Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00202 ATGGGAATCAATTCCAATCGAGTTGAAAACTTGGAATGTCGTGAAACGGTGTTGACAATTCCGGCGGAGGCAATGCCGGCGCCGCCTCAACCGGAGGTTGAGATTCATAAAGTCTGTTTGCCTCCCAACAAAACTACGTTTCAGAAACTCAAGCACAAGTTATCGGAAGTGTTCTTCCCTGATGATCCGTTTCATAGATTCAAGAACCAAACGTGGGTTAGAAAAGTGCTTTTAGGCCTTCAATTTCTGTTCCCTGTTTTTCAGTGGGGCCCTGATTATACCCTCGCTCTTTTCAAGTCTGACATCGTTTCTGGTCTTACAATTGCTAGCCTTGCTATTCCCCAGGGAATAAGTTATGCGAAACTAGCAAATTTGCCTCCAATCATCGGATTATATTCAAGTTTTGTGCCTCCACTGATATATTCTATCCTTGGGAGCTCTAGGCATCTTGCTGTTGGGCCAGTATCAATTGCCTCTTTGGTCATGGGATCGATGATTACTGAGGCAGTCTCTTATAACGAAAACCCAACTCTGTATCTTAAGTTGGCTTTTACAGCTACTTTCTTTGCTGGTGTATTCCAAGCATCTTTAGGCTTGTTAAGGTTAGGCTTTGTGATTGATTTTCTGTCAAAGGCTACTTTGGTTGGCTTTATGGCTGGTGCAGCAGTCATTGTGTCATTGCAGCAACTCAAAGGGTTGCTTGGAATTGCCCATTTCACCACCAAAATGCAATTTATTCCTGTCATGTCTTCTGTTTTCCACCGCAAAGATGAGTGGTCCTGGCAAACTATTGTTTTAGGCTTCATTTTCCTACTGTTTCTTCTGGGAACAAGGCATATAAGCATCAAGAAACCAAAGCTTTTCTGGATTTCAGCCGCTGCTCCACTGACATCAGTTATTTTGTCCACTCTTTTAGTGTTCTTGCTCAGAGCAAAATTTCCTGGAATCTCAGTGATTGGTCATTTGCCAAAGGGTGTCAATCCTCCATCTATGAACATGCTGTACTTTACTGGTCCTCAATTGGCACTTGCCATTAAAACTGGCATTATAACTGGAATTCTCTCGCTCACCGAAGGAATTGCCGTAGGAAGGACGTTTGCTGGTTTGAAAAACTATCAAGTGGATGGGAATAAAGAAATGATGGCTATTGGTTTTATGAACATGGCTGGATCTTGTTCTTCATGCTATGTCACTACAGGATCATTTTCTCGGTCTGCTGTGAATTACAATGCTGGGGCACAAACAGCAGTTTCAAATGTTGTGATGTCTGCAGCTGTGCTCATAACATTGTTGTTTCTGATGCCACTGTTCCATTATACTCCAAATTTCATCCTAGCAGCCATCATTATAACAGCAGTAATTGGACTAATTGATTACCAAGCAGCCTGTAGGTTGTGGAAAGTTGACAAACTCGATTTTTTAGCTTGTGTTTGTTCTTTCTTTGGTGTTCTTTTCATCTCGGTTCCATTGGGTCTTGCCATCGCAGTTGGAGTCTCTGTTTTCAAGATTCTTCTGCATGTCACCAGGCCAAACACCATGGTTTTGGGGAATATTTCTGGAACTCATATATTCCAAAACCTTGACCGTTACCGGGATGCCTCAAGGGTGCCTTCATTTCTCATTCTTTCCATTGAATCTCCAATCTACTTTGCAAATTCAACATACCTACAAGAAAGGATTCTTAGGTGGGTTAGGGAAGAAGAAGAGCGGATAAAATCGACCAACGATAGCCCACTGAAATGTGTAATACTAGACATGACAGCTGTGACGTCCATAGATACAAGTGGTATAGAAACCGTATGTGAGCTTAGGAAGATGTTGATGCAAAAATCATTGCAGTTTGTGCTAGCAAATCCTGGTGGAAATGTGATGGAAAAACTGTATAAATCAAAGGTGTTGGAGCAGTTCGAGTTTAACGGTCTCTACCTCTCAGTTGGAGAAGCTGTGAAGGACATTTCTTCTGTATGGAAGAGGCTGCCATAA 1983 42.16 MGINSNRVENLECRETVLTIPAEAMPAPPQPEVEIHKVCLPPNKTTFQKLKHKLSEVFFPDDPFHRFKNQTWVRKVLLGLQFLFPVFQWGPDYTLALFKSDIVSGLTIASLAIPQGISYAKLANLPPIIGLYSSFVPPLIYSILGSSRHLAVGPVSIASLVMGSMITEAVSYNENPTLYLKLAFTATFFAGVFQASLGLLRLGFVIDFLSKATLVGFMAGAAVIVSLQQLKGLLGIAHFTTKMQFIPVMSSVFHRKDEWSWQTIVLGFIFLLFLLGTRHISIKKPKLFWISAAAPLTSVILSTLLVFLLRAKFPGISVIGHLPKGVNPPSMNMLYFTGPQLALAIKTGIITGILSLTEGIAVGRTFAGLKNYQVDGNKEMMAIGFMNMAGSCSSCYVTTGSFSRSAVNYNAGAQTAVSNVVMSAAVLITLLFLMPLFHYTPNFILAAIIITAVIGLIDYQAACRLWKVDKLDFLACVCSFFGVLFISVPLGLAIAVGVSVFKILLHVTRPNTMVLGNISGTHIFQNLDRYRDASRVPSFLILSIESPIYFANSTYLQERILRWVREEEERIKSTNDSPLKCVILDMTAVTSIDTSGIETVCELRKMLMQKSLQFVLANPGGNVMEKLYKSKVLEQFEFNGLYLSVGEAVKDISSVWKRLP 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1986567 1990707 - ClCG09G002190.1 Cla09g00202 279622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00202 660 Pfam Sulfate permease family 98 477 IPR011547 GO:0016021
Cla09g00202 660 Gene3D STAS domain 509 654 IPR036513 -
Cla09g00202 660 ProSiteProfiles STAS domain profile. 529 652 IPR002645 -
Cla09g00202 660 PANTHER SULFATE TRANSPORTER 28 658 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cla09g00202 660 ProSitePatterns SLC26A transporters signature. 127 148 IPR018045 GO:0008271|GO:0008272
Cla09g00202 660 PANTHER SULFATE TRANSPORTER 3.4-RELATED 28 658 IPR030317 -
Cla09g00202 660 Pfam STAS domain 530 648 IPR002645 -
Cla09g00202 660 SUPERFAMILY SpoIIaa-like 534 650 IPR036513 -
Cla09g00202 660 CDD STAS_SulP_like_sulfate_transporter 530 645 - -
Cla09g00202 660 TIGRFAM sulP: sulfate permease 85 648 IPR001902 GO:0015301|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g00202 Cla-Chr9:1986567 Cla09g00680 Cla-Chr9:6486960 0 dispersed
Cla11g00117 Cla-Chr11:1459483 Cla09g00202 Cla-Chr9:1986567 0 transposed
Cla06g01018 Cla-Chr6:21746864 Cla09g00202 Cla-Chr9:1986567 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00202 K17471 - csv:101203079 1226.08