Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00303 ATGGGGATATATCTCAGCTCCCCCAAAACAGAAAAGGCCTCAGATGATGGTGAGAATGAAAGACTTCGGTATGGCCTATCCTCTATGCAAGGGTGGCGTGCAACCATGGAAGATGCTACGGTTCATCTGAATCTGAGATTGTCGTTAAGTTTGGGATTGGAACCATTTTCTGAAGACTCTGAAATTGATCTACATTCTACACATTCTAAAAGTTGTGTTACATATGGATCCATTCTCACCCTACTTAAGTTTCAGCATGCAGCCTATCTAGATTTGGACACTTCAACATCTTTCTTTGGTGTTTATGATGGCCATGGAGGTAAAGCAGTTTCAAAGTTCTGTGCCAAGTATCTTCACCGACAGGTGCTCAAGCATGAATCATACATGGCTGGAGATTTGGGAACTTCTCTGCAGAAGGCCTTTCTCAGAATGGATGAGATGATGCGTGGACAAAGAGGATGGAGAGAATTAGCTATTTTAGGAGACAAAATGGACAAGATTTCTGGTATGATAGAAGGATTTATATGGTCGCCCAAGGGTAGTGAAGCTAACAACCAAGTGGATGATTGGCCTCCGGAGGAGGGACCTCACTCTGACTTTCATGGACCAAATGCTGGAAGCACAGCCTGTGTTGCAATCATACGAAATAACCAACTTGTGGTGGCAAATGCTGGTGATTCTCGCTGTGTCATTTCCAGAAAGGGTCAGGCATATAATCTATCCAAAGATCACAAGCCTGATCTTGAGGTTGAGAAGGACAGGATTCTGAAAGCCGGTGGTTTCATCCGAGTTGGTCGTGTCAATGGAAGTCTCAACTTGGCTCGGGCTATAGGAGACATGGAATTTAAGCAGAATAAAAGTATGCCTGCAGAAAAGCAGATTGTAACTGCCAATCCAGATGTGACAACTGTTGAGCTTTGTGAGGACGACGAGTTTCTTGTTATTGCCTGTGATGGGATCTGGGATTGCATGTCCAGCCAACAACTGGTTGACTACATTGGAGATCAACTAAAATCGGAAAGTAAACTCTCAGTCATTTGTGAGAGAGTGTTTGACAGATGCTTGGCACCCACAGCTGGCGGTGAAGGATGTGACAACATGACTATGATCTTGGTTCAGTTTAAGAAACCCTTCAACAACCCAAATGCTGCTTCTACTTCTGCTGAGGAGCTGCCTTCATCGTCCAATCAAACGTTGTCTGGTCTGAATGAAGGCTCTTCGAAGACTTAA 1230 44.23 MGIYLSSPKTEKASDDGENERLRYGLSSMQGWRATMEDATVHLNLRLSLSLGLEPFSEDSEIDLHSTHSKSCVTYGSILTLLKFQHAAYLDLDTSTSFFGVYDGHGGKAVSKFCAKYLHRQVLKHESYMAGDLGTSLQKAFLRMDEMMRGQRGWRELAILGDKMDKISGMIEGFIWSPKGSEANNQVDDWPPEEGPHSDFHGPNAGSTACVAIIRNNQLVVANAGDSRCVISRKGQAYNLSKDHKPDLEVEKDRILKAGGFIRVGRVNGSLNLARAIGDMEFKQNKSMPAEKQIVTANPDVTTVELCEDDEFLVIACDGIWDCMSSQQLVDYIGDQLKSESKLSVICERVFDRCLAPTAGGEGCDNMTMILVQFKKPFNNPNAASTSAEELPSSSNQTLSGLNEGSSKT 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2908885 2913460 - ClCG09G003390.1 Cla09g00303 279723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00303 409 CDD PP2Cc 23 374 IPR001932 -
Cla09g00303 409 SMART PP2C_SIG_2 78 374 IPR001932 -
Cla09g00303 409 SMART PP2C_4 13 372 IPR001932 -
Cla09g00303 409 MobiDBLite consensus disorder prediction 382 409 - -
Cla09g00303 409 ProSiteProfiles PPM-type phosphatase domain profile. 23 374 IPR001932 -
Cla09g00303 409 ProSitePatterns PPM-type phosphatase domain signature. 98 106 IPR000222 GO:0043169
Cla09g00303 409 PANTHER PROTEIN PHOSPHATASE 2C 54 387 IPR015655 GO:0004722|GO:0006470
Cla09g00303 409 PANTHER PROTEIN PHOSPHATASE 2C 1 40 IPR015655 GO:0004722|GO:0006470
Cla09g00303 409 SUPERFAMILY PP2C-like 3 376 IPR036457 -
Cla09g00303 409 PANTHER PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED 54 387 - -
Cla09g00303 409 Pfam Protein phosphatase 2C 91 150 IPR001932 -
Cla09g00303 409 Pfam Protein phosphatase 2C 203 359 IPR001932 -
Cla09g00303 409 Gene3D - 1 375 IPR036457 -
Cla09g00303 409 PANTHER PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED 1 40 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g00303 Cla-Chr9:2908885 Cla09g00444 Cla-Chr9:4222654 5.39E-34 dispersed
Cla05g01670 Cla-Chr5:28375353 Cla09g00303 Cla-Chr9:2908885 3.15E-36 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00303 K17499 - csv:101214132 684.871