteProfiles START domain profile. 245 483 IPR002913 GO:0008289
Cla09g00177 741 SMART HOX_1 82 144 IPR001356 GO:0003677
Cla09g00177 741 MobiDBLite consensus disorder prediction 45 92 - -
Cla09g00177 741 ProSitePatterns 'Homeobox' domain signature. 115 138 IPR017970 GO:0000981|GO:0006355
Cla09g00177 741 Pfam START domain 258 479 IPR002913 GO:0008289
Cla09g00177 741 SUPERFAMILY Homeodomain-like 72 139 IPR009057 -
Cla09g00177 741 SMART START_1 254 480 IPR002913 GO:0008289
Cla09g00177 741 Coils Coil 139 166 - -
Cla09g00177 741 SUPERFAMILY Bet v1-like 248 479 - -
Cla09g00177 741 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN GLABRA 2 20 738 - -
Cla09g00177 741 SUPERFAMILY Bet v1-like 523 727 - -
Cla09g00177 741 Pfam Homeodomain 83 138 IPR001356 GO:0003677
Cla09g00177 741 Coils Coil 193 213 - -
Cla09g00177 741 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 20 738 IPR042160 -
Cla09g00177 741 MobiDBLite consensus disorder prediction 218 240 - -
Cla09g00177 741 Gene3D - 70 151 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g00177 Cla-Chr9:1816555 Cla02g00833 Cla-Chr2:11320437 1.82E-167 dispersed
Cla07g01251 Cla-Chr7:29523587 Cla09g00177 Cla-Chr9:1816555 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61657 PF01852 START 4.20E-49 CL0209 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00177 K09338 - csv:101218545 1294.64