Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00192 ATGCTAGGATTTTACAATCCTTACAATTCTAATACCACTTATTTAGGAATCTCCTACAACACTAATCACCAGAAGCCAATCTGGATAGCCAATCCAAACTCCCCATTTCCCAGCAATTCCACTCCCATCAGCCTCACCATCGACGCCAACGGCAGCTTCAAAATTCAAAATGGCTATTATTCCTTTTCACTCTTCGATGTCGGGCAACCAACCACCAGCAGCGCCATATTGCAAGACGACGGCAACTTTGTACTACGAGAGCTGAACAGAGATGGATCGGTTAAGCAAATTCTGTGGCAGAGCTTTGATCATCCAACAGATACTCTGCTTCCCGGAATGAAAATTGGGATCAATCACAAAACAAACTCCACTTGGTCATTAACATCATGGAGAACCATTGAATCTCCCATGGCAGGAGCATTCACTCTGGCAATGAATCCAAACAATACATATCAATTACTGATATTTTTCAGAGGTGCTCTGTTTTGGAGCAGCGGGAATTGGAAAGACGGTTCGTTCGAATTCTTACAATATCTGTCGAATTCCGACCCTTACAACAGCAATCAAAACCAAGAAATGTATATCAATCGAATTTCGAATGAGAATGAAACGTTTTTCATTTACTACATTCCGAAATTCGATCGATCTCCCACTCCTTACGCGTATCGAAATCTATATTACCCAAAATCAGGGGAATTTGTACTACCCCAATTGAGATTAGAAGATGGTGGGAATTTGGGGATTAACGATCAGAGTTCGTACTCTGTTTGCTCCCTGTTTGAAAACGAGGATGGAGGGTGTGTGTGGAAAGAACAGCAGAAAATTCCGGAGTGCAGGAATTGGCTGTATGGGTTTAGCGAGCCATTTAGCCCGAGGTTTGGTTACATGGAGGAGGGAATTAATGGTTCTAATTACAACAAACAAAGTGGGAACTTAACCATGTTTGAATGTGAAACTATTTGCATTTTTGATTGTGATTGCATAGCTATTGGATTTAGCGATGAAGAAGATGGCACCAGCTGTGAGATTTGGAAATCAGGAGCCACGTTTAATTCAGTCTCCGCCGGTTCACGAGAGTATTTCTTTCTGGACCACACGACCCAGACCGGCCAAGTTACGGGGAAAATGAAGAGAAGGTTTGTTTGCGTGATGGGGTTCATATCCGAAGGTTTTAATATTTTAGGAATAATGATAAGACAAATAAGAGATGGGAAAAAGAATCCTGAATTGCAAATTTTTGACTTTGAAACCATTGTTTCTGCCACAAATAATTTTGGAGATGAATGTAAGCTTGGACAAGGTGGTTTTGGACCTGTTTATAAGGGAATTTTGACGGATGGCCAAGAAGTAGCCATTAAAAGATTGTCTAAGAATTCAGGACAAGGATTGGTGGAGTTCAAGAATGAAACTATTTTGATTGCTAAACTTCAACACACAAATTTGGTTAGGCTTATTGGTTGCTGCATTTATAAAGAAGAGAAATTGTTGGTGTATGAGTACATGCCCAACAAAAGCCTTGACTTCTTCCTCTTTGACTCCGAGAAGAAGTTAGCATTAAATTGGGAGAAACGTTTGCACATCATTCAAGGGATCGTTCAAGGACTACTCTACCTTCACTACTACTCAAGGGTACGAATAATTCATCGAGATTTAAAAGTCAGCAATATCTTACTCGATGATGAGATGAATGCAAAAATATCAGATTTTGGTATGGCTAGAGTGTTTAAGCCATCAGAGCATGAAGCAAATACAAGTCGAGTGGTTGGTACATATGGCTATATATCACCAGAATATGCAATGGAGGGCATTTTTTCAATAAAGTCGGACGTGTATAGCTTTGGAATATTATTGTTGGAGATCGTAACAAGTCGAAAAAACTACAACAATTATGACACAGAACGACCACTCAATCTGATAGGATACGCATGGGAATTGTGGGTGAATGGGAGAGGAGAAGAGCTGATTGATTTGGGTTTGTGCAATAACTGTGATGAGAAAGCAAAGGCTTTAAGGTGCATTCATGTTAGTCTTTTGTGCGTCCAACAAGTTCCAGCGGATAGGCCGACGATGTTGGATGTTTATTTCATGATTAATAATGATTCGACTCAACTTCCCTCTCCCAAACAACCTGCTTTTTTTGTTGCTCAAAACCCAAATTCCTCCCAACTACAACTGGTGGAGGTGGTCGATACTATGCTCATACAACCAGCTGCTGAGCCAACACTGGAAATTTCTTCATTCAATACTATGTCACTCTCACTCATGGTTGCTAGCCGTGAATTGCCGCGCACGAGCGATCCCTATTTGTGCTCTTCGACTCGGGCCAGTTTCTCAGCCATGTCGTCCAAGCAAGGAGGGAAGGCAAAGCCTTTGAAGCAACCCAAGGCTGAGAAGAAAGATTACGACGAGAGCACTAAAACCCACTCAGTCCGACCATCTCCAAGACCAGCTCTCGGGCCCACTTTGGAGCAGTCGTCGGTGTCTTACTATGCTTCTCTCCTCCAATCTTGCGTCGTCCGAAAGGCGATAGAGCCTGGAAAGCAGCTTCACGCTCGTATGTGGCAAATGGGTATTAGTTTCAACCCTCTCTTGGCTACTAAACTAGTCAATCTTTACTGCATCTGCAACTCTTTGATAAATGCTCATCTGTTGTTTGATAGAATTTCCAAACGAAATCTGTTCCTTTGGAATGTTATGATACGAGGTTATGCTTGGAATGGACCATATGAGGTTGCAATTTCACTTTACTACCAAATGCAAGATTATGGGCTTGTGCCCGATAAATTTACCTTCCCCTTTGTGCTCAAAGCTTGCTCGGCTCTTTCTGCCATGGAAGAGGGAAAGAAGATTCATAAAGATGTCTTACGCACTGGGTTGGAGAGCGATGTGTTTGTTGGTGCGGCCCTGATTGATATGTATGCTAAATGTGGTTGTGTAGAGAGTGCTCGACAGGTGTTTGATAAAATTGATGAGAGAGATGTTGTGTGTTGGAACTCCATGCTTGCAGCTTATTCTCAAAATGGGCAACCAGATGAGTCGCTTGCTCTCTGCAGAGTGATGGCTTTTGATGGAGTGAAGCCCACCGAGGGGACACTTGTCATCTCCATCTCAGCTTCAGCTGACAATGGCCTTCTACCTCAAGGGAAGGAGCTTCATGGTTATAGTTGGAGACATGGATTTGAATCGAATGACAAGGTGAAAACTGCATTGGTGGATATGTATGCCAAGAGTGGCTCGGTAAATGTTGCTAGGAGCTTGTTTGAGATATTGGAGGAGAAGAGGGTAGTCTCTTGGAACACCATGATCACTGGGTATGCAATGCATGGTCATGCTAATGAAGCTTTGGACCTGTTTAAGGAGATGAAAGGGAAAGCTTTACCTGATCATATAACTTTTGTTGGAGTTCTCGCTGCCTGCAGCCATGGAGGATTGCTTGATGAAGGGAAGATGTATTTCAGATCAATGGTAACTGATTACGTTATATGTCCTACTGTTCAACACTACACTTGTATGATTGATCTACTTGGTCATTGTGGTCATTTGGAAGAAGCTTACAACCTCATAATGGAAATGAGGGTAGAGCCTGATGCTGGTGTCTGGGGTGCATTGCTTCACTCATGCAAAATCCATGGCAATGTGGAGATGGGTGAGCTAGCTTTAGAGAAGTTGATTGAGCTTGAACCTGATGATGGTGGGAACTATGTGATTCTATCGAATATGTATGCTCAAGCTGGTAAATGGGAAGGAGTTGCAAGACTAAGGAATCTCATGATGGATAAGGGATTGAAGAAAAGTATTGCTTGTAGTTGGATAGAAGTGAAAAACAAAGTTCATGCCTTCTTGTCGGAAGATACTTCTCATCCTGAGTCTGAAGCAATTTATTCGGAGTTAAAACGGATAGGGAAGTTGATGAAAGAAGCTGGCTATGCACCGCAGATTGGGTCAGTTTTCCACGATGTTGAAGATGATGAAAAGGTTGATATGGTGTGTTGTCATAGTGAAAGATTGGCCATTGCTTTTGGACTCATTAGCACCCCTGTGGGAACTAAGCTCTTGATTATCAAGAACCTTCGAGTTTGTGAGGATTGCCATGTTGCAATCAAGTTCATATCGAAGATCACAGAGAGGGAAATTACTATTAGAGATGTTAATCGCTATCATCACTTCAAAGATGGACTCTGCTCTTGTGGTGATTTCTGGTGA 4203 42.21 MLGFYNPYNSNTTYLGISYNTNHQKPIWIANPNSPFPSNSTPISLTIDANGSFKIQNGYYSFSLFDVGQPTTSSAILQDDGNFVLRELNRDGSVKQILWQSFDHPTDTLLPGMKIGINHKTNSTWSLTSWRTIESPMAGAFTLAMNPNNTYQLLIFFRGALFWSSGNWKDGSFEFLQYLSNSDPYNSNQNQEMYINRISNENETFFIYYIPKFDRSPTPYAYRNLYYPKSGEFVLPQLRLEDGGNLGINDQSSYSVCSLFENEDGGCVWKEQQKIPECRNWLYGFSEPFSPRFGYMEEGINGSNYNKQSGNLTMFECETICIFDCDCIAIGFSDEEDGTSCEIWKSGATFNSVSAGSREYFFLDHTTQTGQVTGKMKRRFVCVMGFISEGFNILGIMIRQIRDGKKNPELQIFDFETIVSATNNFGDECKLGQGGFGPVYKGILTDGQEVAIKRLSKNSGQGLVEFKNETILIAKLQHTNLVRLIGCCIYKEEKLLVYEYMPNKSLDFFLFDSEKKLALNWEKRLHIIQGIVQGLLYLHYYSRVRIIHRDLKVSNILLDDEMNAKISDFGMARVFKPSEHEANTSRVVGTYGYISPEYAMEGIFSIKSDVYSFGILLLEIVTSRKNYNNYDTERPLNLIGYAWELWVNGRGEELIDLGLCNNCDEKAKALRCIHVSLLCVQQVPADRPTMLDVYFMINNDSTQLPSPKQPAFFVAQNPNSSQLQLVEVVDTMLIQPAAEPTLEISSFNTMSLSLMVASRELPRTSDPYLCSSTRASFSAMSSKQGGKAKPLKQPKAEKKDYDESTKTHSVRPSPRPALGPTLEQSSVSYYASLLQSCVVRKAIEPGKQLHARMWQMGISFNPLLATKLVNLYCICNSLINAHLLFDRISKRNLFLWNVMIRGYAWNGPYEVAISLYYQMQDYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVLRTGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLAAYSQNGQPDESLALCRVMAFDGVKPTEGTLVISISASADNGLLPQGKELHGYSWRHGFESNDKVKTALVDMYAKSGSVNVARSLFEILEEKRVVSWNTMITGYAMHGHANEALDLFKEMKGKALPDHITFVGVLAACSHGGLLDEGKMYFRSMVTDYVICPTVQHYTCMIDLLGHCGHLEEAYNLIMEMRVEPDAGVWGALLHSCKIHGNVEMGELALEKLIELEPDDGGNYVILSNMYAQAGKWEGVARLRNLMMDKGLKKSIACSWIEVKNKVHAFLSEDTSHPESEAIYSELKRIGKLMKEAGYAPQIGSVFHDVEDDEKVDMVCCHSERLAIAFGLISTPVGTKLLIIKNLRVCEDCHVAIKFISKITEREITIRDVNRYHHFKDGLCSCGDFW 1400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1906317 1919890 - ClCG09G002085.1 Cla09g00192 279612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00192 1400 Gene3D Transferase(Phosphotransferase) domain 1 501 709 - -
Cla09g00192 1400 Pfam PPR repeat family 892 938 IPR002885 -
Cla09g00192 1400 Pfam PPR repeat family 1095 1139 IPR002885 -
Cla09g00192 1400 MobiDBLite consensus disorder prediction 780 818 - -
Cla09g00192 1400 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 892 926 IPR002885 -
Cla09g00192 1400 Pfam PPR repeat 1168 1192 IPR002885 -
Cla09g00192 1400 Pfam PPR repeat 1068 1094 IPR002885 -
Cla09g00192 1400 Pfam PPR repeat 968 993 IPR002885 -
Cla09g00192 1400 Pfam PPR repeat 995 1024 IPR002885 -
Cla09g00192 1400 TIGRFAM PPR: pentatricopeptide repeat domain 1096 1122 IPR002885 -
Cla09g00192 1400 TIGRFAM PPR: pentatricopeptide repeat domain 968 996 IPR002885 -
Cla09g00192 1400 TIGRFAM PPR: pentatricopeptide repeat domain 895 927 IPR002885 -
Cla09g00192 1400 TIGRFAM PPR: pentatricopeptide repeat domain 995 1029 IPR002885 -
Cla09g00192 1400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 546 558 IPR008271 GO:0004672|GO:0006468
Cla09g00192 1400 Gene3D Phosphorylase Kinase; domain 1 399 500 - -
