Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00190 ATGGATTTCTGGCCAGAATTCCTTGCAAGCAGTTGGGGTAGAGAATTTGTCGCTGGTGGATTTGGTGGCATCGCCGGCATAATCTCCGGCTACCCACTTGATACTCTTCGAGTAAGGCAACAGCAATCCATTTCTGGTTCTGCTTTGAAAATCTTTCGCAATATCATTGCCAACGATGGCGTTGCTGGTCTTTACAGAGGCATGGCTGCTCCTTTGGCCTCTGTCACTTTCCAGAACGCCGCCGTGTTTCAGATCTACGCCGTTCTTTCTCGGGCATTCAACTCCTCCTCCCAATCCAATGGTGACCCTCCAAGCTATAAGGCCGTGGCCTTTGGAGGATTTGGCACCGGAGCTCTTCAGAGCTTCATCTTGTCGCCGGTAGAGCTTGTGAAGATCCGCCTGCAATTGCAGAGTTCAAGCCATGCAGCAGCATCACACCAACAATTAATTTCTTCTTCCCATAGAGGTCCATTGAGCGTCGCCAAAAGCATCTGCAAAACAGAAGGATTGAGAGGAATTTACAGAGGACTTACCATAACCATGCTGAGAGATGCACCTGCACACGGCATCTATTTCTGGACATATGAGTGCATGAGAGAGCAGTTTCATCCTGGCTGCCGGAAGACCGGCCAAGAGAGCGTCGGCACAATGCTGGTCGCCGGAGGGCTTGCCGGAGTTGCTAGCTGGGTTTTTTGTTATCCCTTGGATGTATTGAAGACTAGAATTCAGGGTCAGACACAAAGTTCACCTCGAAAGTACAATGGAATTGTGGATTGTCTTAGCAAAAGTGTGAGAGAAGAGGGTTACAGAGTGCTATGGCGAGGGCTCGGGACAGCAGTTGCCAGAGCATTTGTGGTAAATGGGGCCATTTTTGCTGCTTATGAGATAACATTGAGGTGTTTGTTTAGCAATGGAAGCAATCAGACACAACAATAA 936 48.82 MDFWPEFLASSWGREFVAGGFGGIAGIISGYPLDTLRVRQQQSISGSALKIFRNIIANDGVAGLYRGMAAPLASVTFQNAAVFQIYAVLSRAFNSSSQSNGDPPSYKAVAFGGFGTGALQSFILSPVELVKIRLQLQSSSHAAASHQQLISSSHRGPLSVAKSICKTEGLRGIYRGLTITMLRDAPAHGIYFWTYECMREQFHPGCRKTGQESVGTMLVAGGLAGVASWVFCYPLDVLKTRIQGQTQSSPRKYNGIVDCLSKSVREEGYRVLWRGLGTAVARAFVVNGAIFAAYEITLRCLFSNGSNQTQQ 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1899539 1900671 - ClCG09G002070.1 Cla09g00190 279610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00190 311 PANTHER CARNITINE/ACYLCARNITINE CARRIER-LIKE PROTEIN 1 303 - -
Cla09g00190 311 SUPERFAMILY Mitochondrial carrier 12 295 IPR023395 -
Cla09g00190 311 Pfam Mitochondrial carrier protein 111 202 IPR018108 -
Cla09g00190 311 Pfam Mitochondrial carrier protein 11 96 IPR018108 -
Cla09g00190 311 Pfam Mitochondrial carrier protein 213 303 IPR018108 -
Cla09g00190 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 104 201 IPR018108 -
Cla09g00190 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 212 300 IPR018108 -
Cla09g00190 311 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 1 303 - -
Cla09g00190 311 Gene3D Mitochondrial carrier domain 105 310 IPR023395 -
Cla09g00190 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 13 92 IPR018108 -
Cla09g00190 311 Gene3D Mitochondrial carrier domain 4 101 IPR023395 -
Cla09g00190 311 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085
Cla09g00190 311 PRINTS Mitochondrial carrier protein signature 119 137 IPR002067 GO:0055085
Cla09g00190 311 PRINTS Mitochondrial carrier protein signature 174 192 IPR002067 GO:0055085
Cla09g00190 311 PRINTS Mitochondrial carrier protein signature 221 243 IPR002067 GO:0055085
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla07g01247 Cla09g00190 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g00190 Cla-Chr9:1899539 Cla09g01136 Cla-Chr9:12725180 9.83E-54 dispersed
Cla07g01247 Cla-Chr7:29498031 Cla09g00190 Cla-Chr9:1899539 5.64E-154 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00190 K15109 - csv:101222165 545.814