Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00253 ATGGAAGGTGCTTCGCTTCACGGAACGCTTCACGCCACAATCTATGAAGTCGACAGGTTGCATACTGGTGGTGGATCCAATCTCTTCAGCATGTTGAAGCAAAACTTTGAGGAGGCTGTTGGAATTGGCAAAGGTGAAACCAAACTATATGCGACTATAGATTTAGAAAAGGCTAGGGTTGGGAGGACACGAATATTGGAAACTGAACCCTCTAATCCAAGATGGTATGAATCTTTTCACATTTACTGTGCCCATAAGGCATCAAATGTTATCTTCACCGTGAAGGATGATAATCCCATTGGTGCAACTTTGATTGGACGTGCATATGTACCTGTGGAAGACATCTTGGATGGGGAGGAAGTTGACAGATGGGTTCCAATCTTAGATGAAGAGAAAAATCCAATTGAAGGAGAATCAAAGATTCATGTAAAGCTTCAATACTTCAGTGTTACTAAAGATCGCAACTGGGGTCGTGGTATAAGAAGTCGTAAATTTCCTGGAGTTCCCTATACATATTACTCACAGAGACAAGGTTGTAAGGTTTCTTTGTATCAAGATGCTCATATCCCCGATAATTTTATTCCTAAAATTCCTCTTGCTGGAGGAAAAAATTATGCTCCCGCCAGATGTTGGGAAGATATTTTTGATGCCATACAAAATGCCAAACACCTGATCTACATCACAGGATGGTCTGTTTATACAGAAATTGCCTTGGTTAGGGACTCAAGGAGGCCAAAGCCAGGCGGAGACACCATGCTTGGTGAACTTCTTAAGAAGAAAGCAAGTGAAGGGGTCAGAGTTCTTATGCTTGTCTGGGATGACAGAACATCAGTCGGTTTACTTAAAAAAGATGGTCTGATGGCTACTCATGATGAAGAAACTGAACGTTACTTCCAAGATACAGATGTGCACTGTGTCTTGTGTCCTCGTAATCCTGATGATGGTGGAAGCATTGTTCAAGATCTACAAATCTCTACCATGTTCACTCATCACCAGAAGATTGTTGTGGTGGATAGCCCAATGCCAAGTGGAGAGTCAGATAAGAGGAGAATTGTGAGTTTCGTTGGTGGCATTGATCTATGTGATGGTAGGTATGACACACCCTTTCACTCCCTTTTCAGGACATTGGATACTGCACATCATGACGATTTCCATCAACCAAATTTTGCTGGTGCATCAATAACAAAAGGTGGACCGAGGGAACCTTGGCACGATATCCATTCCCGGCTTGAAGGGCCCATTGCCTGGGATGTTTTGTTCAATTTTGAGCAAAGGTGGAGGAAACAAGGTGGGAAGGATGTACTTGTGCAGCTACGAGAGCTTGATGAAATAATTATTCCTCCGTCTCCTGTTATGTACCCAGACGACCATGACACCTGGAATGTTCAGTTGTTTAGATCAATAGATGGTGGGGCAGCTTTTGGCTTTCCTGAGACCCCTGAAGATGCTGCTAGAGCTGGTCTTGTCAGTGGGAAAGATAACATTATTGATAGAAGCATTCAGGACGCTTACATTAATGCCATTCGGCGGGCTAAGAATTTTATTTATATTGAAAACCAATATTTCCTTGGAAGTTGTTTTGGATGGTCTCCTGATAATATCAAGCCTGAGGATATTGGTGCCTTGCACTGTATCCCAAGGGAGCTTTCCCTCAAGATCGTTAGTAAGATTTTAGCAGGAGAAAGGTTCACTGTCTATGTTGTTGTCCCAATGTGGCCAGAAGGTCTCCCAGAAAGTGGATCGGTTCAGGCAATATTAGATTGGCAGAGGAGGACATTTGAAATGATGTATAAAGACGTGATTCAGGCTCTTAGAGATCAAGGTAGCGAAGAAGACCCTCGCAACTACTTGACATTCTTCTGTCTTGGCAACCGGGAAGTCAAGAGGTCTGGAGAATATCAACCTGCAGAGGCACCAGAGGAGGATTCTGATTATTTAAGAGCCCAGCAGGCCAGGCGTTTCATGATTTATGTTCACACCAAGATGATGATTGTTGATGATGAGTACATAATTGTTGGATCGGCGAATATCAACCAGAGATCCATGGATGGTGCAAGGGACTCTGAGATAGCAATGGGCGCTTATCAGCCATATCATCTGTCAGCCCGGGAACCTGCACGTGGTCAAGTTCACGGATTCCGTATGGCTCTATGGTATGAACATCTTGGTATGCTTGATGAATCTTTCCTTCGTCCAGAAAGTGAAGAATGTGTTGCAAAGGTAAACAGAATTGCTGATAAGTATTGGGATCTGTATTCAAGTGAATCACTCGAGAGGGACTTGCCCGGTCACCTCCTCCGCTATCCAGTTGGCATATCCAGTGAAGGAGAAGTCACAGAACTTCCAGGATTCGAGTTCTTCCCCGACACCAAAGCTCGTATACTCGGGACGAAATCCGACTACCTCCCTCCTATCCTCACTACCTAG 2427 43.96 