Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla09g00312 | ATGGCGAAGATCTCACATCCTTCGCACAACAATTCCATTTCCTCCACTGCTAATCCTCATTCTTCTCCAATTCGTCACAGCCAGAAGAAGGTACTGAAGCGCACGCGTAAGTCCGCTCCTCGAGATGCTCCCGCTCAGCGTAGCTCTGTATACCGCGGAGTCACTAGGCGCATTTGTGGGATAAGAATAGCTGGAATGAAGGACAGAATAAGAAAGGAAGACAAGCCGATCCTGATTTTACTGTTCTTTGGTCTGCCTCTGTTTTGCGGTTGCGGTGGTTCATTGATGGAATCTGAACCGAAACGCGCAGTGTATTTAGGAGCGTATGATGATGAAGAAGCAGCGGCTCATGCTTACGATCTTGCAGCGCTCAAGTACTGGGGAACTGAAACTGTTCTCAACTTTCCAATATTAACGTACCGAGCCGAGCTTAAAGAAATGGAAGGTCAATCAAGAGAAGAGTATATTGGATATTTGAGAAGGAAGAGTAGCGGCTTTTCTCGTGGGGTTTCAAAGTACAGAGGTGTAGCAAGGTACCATAGACTCGAACGACTTACCTTACTAAAAACTACTTTCGTGCATCACTGCACCATCATAATGGAAGATGGGAAGCTCGAATTGGCAGAGTGTTTGGCAATAAATACCTTTACCTTGGAACATATGACAAGCCCTTATGCTATTTTCACATTTATTTTCACAGCTACCCAAGAAGAAGCTGCCGCTGCCTACGACAAAGCGGCCATAGAATACCGCGGCCTTAACGCCGTTACAAATTTCGACCTCAGCCGTTACATCAAATGCCTCCGTCCTGGGGAACAGAATATCCCCAACAATAATAACCGTCCGCCAAACCCTAACGCCGGCGAAACTACGTCACAATTGGACCCCAATTCCCTCCTCGGATTCACCTTTCCGTCGCAATGTTCGAGCTCCGGCCAACCTGCCACCGAGCCACTGCCGGAACCTGGCGACGGTGACTCCTCCTCATCGTCCGCGGCGCTGGAGCTCCTACTCAATTCCTCAAAATTTAAAGACATAATAGAAAGAACATCCGCCGCCGAGGCTCCACAGACGCCGCCGGAATCTGACCGGCCGCGCCGCTGTATTCCCGACGACATTCAAACTTACTTCGATTGTACTCAAGATCCCGGCGACATTGCCGAAGGCGACGACAGCATTTTTGGGTACCTAAATTCGTTTTTACCTTCATCAGTTTTTCACTGCGAACTTGATGCTTAA | 1239 | 48.59 | MAKISHPSHNNSISSTANPHSSPIRHSQKKVLKRTRKSAPRDAPAQRSSVYRGVTRRICGIRIAGMKDRIRKEDKPILILLFFGLPLFCGCGGSLMESEPKRAVYLGAYDDEEAAAHAYDLAALKYWGTETVLNFPILTYRAELKEMEGQSREEYIGYLRRKSSGFSRGVSKYRGVARYHRLERLTLLKTTFVHHCTIIMEDGKLELAECLAINTFTLEHMTSPYAIFTFIFTATQEEAAAAYDKAAIEYRGLNAVTNFDLSRYIKCLRPGEQNIPNNNNRPPNPNAGETTSQLDPNSLLGFTFPSQCSSSGQPATEPLPEPGDGDSSSSSAALELLLNSSKFKDIIERTSAAEAPQTPPESDRPRRCIPDDIQTYFDCTQDPGDIAEGDDSIFGYLNSFLPSSVFHCELDA | 412 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 3021600 | 3027980 | - | ClCG09G003470.1 | Cla09g00312 | 279732 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla09g00312 | 412 | SMART | rav1_2 | 172 | 266 | IPR001471 | GO:0003700|GO:0006355 | |
Cla09g00312 | 412 | SMART | rav1_2 | 50 | 142 | IPR001471 | GO:0003700|GO:0006355 | |
Cla09g00312 | 412 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Cla09g00312 | 412 | MobiDBLite | consensus disorder prediction | 271 | 330 | - | - | |
Cla09g00312 | 412 | MobiDBLite | consensus disorder prediction | 272 | 316 | - | - | |
Cla09g00312 | 412 | SUPERFAMILY | DNA-binding domain | 235 | 262 | IPR016177 | GO:0003677 | |
Cla09g00312 | 412 | MobiDBLite | consensus disorder prediction | 1 | 50 | - | - | |
Cla09g00312 | 412 | SUPERFAMILY | DNA-binding domain | 100 | 137 | IPR016177 | GO:0003677 | |
Cla09g00312 | 412 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 1 | 62 | - | - | |
Cla09g00312 | 412 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 97 | 181 | - | - | |
Cla09g00312 | 412 | ProSiteProfiles | AP2/ERF domain profile. | 50 | 136 | IPR001471 | GO:0003700|GO:0006355 | |
Cla09g00312 | 412 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 234 | 395 | - | - | |
Cla09g00312 | 412 | PANTHER | AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR | 1 | 62 | - | - | |
Cla09g00312 | 412 | PANTHER | AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR | 234 | 395 | - | - | |
Cla09g00312 | 412 | PANTHER | AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR | 97 | 181 | - | - | |
Cla09g00312 | 412 | Gene3D | AP2/ERF domain | 50 | 138 | IPR036955 | GO:0003700|GO:0006355 | |
Cla09g00312 | 412 | Gene3D | AP2/ERF domain | 228 | 262 | IPR036955 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla09g00312 | Cla-Chr9:3021600 | Cla06g01263 | Cla-Chr6:25861007 | 5.57E-85 | dispersed | |
Cla09g00312 | Cla-Chr9:3021600 | Cla08g01641 | Cla-Chr8:29034235 | 1.08E-42 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla09g00312 | K09285 | - | csv:101206499 | 452.21 |