Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00322 ATGAGAGATGATAGAATGGCCACCTCCTCGATTGGTGGTCTCATTCATCAACCTTTAGTGACCAATTTCTCAATTAATTCCAACTTCCTCAACTTCTTTGTTTTGACCCTGCTTCTGGTTTTGCAATTCATTCCTCCTTTCTCTGTTTCAGCATCTTGCAACCCATCTGATCGCGATTCTCTCTGGTATTTCGTCAATTCTTCATCTGCTTCACCGGCGGCTTTCAATTGGTCTTCTTCGATTGATTGTTGTTCCTGGGAAGGAGTCTTTTGTGAAGCAATCGCAAATAGCAACGACAATCGAGTTACCCAGCTTTTGTTGCCCTCCAGAGGTCTTCGTGGGGAACTCCCTTCATCTCTCACAAACCTTACCTTTCTCTCTAGCCTTGATCTCTCCCACAATCGTTTTAATGGCTCTCTCCCTTCTGATTTCTTTACGTCCCTAAGTAATCTCAAGGACCTGAATTTGAGCTACAACCTTCTCACCGGCCAGTTGCCTCCACCGCCGACTTCATCGTCCGGACTCTTGATTGAGAATCTGGATTTGTCCAGCAATCGATTCCATGGGGAAATACCTGCATCGTTTATCCAGCAAGTGGCAAGTTCGGGGAGTTTGACCAGTTTCAATGTCAGCAACAATAGTTTTTCAGGTCTCATTCCATCCTCCCTTTGTGTTAATACATCCATAAGCTCCCTAAGGTTATTAGACTTTTCCAATAATGGATTCGACGGTAGAATACCTCAGGGGCTAGGGAACTGCCCCAATTTGGAGGTTTTTCGAGCGAGTTTCAATGGTCTCACTGGTTCTATTCCGTTCGACCTTTATAATGCTATCGCTCTAAAGGAGCTTTCTTTACATGTTAATCATCTTTCGGGGAACATCGGCGAGGGAATCGTTAATCTAACCAACCTCAGAATCCTGGAATTGTACTCCAATTCTCTGATTGGCCCCATCCCAACGGATATTGGAAAGCTCTCCAAATTGGAACAGATATCGCTTCACATTAACAATCTCACAGGCACTCTGCCCAAATCACTGATGAATTGCACTAATCTTACTTTGTTGAATTTGCGGGTCAATAAGCTGCAAGGAGATCTCTCTAATGTTGATTTCTCTCGCCTCCTTGGCCTCACCACACTTGACCTCGGCAACAATATGTTCACAGGTAGTATACCATCGACTCTTTACTCCTGCAGATCTCTAAAGGCAGTTAGACTGGCTAGTAATCAGTTGTCTGGAGAGATCTCTAACGAAATTGCAGCGCTTCAATCACTGTCCTTCATCTCAGTTTCCAAGAATAATCTAACCAATTTAAGTGGAGCACTAAGGAGTTTGATGGGTTGCAGAAACCTTGGAACTCTTGTCCTGTCCGGTAGTTATATTGGTGAAGCATTGCCGGATGAAGATATGATTGTAGATGCTAACACATTCCAACATATCCAGGCTTTGGCTATTGGAGCTAGTCAGTTAACTGGTAAAGTACCCTCCTGGATACAAAAGCTGAGGAGTCTAGAGGTCTTGGACCTGTCTTTTAATCGCCTTATGGGTTCAATACCTGCATGGTTAGGTGATTTTCCGAGTCTGTTTTATATTGACTTGTCTAATAACAGAATTTCCGGAGAATTCCCCACCCAGCTTTGCAGACTGCAGGCTTTGATGTCGCAGCAGATTCTAGATCCTGCCAAGCAGAGTTTTCTTGCGTTGCCTGTCTTTGTTGCGCCCAGTAATGCTACCAATCAGCAATACAATCAGCTCTCCAGCCTTCCGCCAGCTATATACCTTGGCAACAACACCATAAGTGGCCCTATTCCTTTGGAAATCGGGCAATTGAAGTTTATACATATATTAGACCTGAGCAACAACAGCTTCTCCGGCAGCATACCAGACACGATTTCCAATCTCAGTAACTTGGAGAGATTAGACCTCTCTCATAACCACCTAACTGGTGAAATCCCCCGTTCACTCAAAGGCCTCCATTTCTTGTCTTGGTTTAGCGTGGCCTTTAACGACCTTCAAGGACCAATACCATCGGGGGGTCAGTTTGATACCTTTCCTAGCTCTAGCTATGAAGGAAACTCAGGGTTGTGTGGTCCTCCTATAGTGCAGCGCTCTTGCTCTAACCAGACTGGAGTAACCCATTCCAACGCTCAAAATAAAAGCTCCAGTAAGAAACTTGCCATAGGATTAGTCGTGGGCACCTGTTTAGGTATTGCTCTCATCATCACCCTGCTAGCGTTATGGATATTATCCAAGAGGAGGATTGATCCAAGAGGGGATACCGACATAATGGATTTGGACATAGTTTCAATTAGTTCTAATTACAATGCTGACAACAACACTAGCATAGTCATTTTGTTTCCAAATAATGCCAACAACATCAAGGAGCTTACCATTTCTGACATATTGAAGGCCACTGATGATTTCAATCAAGAAAACATAATTGGCTGCGGTGGTTTCGGATTGGTTTACAAGGCAACATTAGCAAATGGGACGAGACTTGCTGTGAAGAAACTCTCGGGAGATTTGGGACTGATGGAAAGGGAATTTAAAGCAGAAGTAGAGGCTCTTTCTGCAGCCAAACACAAGAACCTGGTTACGCTTCAAGGTTACTGTGTACATGAGGGCAGTCGGCTACTAATGTATTCATACATGGAAAACGGAAGTTTAGATTACTGGTTGCATGAGAAGGATGACGGTGCATCTCAACTTGATTGGCCTACTCGGTTGAAGATTATACGAGGAGCAAGTTCTGGATTGGCCTACATGCACCAAATATGCGAGCCACATATTGTACACCGTGATATTAAGTCCAGTAACATCCTGCTCGATGAGAAATTTGAAGCTCATGTAGCAGATTTTGGACTTTCTAGATTGATCAATCCTTACCAGACTCATGTTACAACCGAACTTGTTGGCACCTTGGGCTATATTCCTCCAGAGTATGGACAAGCATGGGTTGCCACTTTGAGAGGAGATATGTATAGCTTTGGTGTTGTCGTGCTCGAGTTGCTTACTGGCAAAAGACCTGTAGAGATATCAAAGCCAAAGGCATCACGAGAGTTGGTTGGCTGGGTGCAACAACTGAGAAATGAGGGAAAACAAGATGAAGTCTTTGACCCCATTTTGAGAGGGAAAGGCTTTGAAGAAGAGATGATCCAGGTTCTCGATGTTGCCTGCATGTGTGTCAGTCAGAACCCCTTTAAAAGACCTACCATCAAGGAAGTTGTTGATTGGTTGAAAGATGTGGGGGCAACCAAAGTTCCCCAAAATAAGGATGTGTGA 3282 44.09 MRDDRMATSSIGGLIHQPLVTNFSINSNFLNFFVLTLLLVLQFIPPFSVSASCNPSDRDSLWYFVNSSSASPAAFNWSSSIDCCSWEGVFCEAIANSNDNRVTQLLLPSRGLRGELPSSLTNLTFLSSLDLSHNRFNGSLPSDFFTSLSNLKDLNLSYNLLTGQLPPPPTSSSGLLIENLDLSSNRFHGEIPASFIQQVASSGSLTSFNVSNNSFSGLIPSSLCVNTSISSLRLLDFSNNGFDGRIPQGLGNCPNLEVFRASFNGLTGSIPFDLYNAIALKELSLHVNHLSGNIGEGIVNLTNLRILELYSNSLIGPIPTDIGKLSKLEQISLHINNLTGTLPKSLMNCTNLTLLNLRVNKLQGDLSNVDFSRLLGLTTLDLGNNMFTGSIPSTLYSCRSLKAVRLASNQLSGEISNEIAALQSLSFISVSKNNLTNLSGALRSLMGCRNLGTLVLSGSYIGEALPDEDMIVDANTFQHIQALAIGASQLTGKVPSWIQKLRSLEVLDLSFNRLMGSIPAWLGDFPSLFYIDLSNNRISGEFPTQLCRLQALMSQQILDPAKQSFLALPVFVAPSNATNQQYNQLSSLPPAIYLGNNTISGPIPLEIGQLKFIHILDLSNNSFSGSIPDTISNLSNLERLDLSHNHLTGEIPRSLKGLHFLSWFSVAFNDLQGPIPSGGQFDTFPSSSYEGNSGLCGPPIVQRSCSNQTGVTHSNAQNKSSSKKLAIGLVVGTCLGIALIITLLALWILSKRRIDPRGDTDIMDLDIVSISSNYNADNNTSIVILFPNNANNIKELTISDILKATDDFNQENIIGCGGFGLVYKATLANGTRLAVKKLSGDLGLMEREFKAEVEALSAAKHKNLVTLQGYCVHEGSRLLMYSYMENGSLDYWLHEKDDGASQLDWPTRLKIIRGASSGLAYMHQICEPHIVHRDIKSSNILLDEKFEAHVADFGLSRLINPYQTHVTTELVGTLGYIPPEYGQAWVATLRGDMYSFGVVVLELLTGKRPVEISKPKASRELVGWVQQLRNEGKQDEVFDPILRGKGFEEEMIQVLDVACMCVSQNPFKRPTIKEVVDWLKDVGATKVPQNKDV 1093
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3110777 3114058 + ClCG09G003560.1 Cla09g00322 279742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00322 1093 PRINTS Leucine-rich repeat signature 126 139 - -
Cla09g00322 1093 PRINTS Leucine-rich repeat signature 634 647 - -
Cla09g00322 1093 Pfam Leucine rich repeat 479 538 IPR001611 GO:0005515
Cla09g00322 1093 Pfam Leucine rich repeat 126 187 IPR001611 GO:0005515
