Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00216 ATGAGAAAAGAAGAAAATCATATCAGGGCTAATATTGGGGAATTCCCTGGTAGAATTACACGTGCTCGGGCTGCTGCATTTAGTGCATCAGCACAGCTGCCTCCAAAAGTTCCTGCACATCATCAAGAGAGGCGGGTTGCCCGAGCTAATCTGAAAAGAGCTGCTTCTGAAGAAAATAGCTGCCATTCTATTGCTAAATCAGCTCGACCATGTAAAAGGAGGGCTGTGCTTCAGGATGTCAGCAATATAGGCTGTGAACCTTCGTACTCAAATTGTTTCAATGCAGCTAAAATTGAGCCCAATAGTAGTAAGCCGACAATCAGAAACCATCTCAAGAAGTCCAAAGGAGCCTCATCAGTTGGTGTGGCTAACTCCAAGGTTCCTCTAGGTCTTAGAACCAAAGGAGCTTCATCAGTTGGTGGGGCTTACTCCAAGCCTCTTGATCTTAGAACACAAGGTGTACAATCAAATGTCAAATCAAAAGCCAAGTTGAAAGTTGAGCATTCAAGTAATTCTGAAGACCCCGATACACATCATCGGGTAAGTGGTATAAAGGAAGAGGTCACAAGTGATTTTCGGGATGATAATTGGAGGTCTCAAAGTCCTTCAGAGTCTCAAAATTTTCAAAATAAAGATAAAGTGTTGCTTCTGGGGACAAAAAGCAACCTGGACATTGCAGACATTGATTGTAATGACAGAGATGCTCAGCTGTGCACTGTCTATGCCCAGGATATCTATAACAATTTACGTGTAGCTGAGCTAACCAGAAGACCACGTCCCAATTTCATGGAAACAGTGCAGACTGATATTACCCAAAGCATGCGGGGTATATTGGTTGATTGGCTTGTAGAGGTGTCGGAGGAATACAAGTTAGTACCAGATACACTCTACCTAACTGTTTTTTTCATCGATTGGTTTCTCTCCCAAAATTACATCGAGAGACAAAAGCTTCAACTGTTGGGTATCTCTTGCATGTTAATTGCCTCGAAGTATGAAGAAATTTGTGCACCACGTGTTGAAGACTTTTGTTTCATCACTGACAGCACCTACACAAAAGAGGAGGTACTGAATATGGAAGGTCAAATATTGAAGCATATGGGCTTTCAACTTTCTGCACCAACTGCAAAATCTTTCCTCAGGAGATATGTTCGAGCTGCACAAACGACATATAAGACCCCTAGTCTTGAACTCGAGTGCCTCGCCAACTATCTGGCTGAATTAACACTGGTTGACTACAGATTCCTGAATTTTCTTCCCTCAGTTATAGCTGCATCAGCTGTATTTCTTTCCAAATGGACGTTGGATCAGTCGAGTCACCCATGGAATTCAACACTGGAATATTATACCTCATATAAAGCATCAGATCTGAAACAAACTGTTGTTGCTTTACAAGATTTACAGTTGAACACCAACGGTTGTCCACTTAGTTCGATTCGTGTCAAGTATCGGCAAGAAAAGGTAAATGATTCAAAGCTGTTGCAACTTTGTCTTCCCCAAAATTACTTGATACGCTATTCTGAACCACGTGTTGGATGA 1536 41.93 MRKEENHIRANIGEFPGRITRARAAAFSASAQLPPKVPAHHQERRVARANLKRAASEENSCHSIAKSARPCKRRAVLQDVSNIGCEPSYSNCFNAAKIEPNSSKPTIRNHLKKSKGASSVGVANSKVPLGLRTKGASSVGGAYSKPLDLRTQGVQSNVKSKAKLKVEHSSNSEDPDTHHRVSGIKEEVTSDFRDDNWRSQSPSESQNFQNKDKVLLLGTKSNLDIADIDCNDRDAQLCTVYAQDIYNNLRVAELTRRPRPNFMETVQTDITQSMRGILVDWLVEVSEEYKLVPDTLYLTVFFIDWFLSQNYIERQKLQLLGISCMLIASKYEEICAPRVEDFCFITDSTYTKEEVLNMEGQILKHMGFQLSAPTAKSFLRRYVRAAQTTYKTPSLELECLANYLAELTLVDYRFLNFLPSVIAASAVFLSKWTLDQSSHPWNSTLEYYTSYKASDLKQTVVALQDLQLNTNGCPLSSIRVKYRQEKVNDSKLLQLCLPQNYLIRYSEPRVG 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2169330 2175753 + ClCG09G002380.1 Cla09g00216 279636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00216 511 MobiDBLite consensus disorder prediction 101 120 - -
Cla09g00216 511 CDD CYCLIN 373 460 IPR013763 -
Cla09g00216 511 SMART Cyclin_C_2 373 495 IPR004367 -
Cla09g00216 511 Gene3D - 244 488 - -
Cla09g00216 511 MobiDBLite consensus disorder prediction 131 208 - -
Cla09g00216 511 PIRSF Cyclin_A_B_D_E 35 495 IPR039361 -
Cla09g00216 511 SUPERFAMILY Cyclin-like 234 370 IPR036915 -
Cla09g00216 511 MobiDBLite consensus disorder prediction 161 198 - -
Cla09g00216 511 Gene3D - 258 371 - -
Cla09g00216 511 PANTHER CYCLINS 51 488 IPR039361 -
Cla09g00216 511 PANTHER CYCLIN-A2-4 51 488 - -
Cla09g00216 511 Pfam Cyclin, N-terminal domain 244 370 IPR006671 -
Cla09g00216 511 CDD CYCLIN 274 363 IPR013763 -
Cla09g00216 511 SMART cyclin_7 377 465 IPR013763 -
Cla09g00216 511 SMART cyclin_7 280 364 IPR013763 -
Cla09g00216 511 Pfam Cyclin, C-terminal domain 373 491 IPR004367 -
Cla09g00216 511 SUPERFAMILY Cyclin-like 373 487 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01761 Cla-Chr5:29442722 Cla09g00216 Cla-Chr9:2169330 2.52E-124 dispersed
Cla08g01600 Cla-Chr8:28660635 Cla09g00216 Cla-Chr9:2169330 1.81E-76 dispersed
Cla09g00216 Cla-Chr9:2169330 Cla11g01821 Cla-Chr11:31856446 3.39E-54 dispersed
Cla08g00616 Cla-Chr8:18110480 Cla09g00216 Cla-Chr9:2169330 4.28E-104 transposed
Cla08g01290 Cla-Chr8:25779251 Cla09g00216 Cla-Chr9:2169330 2.46E-111 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00216 K06627 - csv:101222299 893.649