Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00323 ATGGCTGTTGAATCAAACCAAACTAACGAATTCATTTTCCGTTCAAAGCTTCCCCATATTCACATTCCCAATCATCTCCCACTCCACGAATACGTTTTCCAAAATCTCCCCAAATTTGCCTCACGCCCCTGTTTGATCAACGGCGCCACCGGCGATGTTTACTCCTACAGCGACCTTCACCTAACGGCCCGTCGAGTCGCCGCCGGCCTACACAGCCTCGGAATTAATAAGGGCGACGTCGTCATGAATTTGCTTCCCAACTCCCCGGAGTTCGTCTTCACCTTCCTCGCCGCGTCGTACCGGGGCGCCATCATGACGGCGGCGAACCCTTTTTACACGGCAGTGGAAATTGCAAAACAGGCCAAAGCCGCCAATGCGAAGTTGATCGTGACCATGGCTTGCTTCTACGATCGGGTTAAGGATTTGGCTGAAAATGGTGTGAAAATTGTATGCGTTGATTTTGCTGTCGAGGGTTGTTTGCATTTCTCTGTTTTGAGTGGGGCTGATGAATCTAATGCGCCGCCGGTGGATTTTTCCCCTGACGACGTGGTGGCGCTGCCGTACTCCTCCGGCACCACCGGTTTGCCGAAGGGAGTCATGTTAACTCACAAAGGGCTAATCACAAGCGTGGCTCAACAAATGGACGGCCAAAATCCGAACCTCTATTATCACGGCGACGATGCTATCCTCTGTGTGCTGCCGTTTTTCCACATTTATTCACTCAATTCCATTTTGCTGTGTGGGCTACGCGTCGGTGCTGCGATTGTGATTATGCAGAAATTTGACATCGTTTCTCTCTTGCAATTGATTGAGAAATACAGAATCTCGATCATGCCCATCGTCCCGCCGATCTTTTTGGCCATTGCTAAGTCGCCGGAATTTGAGAAATACGACGTGTCGTCAGTGAGGGTTCTCAAATCCGGTGGAGCTCCACTGGGGAAGGAGCTGGAAGACGCCGTGCGGGAGAAATTTCCGGCGGCGGTTCTCGGACAGGGGTATGGAATGACCGAGGCCGGTCCGGTTCTGAGCATGAGTTTAGCTTTTGCGAAAGAGCCGTTCGAAGTGAAAGCCGGAGCTTGTGGAACTGTGGTCCGAAATGCAGAGATGAAGATTGTCGACCCAGAAACCGGCGCTATGCCGGATGTGGAGGCAGGAGAAGTGCCAGTGGCATTTGTGGTGAAGGCGAACGGTGGCGCTATAACAGAGGAAGAGGTAAAGCAATTCATAACAAAACAAGTGGTGTTCTACAAGAGGCTAAAACGTAATTTAGCTTCAACAATGGCCCTTAAATCAAAGCAAACTAATGAGTTCATTTTCCGTTCAAAGCTTCCCGATATTTACATTCCCAATCATCTTCCACTCCACGATTACGTTTTCCAAAATCTCCCAAAATTCGCCTCACGCCCCTGTTTGATCAACTCCGCCACCGGCGATGTTTACTCCTTCCACGACGTTCACCTAACGGCCCGTCGTGTCGCCGCCGGCTTACACAACCTCGGAATTAAAAAGGGCGATGTCGTCATGAATTTACTTCCCAACTCCCCGGAGTTCGTCTTCACCTTCCTCGCCGCGTCGTACCGAGGCGCCATCATGACGGCGGCGAACCCTTTTTACACGGCCGTGGAAATCGCCAAACAGGTCAAAGCCGCCAATGCGAAATTGATCGTGACGATGGCTTGCTTTTACGATCGGGTTAAGGATTTGGCTGAAAATGGTGTGAAAATTGTATGCGTTGATTTTGCTGTCGAGGGTTGTTTGCATTTCTCTGTGTTGACTGGGGCTGATGAATCTCACTCGCCGCCGGTGGATTTTTCCCCCGAAGACGTGGTGGCGCTGCCGTACTCCTCCGGCACCACCGGTTTGCCGAAGGGTGTTATGTTAACTCATAAAGGGTTAATCACAAGCGTGGCTCAACAAATGGACGGCCAAAATCCAAACCTCTACTATCATCGCGATGACGTCATCCTCTGTGTGCTGCCGTTTTTCCACATCTATTCACTCAATTCCATTTTGCTGTGCGGGCTACGCGCCGGTGCTGCGATTATGATTATGCAGAAATTTGAGATAATTTCACTTTTACAATTGATTGAGAAATACAAAATTTCGATCATGCCCATCGTGCCGCCGATCTTACTGGCCATTGCTAAGTCGTCGGAATTTGAGAAATACGACGTGTCGTCCGTGAGGGTTCTAAAATCCGGCGGAGCGCCACTGGGGAAGGAGTTGGAAGACGCCGTGAGGGCGAAATTTCCGGCGGCGATTCTTGGGCAAGGGTACGGAATGACCGAGGCCGGTCCGGTTCTGACAATGAGTTTGGCTTTTGCGAAAGAGCCGTTTCAAGTGAAAGCCGGAGCATGTGGAACTGTGGTTCGAAATGCAGAGATGAAGATTGTTGACCCGGAAACCGGCGCGTCCTTGCCGGCGAATTCGGCCGGAGAGATTTGTATTAGGGGTGATCAAATCATGAAGGGGTATTTGAATGATTTGGAGTCTACGAAGAGAACAATTGATAAAGAAGGATGGCTTCACACCGGCGACATGGGCTACATCGACGACGACGACGAGCTCTTCATCGTGGACCGGCTTAAGGAACTTATCAAATTCAAGGCATTTCAAGTGGCGCCTGCGGAGGTGGAGGCCCTTCTTATCAGTCATCCTAAACTCTGTGACGCTGCGGTTATTGGGATGCCGGACGTGGAGGCGGGAGAAGTACCGGTGGCATTTGTTGTGAAGGAGAACAGTGACACAATAACGGAAGAAGAGGTAAAGCAATTCATAACAAAACAAGTGGTATTCTACAAGAGGCTAAAACGTGTGTTTTTTGTCAACGCTATTCCGAAGGCGCCATCTGGCAAAATCCTTAGAAAAGAACTAAGGGCAAAATTTGCTTCTGCTGCTTACAATTAA 2907 50.05 MAVESNQTNEFIFRSKLPHIHIPNHLPLHEYVFQNLPKFASRPCLINGATGDVYSYSDLHLTARRVAAGLHSLGINKGDVVMNLLPNSPEFVFTFLAASYRGAIMTAANPFYTAVEIAKQAKAANAKLIVTMACFYDRVKDLAENGVKIVCVDFAVEGCLHFSVLSGADESNAPPVDFSPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQMDGQNPNLYYHGDDAILCVLPFFHIYSLNSILLCGLRVGAAIVIMQKFDIVSLLQLIEKYRISIMPIVPPIFLAIAKSPEFEKYDVSSVRVLKSGGAPLGKELEDAVREKFPAAVLGQGYGMTEAGPVLSMSLAFAKEPFEVKAGACGTVVRNAEMKIVDPETGAMPDVEAGEVPVAFVVKANGGAITEEEVKQFITKQVVFYKRLKRNLASTMALKSKQTNEFIFRSKLPDIYIPNHLPLHDYVFQNLPKFASRPCLINSATGDVYSFHDVHLTARRVAAGLHNLGIKKGDVVMNLLPNSPEFVFTFLAASYRGAIMTAANPFYTAVEIAKQVKAANAKLIVTMACFYDRVKDLAENGVKIVCVDFAVEGCLHFSVLTGADESHSPPVDFSPEDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQMDGQNPNLYYHRDDVILCVLPFFHIYSLNSILLCGLRAGAAIMIMQKFEIISLLQLIEKYKISIMPIVPPILLAIAKSSEFEKYDVSSVRVLKSGGAPLGKELEDAVRAKFPAAILGQGYGMTEAGPVLTMSLAFAKEPFQVKAGACGTVVRNAEMKIVDPETGASLPANSAGEICIRGDQIMKGYLNDLESTKRTIDKEGWLHTGDMGYIDDDDELFIVDRLKELIKFKAFQVAPAEVEALLISHPKLCDAAVIGMPDVEAGEVPVAFVVKENSDTITEEEVKQFITKQVVFYKRLKRVFFVNAIPKAPSGKILRKELRAKFASAAYN 968
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 3124225 3142385 + ClCG09G003580.1 Cla09g00323 279743
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00323 968 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 379 427 - -
Cla09g00323 968 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 432 963 - -
Cla09g00323 968 CDD 4CL 448 958 - -
Cla09g00323 968 Gene3D - 863 965 IPR045851 -
