Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00288 ATGGCCCGACCGCAACAGCGCTATCGTGGCGTTCGCCAACGACATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCTCTATTGAAGACGAGAATATGGTTAGGGACATTCGAGACGGCGGAGGATGCAGCCCGAGCTTACGACGAGGCAGCACGGCTGATGTGCGGTCCAAAGGCACGAACCAACTTCCAATATAATCCGAACGACCAACAGTCGTCGTCGTCTTCTTCCTCCTCTTCGTCCAAGCTTCTCCCCGCCGCGCTGATAGCGAAATTACATAAATGCCATTTGGCCTCACTCCAAATTGCGAAAAAACACGTCCACAGACAACACCCCGGATTCGAGCCCAACTACACCGCCTACGGCGGATCACCTCCACCGAGCATTGCCGGAACCACCACAGGCCCGTGGACGCCGGAAGATACGTGGGTCTACTCCGACGAAGGTCAAATGGAGATGAATAACAATAATAATAATAACAACATTCATCATCAACAATGCCTTCAACCTCTTGAAGATGATCATATTGAACAAATGATACAAGAGCTGCTACATCTCGGACCATTCGAAATTATTACATAA 582 50.69 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFQYNPNDQQSSSSSSSSSSKLLPAALIAKLHKCHLASLQIAKKHVHRQHPGFEPNYTAYGGSPPPSIAGTTTGPWTPEDTWVYSDEGQMEMNNNNNNNNIHHQQCLQPLEDDHIEQMIQELLHLGPFEIIT 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2794654 2795447 - ClCG09G003240.2 Cla09g00288 279708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00288 193 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Cla09g00288 193 PANTHER ETHYLENE RESPONSE FACTOR 1 192 - -
Cla09g00288 193 MobiDBLite consensus disorder prediction 115 135 - -
Cla09g00288 193 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Cla09g00288 193 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Cla09g00288 193 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Cla09g00288 193 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Cla09g00288 193 MobiDBLite consensus disorder prediction 61 80 - -
Cla09g00288 193 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Cla09g00288 193 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Cla09g00288 193 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 192 - -
Cla09g00288 193 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01112 Cla-Chr6:23898441 Cla09g00288 Cla-Chr9:2794654 1.03E-31 dispersed
Cla07g00473 Cla-Chr7:6665718 Cla09g00288 Cla-Chr9:2794654 2.43E-10 dispersed
Cla07g01182 Cla-Chr7:28806666 Cla09g00288 Cla-Chr9:2794654 4.17E-47 dispersed
Cla09g00288 Cla-Chr9:2794654 Cla11g00279 Cla-Chr11:3216107 8.12E-32 dispersed
Cla05g01700 Cla-Chr5:28752470 Cla09g00288 Cla-Chr9:2794654 3.41E-61 wgd
Cla08g01357 Cla-Chr8:26394613 Cla09g00288 Cla-Chr9:2794654 1.92E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61665 PF00847 AP2 8.20E-12 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00288 - - cmo:103499832 309.686