Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00296 ATGCCGGTTGACGGTTCTTCAACTGCCGCCTCCACCGTATGCGTCACCGGCGCCGGCGGCTTCATTGCCTCATGGATCGTCAAACTCCTCCTCCAGAAAGGCTATATCGTAAGAGGAACCGTCAGAAATCCAGAGGATCCGAAGAACCGCCATTTGAGAGAACTCGAAGGTGCGGCGGAGCGGCTCAGTTTGCATAAAGCGGATCTTCTCGATTTCGAAAGCCTCAGAGCGGCGATCGACGGCTGCGATGGCGTTTTCCACACTGCGTCGCCTGTGACTGACGATCCGGTCGGTGATTTGCCCTTCGCATTTTCTCTGGGCTGGGCCCCACTTTTGACTATGAGTCATTACTGGGACCCACCACATGCACCATACACATCATACCATCTTATGATTGGTATCAGGAAGATTGACGAGCAAATGGTGGAACCGGCGGTTAACGGAACGAAGAACGTCATAATCGCGGCAGCCGAAGCCAATGTCCGTCGCGTGGTGTTCACTTCCTCGATTGGTGCAGTCTACATGGACCCCAACCGTGGTCCAGACGACATCGTCGACGAGTCCTGTTGGAGCGATCTCGAGTTCTGTAAGAACACAAAGAATTGGTATTGCTATGGAAAAGCTGTGGCGGAGCAAGCCGCATGGGAGGTTGCGAAGGAGAAGGGGGTGGATTTGGTGGTGGTGAATCCAGTGCTGGTGCTAGGGCCATTGTTGCAATCCACCATTAATGCGAGCATAATTCATATACTGAAGTACTTGACTGGATCAGCTAAGACGTATGCCAATTCCGTTCAGGCATACGTACACGTGAAGGATGTGGCTCTAGCTCATATCCTTGTGTACGAGACTCCCTCCGCCGCCGGCCGGTACCTCTGCGCCGAGAGTGTGCTTCACAGAGGGGAGGTTGTTGAGATTCTGGCCAAATTGTTCCCGGAATATCCTGTTCCTACCAAGTGCTCAGATGAAGTGAACTCGAGGAAGAAGGCATACAACTTCTCCAACAAGAAGCTGAAGGACTTGGGATTGGAGTTCACTCCAGCAAAGCAGTGTTTATACGACACCGTTAAGAGCCTACAAGAGAAAGGTCATCTCCCAATTCCCACTTCTACTCAACCAGTTGACTCCATTCGAATTCAATCTTGA 1143 51.88 MPVDGSSTAASTVCVTGAGGFIASWIVKLLLQKGYIVRGTVRNPEDPKNRHLRELEGAAERLSLHKADLLDFESLRAAIDGCDGVFHTASPVTDDPVGDLPFAFSLGWAPLLTMSHYWDPPHAPYTSYHLMIGIRKIDEQMVEPAVNGTKNVIIAAAEANVRRVVFTSSIGAVYMDPNRGPDDIVDESCWSDLEFCKNTKNWYCYGKAVAEQAAWEVAKEKGVDLVVVNPVLVLGPLLQSTINASIIHILKYLTGSAKTYANSVQAYVHVKDVALAHILVYETPSAAGRYLCAESVLHRGEVVEILAKLFPEYPVPTKCSDEVNSRKKAYNFSNKKLKDLGLEFTPAKQCLYDTVKSLQEKGHLPIPTSTQPVDSIRIQS 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2853720 2860142 + ClCG09G003320.1 Cla09g00296 279716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00296 380 Gene3D - 4 103 - -
Cla09g00296 380 Gene3D - 123 379 - -
Cla09g00296 380 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 128 368 - -
Cla09g00296 380 Pfam NAD(P)H-binding 17 230 IPR016040 -
Cla09g00296 380 CDD FR_SDR_e 13 342 - -
Cla09g00296 380 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 8 96 - -
Cla09g00296 380 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 11 359 IPR036291 -
Cla09g00296 380 PANTHER CINNAMOYL-COA REDUCTASE-LIKE PROTEIN 128 368 - -
Cla09g00296 380 PANTHER CINNAMOYL-COA REDUCTASE-LIKE PROTEIN 8 96 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g00296 Cla-Chr9:2853720 Cla10g01237 Cla-Chr10:27115404 0 dispersed
Cla11g01855 Cla-Chr11:32080129 Cla09g00296 Cla-Chr9:2853720 7.87E-85 transposed
Cla10g01234 Cla-Chr10:27099940 Cla09g00296 Cla-Chr9:2853720 3.11E-106 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00296 K09753 - csv:101213412 611.683