Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla09g00288 | ATGGCCCGACCGCAACAGCGCTATCGTGGCGTTCGCCAACGACATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCTCTATTGAAGACGAGAATATGGTTAGGGACATTCGAGACGGCGGAGGATGCAGCCCGAGCTTACGACGAGGCAGCACGGCTGATGTGCGGTCCAAAGGCACGAACCAACTTCCAATATAATCCGAACGACCAACAGTCGTCGTCGTCTTCTTCCTCCTCTTCGTCCAAGCTTCTCCCCGCCGCGCTGATAGCGAAATTACATAAATGCCATTTGGCCTCACTCCAAATTGCGAAAAAACACGTCCACAGACAACACCCCGGATTCGAGCCCAACTACACCGCCTACGGCGGATCACCTCCACCGAGCATTGCCGGAACCACCACAGGCCCGTGGACGCCGGAAGATACGTGGGTCTACTCCGACGAAGGTCAAATGGAGATGAATAACAATAATAATAATAACAACATTCATCATCAACAATGCCTTCAACCTCTTGAAGATGATCATATTGAACAAATGATACAAGAGCTGCTACATCTCGGACCATTCGAAATTATTACATAA | 582 | 50.69 | MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFQYNPNDQQSSSSSSSSSSKLLPAALIAKLHKCHLASLQIAKKHVHRQHPGFEPNYTAYGGSPPPSIAGTTTGPWTPEDTWVYSDEGQMEMNNNNNNNNIHHQQCLQPLEDDHIEQMIQELLHLGPFEIIT | 193 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 2794654 | 2795447 | - | ClCG09G003240.2 | Cla09g00288 | 279708 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla09g00288 | 193 | ProSiteProfiles | AP2/ERF domain profile. | 7 | 64 | IPR001471 | GO:0003700|GO:0006355 | |
Cla09g00288 | 193 | PANTHER | ETHYLENE RESPONSE FACTOR | 1 | 192 | - | - | |
Cla09g00288 | 193 | MobiDBLite | consensus disorder prediction | 115 | 135 | - | - | |
Cla09g00288 | 193 | PRINTS | Ethylene responsive element binding protein signature | 8 | 19 | IPR001471 | GO:0003700|GO:0006355 | |
Cla09g00288 | 193 | PRINTS | Ethylene responsive element binding protein signature | 30 | 46 | IPR001471 | GO:0003700|GO:0006355 | |
Cla09g00288 | 193 | SUPERFAMILY | DNA-binding domain | 7 | 65 | IPR016177 | GO:0003677 | |
Cla09g00288 | 193 | CDD | AP2 | 6 | 66 | IPR001471 | GO:0003700|GO:0006355 | |
Cla09g00288 | 193 | MobiDBLite | consensus disorder prediction | 61 | 80 | - | - | |
Cla09g00288 | 193 | SMART | rav1_2 | 7 | 70 | IPR001471 | GO:0003700|GO:0006355 | |
Cla09g00288 | 193 | Gene3D | AP2/ERF domain | 6 | 65 | IPR036955 | GO:0003700|GO:0006355 | |
Cla09g00288 | 193 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 1 | 192 | - | - | |
Cla09g00288 | 193 | Pfam | AP2 domain | 7 | 56 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla06g01112 | Cla-Chr6:23898441 | Cla09g00288 | Cla-Chr9:2794654 | 1.03E-31 | dispersed | |
Cla07g00473 | Cla-Chr7:6665718 | Cla09g00288 | Cla-Chr9:2794654 | 2.43E-10 | dispersed | |
Cla07g01182 | Cla-Chr7:28806666 | Cla09g00288 | Cla-Chr9:2794654 | 4.17E-47 | dispersed | |
Cla09g00288 | Cla-Chr9:2794654 | Cla11g00279 | Cla-Chr11:3216107 | 8.12E-32 | dispersed | |
Cla05g01700 | Cla-Chr5:28752470 | Cla09g00288 | Cla-Chr9:2794654 | 3.41E-61 | wgd | |
Cla08g01357 | Cla-Chr8:26394613 | Cla09g00288 | Cla-Chr9:2794654 | 1.92E-51 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61665 | PF00847 | AP2 | 8.20E-12 | CL0081 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla09g00288 | - | - | cmo:103499832 | 309.686 |