Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla09g00311 | ATGATTTGTGACAAGAAAGCGATTATACCTCGCCAATCTTCCTATAACTCTCTGTATTTGAATCCACTTACCGACCTCCGGCACAACCGTAGCTGCAGCGACGGCGGCGGATTCCGGCAAGGTAAAGAAAACTTAATTCCTAATACGAAGGATAAACAGAGAGATGAAAATGCAGTGTTTTGCGACAAAGAAAATGCGATTCCCATTAATGGGTTTTGTGCTAATTCAAAGCAGCAATTTGGGGATTTGAAGTCATTTTCGACTGGAAAGGCTTTGAAGCCTTCGTCGCTTCATCTGTGTATGCAGATGAACGAACCCGATAAGGTTTTTGCCTCTAGATTGTGGGATGCCACTGATTCTGAACATTCAAGTTCTTTGAAGATTTGGGACTTTTCGGATTCGGAAGCTGCTCCAGCTTCCTCATGGTCCACTTTGCCAAACAGGTCATTGTTGTGTAGGCCATTGCCTGTGGATGTGGGGAGATGTACTTGTGTCATTGTGAAGGAAAAATCACCAGATGGGCTGCATGGTGGAGCCTTCTATTCTCTATACACCAATGAAGGGAAGGGGCGGCAGGATCGGAAGTTGGCGGTGGCTCGCCATCGACGACAGAATGGGAGGTCAGAGTATAAAATAGCTCAGAGTACGAGGGGGATATTGTGCAATGCAGATGATAGTTTTGTTGGATCCATGACCACAAACCTTGTTGGTTCAAAATATCATATATGGGATCAGGGGAGCCATCTGAAACCAATCCCGAGCAAGTCAAGATCGCTTCTGGCTGCTGTAACATTCATGCCTACAATAACTACTTGGACAGGCAGCCATAGGAGCATGAAGGCTTTCATCCCCAAGCATCAATCAATGCTGCTAAAAAACACCAATCAGGTGCAACACATAGCAGGGCTGCCAAAGGAGTGGGAGGAAGAAAAGGCCAAAGTCCACCAGCTTGTTTCTAAGGTTCCCCAATACAACAAGATTTCTAAGCAATATGAATTGGACTTTAGAGACAGAGGAAGGGCAGTTTCAGGTCTTATGATCCAAACCTCGGTGAAGAATTTTCAGTTAACTTTAGAGGAAAATGGTAAACAAACAATTCTCCAACTTGGAAGGATTGGGAAGTCTAAGTATGTGATGGATTATAGATATCCATTGACAGGTTATCAAGCATTTTGCATATGTCTGGCTTCCATAGATTCAAAGCTGTGTTGCTCAGTATGA | 1221 | 44.14 | MICDKKAIIPRQSSYNSLYLNPLTDLRHNRSCSDGGGFRQGKENLIPNTKDKQRDENAVFCDKENAIPINGFCANSKQQFGDLKSFSTGKALKPSSLHLCMQMNEPDKVFASRLWDATDSEHSSSLKIWDFSDSEAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGLHGGAFYSLYTNEGKGRQDRKLAVARHRRQNGRSEYKIAQSTRGILCNADDSFVGSMTTNLVGSKYHIWDQGSHLKPIPSKSRSLLAAVTFMPTITTWTGSHRSMKAFIPKHQSMLLKNTNQVQHIAGLPKEWEEEKAKVHQLVSKVPQYNKISKQYELDFRDRGRAVSGLMIQTSVKNFQLTLEENGKQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV | 406 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 3015017 | 3018038 | + | ClCG09G003460.2 | Cla09g00311 | 279731 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla09g00311 | 406 | SUPERFAMILY | Tubby C-terminal domain-like | 139 | 404 | IPR025659 | - | |
Cla09g00311 | 406 | Gene3D | Tubby Protein; Chain A | 144 | 405 | IPR025659 | - | |
Cla09g00311 | 406 | PRINTS | Tubby superfamily signature | 227 | 251 | IPR000007 | - | |
Cla09g00311 | 406 | PRINTS | Tubby superfamily signature | 342 | 358 | IPR000007 | - | |
Cla09g00311 | 406 | PRINTS | Tubby superfamily signature | 362 | 381 | IPR000007 | - | |
Cla09g00311 | 406 | PRINTS | Tubby superfamily signature | 383 | 405 | IPR000007 | - | |
Cla09g00311 | 406 | PANTHER | TUBBY-RELATED | 1 | 404 | - | - | |
Cla09g00311 | 406 | PANTHER | TUBBY-LIKE PROTEIN 8 | 1 | 404 | - | - | |
Cla09g00311 | 406 | MobiDBLite | consensus disorder prediction | 32 | 51 | - | - | |
Cla09g00311 | 406 | Pfam | Tub family | 152 | 400 | IPR000007 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla06g00505 | Cla-Chr6:6119251 | Cla09g00311 | Cla-Chr9:3015017 | 7.94E-13 | dispersed | |
Cla08g00713 | Cla-Chr8:19403833 | Cla09g00311 | Cla-Chr9:3015017 | 6.14E-12 | dispersed | |
Cla09g00311 | Cla-Chr9:3015017 | Cla05g01926 | Cla-Chr5:31115517 | 6.61E-15 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61667 | PF01167 | Tub | 5.50E-45 | CL0395 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla09g00311 | K19600 | - | csv:101216780 | 781.556 |