MEGASLHGTLHATIYEVDRLHTGGGSNLFSMLKQNFEEAVGIGKGETKLYATIDLEKARVGRTRILETEPSNPRWYESFHIYCAHKASNVIFTVKDDNPIGATLIGRAYVPVEDILDGEEVDRWVPILDEEKNPIEGESKIHVKLQYFSVTKDRNWGRGIRSRKFPGVPYTYYSQRQGCKVSLYQDAHIPDNFIPKIPLAGGKNYAPARCWEDIFDAIQNAKHLIYITGWSVYTEIALVRDSRRPKPGGDTMLGELLKKKASEGVRVLMLVWDDRTSVGLLKKDGLMATHDEETERYFQDTDVHCVLCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSPMPSGESDKRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFAGASITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDVLVQLRELDEIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSCFGWSPDNIKPEDIGALHCIPRELSLKIVSKILAGERFTVYVVVPMWPEGLPESGSVQAILDWQRRTFEMMYKDVIQALRDQGSEEDPRNYLTFFCLGNREVKRSGEYQPAEAPEEDSDYLRAQQARRFMIYVHTKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGAYQPYHLSAREPARGQVHGFRMALWYEHLGMLDESFLRPESEECVAKVNRIADKYWDLYSSESLERDLPGHLLRYPVGISSEGEVTELPGFEFFPDTKARILGTKSDYLPPILTT 808
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2509973 2514678 + ClCG09G002850.1 Cla09g00253 279673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00253 808 SUPERFAMILY Phospholipase D/nuclease 442 738 - -
Cla09g00253 808 Gene3D Endonuclease Chain A 480 698 - -
Cla09g00253 808 Gene3D C2 domain 7 157 IPR035892 -
Cla09g00253 808 Gene3D Endonuclease Chain A 200 442 - -
Cla09g00253 808 PANTHER PHOSPHOLIPASE D 6 808 IPR015679 -
Cla09g00253 808 PANTHER PHOSPHOLIPASE D 6 808 - -
Cla09g00253 808 CDD C2_plant_PLD 6 148 - -
Cla09g00253 808 SUPERFAMILY Phospholipase D/nuclease 151 436 - -
Cla09g00253 808 ProSiteProfiles C2 domain profile. 1 125 IPR000008 -
Cla09g00253 808 Pfam Phospholipase D C terminal 726 798 IPR024632 -
Cla09g00253 808 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 326 364 IPR001736 GO:0003824
Cla09g00253 808 SMART pld_4 326 364 IPR001736 GO:0003824
Cla09g00253 808 SMART pld_4 654 681 IPR001736 GO:0003824
Cla09g00253 808 SMART C2_3c 9 124 IPR000008 -
Cla09g00253 808 Pfam Phospholipase D Active site motif 655 681 IPR001736 GO:0003824
Cla09g00253 808 Pfam Phospholipase D Active site motif 326 364 IPR001736 GO:0003824
Cla09g00253 808 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 654 681 IPR001736 GO:0003824
Cla09g00253 808 PIRSF PLD_plant 1 808 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Cla09g00253 808 Pfam C2 domain 33 127 IPR000008 -
Cla09g00253 808 CDD PLDc_pPLDalpha_2 492 701 - -
Cla09g00253 808 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 149 IPR035892 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla07g01209 Cla09g00253 CCT
Cla07g01209 Cla09g00253 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01396 Cla-Chr8:26830441 Cla09g00253 Cla-Chr9:2509973 0 dispersed
Cla09g00253 Cla-Chr9:2509973 Cla10g00328 Cla-Chr10:4258401 0 dispersed
Cla07g01298 Cla-Chr7:30122992 Cla09g00253 Cla-Chr9:2509973 0 transposed
Cla07g01209 Cla-Chr7:29089261 Cla09g00253 Cla-Chr9:2509973 0 wgd
Cla08g01332 Cla-Chr8:26184202 Cla09g00253 Cla-Chr9:2509973 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00253 K01115 - csv:101206113 1610.51