Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00312 ATGGCGAAGATCTCACATCCTTCGCACAACAATTCCATTTCCTCCACTGCTAATCCTCATTCTTCTCCAATTCGTCACAGCCAGAAGAAGGTACTGAAGCGCACGCGTAAGTCCGCTCCTCGAGATGCTCCCGCTCAGCGTAGCTCTGTATACCGCGGAGTCACTAGGCGCATTTGTGGGATAAGAATAGCTGGAATGAAGGACAGAATAAGAAAGGAAGACAAGCCGATCCTGATTTTACTGTTCTTTGGTCTGCCTCTGTTTTGCGGTTGCGGTGGTTCATTGATGGAATCTGAACCGAAACGCGCAGTGTATTTAGGAGCGTATGATGATGAAGAAGCAGCGGCTCATGCTTACGATCTTGCAGCGCTCAAGTACTGGGGAACTGAAACTGTTCTCAACTTTCCAATATTAACGTACCGAGCCGAGCTTAAAGAAATGGAAGGTCAATCAAGAGAAGAGTATATTGGATATTTGAGAAGGAAGAGTAGCGGCTTTTCTCGTGGGGTTTCAAAGTACAGAGGTGTAGCAAGGTACCATAGACTCGAACGACTTACCTTACTAAAAACTACTTTCGTGCATCACTGCACCATCATAATGGAAGATGGGAAGCTCGAATTGGCAGAGTGTTTGGCAATAAATACCTTTACCTTGGAACATATGACAAGCCCTTATGCTATTTTCACATTTATTTTCACAGCTACCCAAGAAGAAGCTGCCGCTGCCTACGACAAAGCGGCCATAGAATACCGCGGCCTTAACGCCGTTACAAATTTCGACCTCAGCCGTTACATCAAATGCCTCCGTCCTGGGGAACAGAATATCCCCAACAATAATAACCGTCCGCCAAACCCTAACGCCGGCGAAACTACGTCACAATTGGACCCCAATTCCCTCCTCGGATTCACCTTTCCGTCGCAATGTTCGAGCTCCGGCCAACCTGCCACCGAGCCACTGCCGGAACCTGGCGACGGTGACTCCTCCTCATCGTCCGCGGCGCTGGAGCTCCTACTCAATTCCTCAAAATTTAAAGACATAATAGAAAGAACATCCGCCGCCGAGGCTCCACAGACGCCGCCGGAATCTGACCGGCCGCGCCGCTGTATTCCCGACGACATTCAAACTTACTTCGATTGTACTCAAGATCCCGGCGACATTGCCGAAGGCGACGACAGCATTTTTGGGTACCTAAATTCGTTTTTACCTTCATCAGTTTTTCACTGCGAACTTGATGCTTAA 1239 48.59 MAKISHPSHNNSISSTANPHSSPIRHSQKKVLKRTRKSAPRDAPAQRSSVYRGVTRRICGIRIAGMKDRIRKEDKPILILLFFGLPLFCGCGGSLMESEPKRAVYLGAYDDEEAAAHAYDLAALKYWGTETVLNFPILTYRAELKEMEGQSREEYIGYLRRKSSGFSRGVSKYRGVARYHRLERLTLLKTTFVHHCTIIMEDGKLELAECLAINTFTLEHMTSPYAIFTFIFTATQEEAAAAYDKAAIEYRGLNAVTNFDLSRYIKCLRPGEQNIPNNNNRPPNPNAGETTSQLDPNSLLGFTFPSQCSSSGQPATEPLPEPGDGDSSSSSAALELLLNSSKFKDIIERTSAAEAPQTPPESDRPRRCIPDDIQTYFDCTQDPGDIAEGDDSIFGYLNSFLPSSVFHCELDA 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3021600 3027980 - ClCG09G003470.1 Cla09g00312 279732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00312 412 SMART rav1_2 172 266 IPR001471 GO:0003700|GO:0006355
Cla09g00312 412 SMART rav1_2 50 142 IPR001471 GO:0003700|GO:0006355
Cla09g00312 412 MobiDBLite consensus disorder prediction 1 25 - -
Cla09g00312 412 MobiDBLite consensus disorder prediction 271 330 - -
Cla09g00312 412 MobiDBLite consensus disorder prediction 272 316 - -
Cla09g00312 412 SUPERFAMILY DNA-binding domain 235 262 IPR016177 GO:0003677
Cla09g00312 412 MobiDBLite consensus disorder prediction 1 50 - -
Cla09g00312 412 SUPERFAMILY DNA-binding domain 100 137 IPR016177 GO:0003677
Cla09g00312 412 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 62 - -
Cla09g00312 412 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 97 181 - -
Cla09g00312 412 ProSiteProfiles AP2/ERF domain profile. 50 136 IPR001471 GO:0003700|GO:0006355
Cla09g00312 412 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 234 395 - -
Cla09g00312 412 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 1 62 - -
Cla09g00312 412 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 234 395 - -
Cla09g00312 412 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 97 181 - -
Cla09g00312 412 Gene3D AP2/ERF domain 50 138 IPR036955 GO:0003700|GO:0006355
Cla09g00312 412 Gene3D AP2/ERF domain 228 262 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g00312 Cla-Chr9:3021600 Cla06g01263 Cla-Chr6:25861007 5.57E-85 dispersed
Cla09g00312 Cla-Chr9:3021600 Cla08g01641 Cla-Chr8:29034235 1.08E-42 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00312 K09285 - csv:101206499 452.21