Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00248 ATGACATATTTTCCTGGTTTAAGTAATCAAAGAGACTCCATGTTAGGTGATCAGAAACTTGGTTCTTCTTGCCAAGAACAGCCTCTTTGTTCTGGGAATTTGATGATGTTCATGAATCAAGACCCTTCTTGCAGAGATTATTCAGAGATTTTTTCTGGGGTTTCTTCAAACTATGTTGAAACTGTGGGAGATAGAAGTAATGTTGAAATGGCTTTCATTCCACCAGTTGTGGGAATTTTAGATGACTCAAATTTCCAATGTCAAGGTGTTTCACTTAGCCTTTCCACACACTCACCCTCTGTTGTTTCTATGCCTTCATTTCCTCACCAATATCAGACCCCTGCTATGCCTTCTTCATTCATCAATAATGCACCTCCTTTGATCTTCGAGAAGAGGCCGAATCTGAAACCTTCTATAAATGATGCGAAAAATGGCATGTATATAGCGGTGGGTTCTGGATATTCGACATTGAATTTGGTATACATCGAAGCTGCACAGCAGTTGCTCGACGAAATGGTTAGCATCCGCGAAGCTTTGAAAGAGTTGAAGTCTAAGAAACTCAAAGCTTCCAATGGTTTGGGTGTTGATTCCTGCAGAGAAAATGATGGTGGATCTAATGATTTGACTGGGGAGATGTGTGGCAATGTGAGGCAGTCGCCGATTGCCAATCCGTCAGGGGATCTATCGCCTACCGAACGTCAGGACTTGAAGAACAAAAACTCAAAGCTTTTGTCCTTGTTGGGTGAGGTAAGCCAACAGGTGGATCGAAGATACAGGCAATATTACCAACAGCTGCAATATTTGGCGTCGTCTTTTGACATGGTAGCAGGCCGAGGGGCTGCAGATTTCTACACTGCACTCGCACACCAAACTATTTCGTGCCACTTTCGCCGCTTGCGAGATGCAATCAATGCACAGATTGAGGTCACCAGGAGAACCTTGGGGGAGCAAGATGCTTTACATTCTGGTCAAGAGGGCATTCCTCGTCTCCGCTTTGTCGACCAACACCTCAGGCAACAGAGAGCTCTTCAGCAGCTTGGTGTCACGCCACATAGTTGGAGGCCTCAACGAGGGCTTCCCGAAAGTTCCGTGTCGATTCTTCGCGCTTGGCTGTTCGAACACTTCCTCCATCCATATCCCAAGGACTCCGAGAAACTTAAGCTAGCTAGACAAACTGGCCTGACCAGAAACCAAGTCGCAAACTGGTTTATAAATGCACGTGTTCGGCTATGGAAACCAATGGTAGAGGAGATGTACAAAGAAGAATTTGGAGACTCCAACATTGACATCAAATCCTCACCAGAAAATGCATCCAAAGTATCATGGAACAATTCACTATTCTCCGAAGATAAGGGAGGAGACGAGATGCACGACAGCATGAAATCTGCAGCAAACAACGGCGAGCGAGTCCTCTACCGCCCGTGTGCTACCGACGACATGATCAACTCGAGTAACTTCTCAATGGGAGGAGGAGGAGATGTTTCACTTGCACTGGAGTTGAAGCATTGTGAAGGTGATGAATTTGGGATGTTTGGGAATAACAATAGAATGGTTGGTTCTGTGGAGCTTGAGGCACAAGATTTTCCATGTTTGGAACCAGAAAGACATCATCAATGCAGGCTCACAAGTTCAAATATGTTGCATGATTTTGTAGTTTAA 1659 44.91 MTYFPGLSNQRDSMLGDQKLGSSCQEQPLCSGNLMMFMNQDPSCRDYSEIFSGVSSNYVETVGDRSNVEMAFIPPVVGILDDSNFQCQGVSLSLSTHSPSVVSMPSFPHQYQTPAMPSSFINNAPPLIFEKRPNLKPSINDAKNGMYIAVGSGYSTLNLVYIEAAQQLLDEMVSIREALKELKSKKLKASNGLGVDSCRENDGGSNDLTGEMCGNVRQSPIANPSGDLSPTERQDLKNKNSKLLSLLGEVSQQVDRRYRQYYQQLQYLASSFDMVAGRGAADFYTALAHQTISCHFRRLRDAINAQIEVTRRTLGEQDALHSGQEGIPRLRFVDQHLRQQRALQQLGVTPHSWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKLKLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSNIDIKSSPENASKVSWNNSLFSEDKGGDEMHDSMKSAANNGERVLYRPCATDDMINSSNFSMGGGGDVSLALELKHCEGDEFGMFGNNNRMVGSVELEAQDFPCLEPERHHQCRLTSSNMLHDFVV 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2482644 2484800 + ClCG09G002800.1 Cla09g00248 279668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00248 552 SMART HOX_1 353 417 IPR001356 GO:0003677
Cla09g00248 552 SUPERFAMILY Homeodomain-like 354 420 IPR009057 -
Cla09g00248 552 CDD homeodomain 353 414 IPR001356 GO:0003677
Cla09g00248 552 Gene3D - 350 427 - -
Cla09g00248 552 MobiDBLite consensus disorder prediction 198 234 - -
Cla09g00248 552 Pfam Associated with HOX 161 303 IPR006563 -
Cla09g00248 552 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 25 467 - -
Cla09g00248 552 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 25 467 - -
Cla09g00248 552 Pfam Homeobox KN domain 370 409 IPR008422 GO:0003677|GO:0006355
Cla09g00248 552 ProSiteProfiles 'Homeobox' domain profile. 350 413 IPR001356 GO:0003677
Cla09g00248 552 Coils Coil 162 185 - -
Cla09g00248 552 MobiDBLite consensus disorder prediction 211 231 - -
Cla09g00248 552 SMART prehox3 143 305 IPR006563 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g02176 Cla-Chr2:36850444 Cla09g00248 Cla-Chr9:2482644 3.34E-74 dispersed
Cla09g00248 Cla-Chr9:2482644 Cla11g00386 Cla-Chr11:4333548 5.01E-103 dispersed
Cla09g00248 Cla-Chr9:2482644 Cla10g01741 Cla-Chr10:33296516 2.47E-85 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61662 PF07526 POX 1.60E-35 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00248 - - csv:101222692 959.518