Cla09g00323 968 SUPERFAMILY Acetyl-CoA synthetase-like 15 421 - -
Cla09g00323 968 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 378 - -
Cla09g00323 968 PANTHER 4-COUMARATE--COA LIGASE 2-LIKE 7 378 - -
Cla09g00323 968 Gene3D - 431 862 IPR042099 -
Cla09g00323 968 Gene3D - 5 395 IPR042099 -
Cla09g00323 968 PANTHER 4-COUMARATE--COA LIGASE 2-LIKE 379 427 - -
Cla09g00323 968 PANTHER 4-COUMARATE--COA LIGASE 2-LIKE 432 963 - -
Cla09g00323 968 SUPERFAMILY Acetyl-CoA synthetase-like 436 964 - -
Cla09g00323 968 ProSitePatterns Putative AMP-binding domain signature. 612 623 IPR020845 -
Cla09g00323 968 Pfam AMP-binding enzyme 38 387 IPR000873 -
Cla09g00323 968 Pfam AMP-binding enzyme 464 868 IPR000873 -
Cla09g00323 968 Pfam AMP-binding enzyme C-terminal domain 877 952 IPR025110 -
Cla09g00323 968 ProSitePatterns Putative AMP-binding domain signature. 186 197 IPR020845 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01321 Cla-Chr6:26576714 Cla09g00323 Cla-Chr9:3124225 1.10E-08 dispersed
Cla09g00323 Cla-Chr9:3124225 Cla11g01229 Cla-Chr11:25623628 2.93E-08 dispersed
Cla01g00275 Cla-Chr1:2893647 Cla09g00323 Cla-Chr9:3124225 4.14E-17 transposed
Cla01g00434 Cla-Chr1:4693647 Cla09g00323 Cla-Chr9:3124225 3.49E-17 transposed
Cla01g02457 Cla-Chr1:38267201 Cla09g00323 Cla-Chr9:3124225 5.18E-15 transposed
Cla03g00266 Cla-Chr3:3170022 Cla09g00323 Cla-Chr9:3124225 7.78E-08 transposed
Cla03g00341 Cla-Chr3:3971460 Cla09g00323 Cla-Chr9:3124225 9.32E-29 transposed
Cla05g01306 Cla-Chr5:15838351 Cla09g00323 Cla-Chr9:3124225 1.79E-22 transposed
Cla05g01577 Cla-Chr5:26748390 Cla09g00323 Cla-Chr9:3124225 1.47E-06 transposed
Cla05g02181 Cla-Chr5:33407210 Cla09g00323 Cla-Chr9:3124225 2.26E-47 transposed
Cla06g00795 Cla-Chr6:10949308 Cla09g00323 Cla-Chr9:3124225 3.72E-14 transposed
Cla10g01908 Cla-Chr10:34963679 Cla09g00323 Cla-Chr9:3124225 7.29E-08 transposed
Cla11g01330 Cla-Chr11:26773143 Cla09g00323 Cla-Chr9:3124225 8.25E-53 transposed
Cla02g00741 Cla-Chr2:9012530 Cla09g00323 Cla-Chr9:3124225 2.01E-08 transposed
Cla10g01217 Cla-Chr10:26812380 Cla09g00323 Cla-Chr9:3124225 1.12E-09 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00323 K01904 - csv:101218361 983.015