Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00287 AGTGAAGAAGGGAAGAAGAGGGTTGAAATGGGAGAGAGGTTAGGAGGTTATGCTATGAATCTTCGTGGTATTTTACTTCCCATGTGGGTTTTCTATTCCTTCTTCCCAATAATTGATGCCAGACCACACCTTGCTGGGTTTTCAATTTCTAGTACTGTTTTTGCTTCTCACACACATCCCATCTCTCTCATTGTTGCCAAAATGGAAGCTCAATCCCCAGGAGTTGCGGAGGTTAAAGTAGTTCACCACCAAGATTTGAACAAGAGAATTCTTATAGCATTGATTGTTTCTTCCACTCTTCTTGGAGTTATACTGCTGTTCCTTTTGTGTTTTTGGATATATCGTCGAAAAACGTCGAACCTTGATGATGGAAAATGTCAAAAGAATTTGGAGACTTCGAAAGGGATGCCGCTAAATCCCATCATATCCAGATTTAACTCCTTGAGGTTGGCTAACTTTAAAGGTTCGGTTTCCACCATCGACTATAAACTTTTGGAAGCAGCAACTGACAACTTCAGCAAAAGCAATGTTTTGGGTGAAGGCGGTACGGGACATGTTTACAAAGCTTGCTTCAATGATAAATTGCTGGCAGCTGTGAAGAAAATAGACAATGGAGGACCGGACGCTGAAAGAGAATTCGAGAATGAGGTGAATTGGTTGTGTAAAATACGACATCAAAACATAATCAAACTCTTGGGGCACTGCATTCATGGCGAGACACGGTTTCTCGTTTACGAGATGATGCAGAATGGATCTTTGGAGTCTCAGTTGCACGGACCATCTCACGGATCAGCTTTAACTTGGCATATCCGGATGAAGATTGCTGTTGATGTTGCAAGAGGCTTGGAATATCTTCACGAACATCGAAGTCCTCCTGTTGTTCATCGGGATTTGAAATCGTCAAATATCCTTTTAGATTCAGACTTTAATGCCAAGCTCTCTGACTTTGGCCTTACTGTAAACTTGGGAGCTCAAAATAAAAACATAAAGCTCTCAGGAACTTTGGGTTATGTCGCCCCAGAGTACCTTTTAGACGGTAAACTAACAGATAAAAGTGATGTCTATGCGTTCGGAGTTGTTCTTTTGGAGCTTCTGACCGGGAAAAAACCCGTTGAGAAGATGGGACCTACTCAATCCCAATCTCTAGTTTCATGGGCAATCCCGCAGCTCAGTGACAGATCAAAGCTACCGAAAATTGTCGATCCTGTGATAAGGGACACGATGGATTTGAAGCACTTATACCAAGTTGCTGCTGTAGCTGTTTTATGTGTACAATCAGAACCGAGTTACCGACCGTTAGTTACCGACGTTTTGCATTCCCTCATCCCTCTTGTACCTGTAGAGCTTGGAGGATCTCTGAGAATTACAGAACCTCTGCATCCGAAAGTGCCTTCGTCGACCCGCTAA 1407 42.86 SEEGKKRVEMGERLGGYAMNLRGILLPMWVFYSFFPIIDARPHLAGFSISSTVFASHTHPISLIVAKMEAQSPGVAEVKVVHHQDLNKRILIALIVSSTLLGVILLFLLCFWIYRRKTSNLDDGKCQKNLETSKGMPLNPIISRFNSLRLANFKGSVSTIDYKLLEAATDNFSKSNVLGEGGTGHVYKACFNDKLLAAVKKIDNGGPDAEREFENEVNWLCKIRHQNIIKLLGHCIHGETRFLVYEMMQNGSLESQLHGPSHGSALTWHIRMKIAVDVARGLEYLHEHRSPPVVHRDLKSSNILLDSDFNAKLSDFGLTVNLGAQNKNIKLSGTLGYVAPEYLLDGKLTDKSDVYAFGVVLLELLTGKKPVEKMGPTQSQSLVSWAIPQLSDRSKLPKIVDPVIRDTMDLKHLYQVAAVAVLCVQSEPSYRPLVTDVLHSLIPLVPVELGGSLRITEPLHPKVPSSTR 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2784817 2787686 + ClCG09G003230.1 Cla09g00287 279707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00287 468 SUPERFAMILY Protein kinase-like (PK-like) 149 441 IPR011009 -
Cla09g00287 468 Pfam Protein kinase domain 173 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g00287 468 ProSiteProfiles Protein kinase domain profile. 172 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g00287 468 Gene3D Transferase(Phosphotransferase) domain 1 248 446 - -
Cla09g00287 468 ProSitePatterns Protein kinases ATP-binding region signature. 178 201 IPR017441 GO:0005524
Cla09g00287 468 ProSitePatterns Serine/Threonine protein kinases active-site signature. 293 305 IPR008271 GO:0004672|GO:0006468
Cla09g00287 468 PANTHER OS01G0750732 PROTEIN 21 460 - -
Cla09g00287 468 Gene3D Phosphorylase Kinase; domain 1 140 247 - -
Cla09g00287 468 PANTHER BNAC02G46490D PROTEIN 21 460 - -
Cla09g00287 468 CDD STKc_IRAK 178 444 - -
Cla09g00287 468 SMART serkin_6 172 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g00287 Cla-Chr9:2784817 Cla03g01614 Cla-Chr3:32011279 1.33E-92 dispersed
Cla05g01702 Cla-Chr5:28767716 Cla09g00287 Cla-Chr9:2784817 2.23E-26 wgd
Cla08g01355 Cla-Chr8:26371507 Cla09g00287 Cla-Chr9:2784817 5.94E-177 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80785 PF00069 Pkinase 2.20E-47 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00287 - - bhj:120085274 877.085