Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00311 ATGATTTGTGACAAGAAAGCGATTATACCTCGCCAATCTTCCTATAACTCTCTGTATTTGAATCCACTTACCGACCTCCGGCACAACCGTAGCTGCAGCGACGGCGGCGGATTCCGGCAAGGTAAAGAAAACTTAATTCCTAATACGAAGGATAAACAGAGAGATGAAAATGCAGTGTTTTGCGACAAAGAAAATGCGATTCCCATTAATGGGTTTTGTGCTAATTCAAAGCAGCAATTTGGGGATTTGAAGTCATTTTCGACTGGAAAGGCTTTGAAGCCTTCGTCGCTTCATCTGTGTATGCAGATGAACGAACCCGATAAGGTTTTTGCCTCTAGATTGTGGGATGCCACTGATTCTGAACATTCAAGTTCTTTGAAGATTTGGGACTTTTCGGATTCGGAAGCTGCTCCAGCTTCCTCATGGTCCACTTTGCCAAACAGGTCATTGTTGTGTAGGCCATTGCCTGTGGATGTGGGGAGATGTACTTGTGTCATTGTGAAGGAAAAATCACCAGATGGGCTGCATGGTGGAGCCTTCTATTCTCTATACACCAATGAAGGGAAGGGGCGGCAGGATCGGAAGTTGGCGGTGGCTCGCCATCGACGACAGAATGGGAGGTCAGAGTATAAAATAGCTCAGAGTACGAGGGGGATATTGTGCAATGCAGATGATAGTTTTGTTGGATCCATGACCACAAACCTTGTTGGTTCAAAATATCATATATGGGATCAGGGGAGCCATCTGAAACCAATCCCGAGCAAGTCAAGATCGCTTCTGGCTGCTGTAACATTCATGCCTACAATAACTACTTGGACAGGCAGCCATAGGAGCATGAAGGCTTTCATCCCCAAGCATCAATCAATGCTGCTAAAAAACACCAATCAGGTGCAACACATAGCAGGGCTGCCAAAGGAGTGGGAGGAAGAAAAGGCCAAAGTCCACCAGCTTGTTTCTAAGGTTCCCCAATACAACAAGATTTCTAAGCAATATGAATTGGACTTTAGAGACAGAGGAAGGGCAGTTTCAGGTCTTATGATCCAAACCTCGGTGAAGAATTTTCAGTTAACTTTAGAGGAAAATGGTAAACAAACAATTCTCCAACTTGGAAGGATTGGGAAGTCTAAGTATGTGATGGATTATAGATATCCATTGACAGGTTATCAAGCATTTTGCATATGTCTGGCTTCCATAGATTCAAAGCTGTGTTGCTCAGTATGA 1221 44.14 MICDKKAIIPRQSSYNSLYLNPLTDLRHNRSCSDGGGFRQGKENLIPNTKDKQRDENAVFCDKENAIPINGFCANSKQQFGDLKSFSTGKALKPSSLHLCMQMNEPDKVFASRLWDATDSEHSSSLKIWDFSDSEAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGLHGGAFYSLYTNEGKGRQDRKLAVARHRRQNGRSEYKIAQSTRGILCNADDSFVGSMTTNLVGSKYHIWDQGSHLKPIPSKSRSLLAAVTFMPTITTWTGSHRSMKAFIPKHQSMLLKNTNQVQHIAGLPKEWEEEKAKVHQLVSKVPQYNKISKQYELDFRDRGRAVSGLMIQTSVKNFQLTLEENGKQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3015017 3018038 + ClCG09G003460.2 Cla09g00311 279731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00311 406 SUPERFAMILY Tubby C-terminal domain-like 139 404 IPR025659 -
Cla09g00311 406 Gene3D Tubby Protein; Chain A 144 405 IPR025659 -
Cla09g00311 406 PRINTS Tubby superfamily signature 227 251 IPR000007 -
Cla09g00311 406 PRINTS Tubby superfamily signature 342 358 IPR000007 -
Cla09g00311 406 PRINTS Tubby superfamily signature 362 381 IPR000007 -
Cla09g00311 406 PRINTS Tubby superfamily signature 383 405 IPR000007 -
Cla09g00311 406 PANTHER TUBBY-RELATED 1 404 - -
Cla09g00311 406 PANTHER TUBBY-LIKE PROTEIN 8 1 404 - -
Cla09g00311 406 MobiDBLite consensus disorder prediction 32 51 - -
Cla09g00311 406 Pfam Tub family 152 400 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00505 Cla-Chr6:6119251 Cla09g00311 Cla-Chr9:3015017 7.94E-13 dispersed
Cla08g00713 Cla-Chr8:19403833 Cla09g00311 Cla-Chr9:3015017 6.14E-12 dispersed
Cla09g00311 Cla-Chr9:3015017 Cla05g01926 Cla-Chr5:31115517 6.61E-15 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61667 PF01167 Tub 5.50E-45 CL0395 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00311 K19600 - csv:101216780 781.556