Cla09g00322 1093 Pfam Leucine rich repeat 614 671 IPR001611 GO:0005515
Cla09g00322 1093 SMART LRR_typ_2 374 398 IPR003591 -
Cla09g00322 1093 SMART LRR_typ_2 229 253 IPR003591 -
Cla09g00322 1093 SMART LRR_typ_2 123 147 IPR003591 -
Cla09g00322 1093 SMART LRR_typ_2 301 325 IPR003591 -
Cla09g00322 1093 SMART LRR_typ_2 148 174 IPR003591 -
Cla09g00322 1093 SMART LRR_typ_2 501 525 IPR003591 -
Cla09g00322 1093 SMART LRR_typ_2 634 657 IPR003591 -
Cla09g00322 1093 SMART LRR_typ_2 422 444 IPR003591 -
Cla09g00322 1093 Pfam Leucine rich repeat N-terminal domain 55 91 IPR013210 -
Cla09g00322 1093 ProSiteProfiles Protein kinase domain profile. 808 1079 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g00322 1093 SMART LRR_sd22_2 148 182 - -
Cla09g00322 1093 SMART LRR_sd22_2 501 520 - -
Cla09g00322 1093 SMART LRR_sd22_2 301 333 - -
Cla09g00322 1093 SMART LRR_sd22_2 634 660 - -
Cla09g00322 1093 Gene3D Transferase(Phosphotransferase) domain 1 884 1090 - -
Cla09g00322 1093 ProSiteProfiles Leucine-rich repeat profile. 636 659 IPR001611 GO:0005515
Cla09g00322 1093 ProSitePatterns Serine/Threonine protein kinases active-site signature. 930 942 IPR008271 GO:0004672|GO:0006468
Cla09g00322 1093 Gene3D Phosphorylase Kinase; domain 1 769 883 - -
Cla09g00322 1093 SUPERFAMILY RNI-like 128 550 - -
Cla09g00322 1093 Pfam Protein kinase domain 809 1077 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g00322 1093 SMART serkin_6 808 1079 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g00322 1093 ProSitePatterns Protein kinases ATP-binding region signature. 814 837 IPR017441 GO:0005524
Cla09g00322 1093 Gene3D Ribonuclease Inhibitor 49 115 IPR032675 -
Cla09g00322 1093 Gene3D Ribonuclease Inhibitor 438 713 IPR032675 -
Cla09g00322 1093 Gene3D Ribonuclease Inhibitor 116 437 IPR032675 -
Cla09g00322 1093 PANTHER LEUCINE RICH REPEAT KINASE 2 31 1084 - -
Cla09g00322 1093 PANTHER OS06G0692500 PROTEIN 31 1084 - -
Cla09g00322 1093 SUPERFAMILY Protein kinase-like (PK-like) 791 1079 IPR011009 -
Cla09g00322 1093 SUPERFAMILY L domain-like 478 700 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01566 Cla-Chr6:29215387 Cla09g00322 Cla-Chr9:3110777 1.01E-133 dispersed
Cla09g00322 Cla-Chr9:3110777 Cla11g00084 Cla-Chr11:1098058 0 dispersed
Cla09g00322 Cla-Chr9:3110777 Cla05g00374 Cla-Chr5:3422514 1.34E-145 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80789 PF00069 Pkinase 4.10E-42 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00322 - - csv:101217884 1931.76