Cla09g00192 1400 ProSiteProfiles Protein kinase domain profile. 425 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g00192 1400 SMART serkin_6 425 695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g00192 1400 Pfam Translation machinery associated TMA7 783 805 IPR015157 -
Cla09g00192 1400 Gene3D - 1 103 IPR036426 -
Cla09g00192 1400 Pfam E motif 1210 1272 IPR046848 -
Cla09g00192 1400 SMART blect_4 2 105 IPR001480 -
Cla09g00192 1400 Gene3D Tetratricopeptide repeat domain 1069 1291 IPR011990 GO:0005515
Cla09g00192 1400 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 809 1394 - -
Cla09g00192 1400 PANTHER - 809 1394 - -
Cla09g00192 1400 SUPERFAMILY Protein kinase-like (PK-like) 408 717 IPR011009 -
Cla09g00192 1400 SUPERFAMILY alpha-D-mannose-specific plant lectins 26 132 IPR036426 -
Cla09g00192 1400 CDD STKc_IRAK 431 699 - -
Cla09g00192 1400 Pfam D-mannose binding lectin 27 131 IPR001480 -
Cla09g00192 1400 MobiDBLite consensus disorder prediction 790 809 - -
Cla09g00192 1400 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 993 1027 IPR002885 -
Cla09g00192 1400 CDD B_lectin 2 105 IPR001480 -
Cla09g00192 1400 SUPERFAMILY TPR-like 973 1254 IPR011990 GO:0005515
Cla09g00192 1400 Gene3D Tetratricopeptide repeat domain 945 1058 IPR011990 GO:0005515
Cla09g00192 1400 Gene3D Tetratricopeptide repeat domain 801 944 IPR011990 GO:0005515
Cla09g00192 1400 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1094 1128 IPR002885 -
Cla09g00192 1400 ProSiteProfiles Bulb-type lectin domain profile. 1 98 IPR001480 -
Cla09g00192 1400 Pfam Protein tyrosine and serine/threonine kinase 430 638 IPR001245 GO:0004672|GO:0006468
Cla09g00192 1400 Pfam DYW family of nucleic acid deaminases 1308 1400 IPR032867 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00119 Cla-Chr3:1212508 Cla09g00192 Cla-Chr9:1906317 8.38E-20 dispersed
Cla05g00338 Cla-Chr5:3065865 Cla09g00192 Cla-Chr9:1906317 9.81E-09 dispersed
Cla05g00800 Cla-Chr5:7814121 Cla09g00192 Cla-Chr9:1906317 7.86E-36 dispersed
Cla09g00192 Cla-Chr9:1906317 Cla09g00231 Cla-Chr9:2360162 0 dispersed
Cla11g01244 Cla-Chr11:25935532 Cla09g00192 Cla-Chr9:1906317 4.05E-08 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80782 PF07714 PK_Tyr_Ser-Thr 3.50E-45 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00192 - - cmo:103500579 1146.34