Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla09g00323 | ATGGCTGTTGAATCAAACCAAACTAACGAATTCATTTTCCGTTCAAAGCTTCCCCATATTCACATTCCCAATCATCTCCCACTCCACGAATACGTTTTCCAAAATCTCCCCAAATTTGCCTCACGCCCCTGTTTGATCAACGGCGCCACCGGCGATGTTTACTCCTACAGCGACCTTCACCTAACGGCCCGTCGAGTCGCCGCCGGCCTACACAGCCTCGGAATTAATAAGGGCGACGTCGTCATGAATTTGCTTCCCAACTCCCCGGAGTTCGTCTTCACCTTCCTCGCCGCGTCGTACCGGGGCGCCATCATGACGGCGGCGAACCCTTTTTACACGGCAGTGGAAATTGCAAAACAGGCCAAAGCCGCCAATGCGAAGTTGATCGTGACCATGGCTTGCTTCTACGATCGGGTTAAGGATTTGGCTGAAAATGGTGTGAAAATTGTATGCGTTGATTTTGCTGTCGAGGGTTGTTTGCATTTCTCTGTTTTGAGTGGGGCTGATGAATCTAATGCGCCGCCGGTGGATTTTTCCCCTGACGACGTGGTGGCGCTGCCGTACTCCTCCGGCACCACCGGTTTGCCGAAGGGAGTCATGTTAACTCACAAAGGGCTAATCACAAGCGTGGCTCAACAAATGGACGGCCAAAATCCGAACCTCTATTATCACGGCGACGATGCTATCCTCTGTGTGCTGCCGTTTTTCCACATTTATTCACTCAATTCCATTTTGCTGTGTGGGCTACGCGTCGGTGCTGCGATTGTGATTATGCAGAAATTTGACATCGTTTCTCTCTTGCAATTGATTGAGAAATACAGAATCTCGATCATGCCCATCGTCCCGCCGATCTTTTTGGCCATTGCTAAGTCGCCGGAATTTGAGAAATACGACGTGTCGTCAGTGAGGGTTCTCAAATCCGGTGGAGCTCCACTGGGGAAGGAGCTGGAAGACGCCGTGCGGGAGAAATTTCCGGCGGCGGTTCTCGGACAGGGGTATGGAATGACCGAGGCCGGTCCGGTTCTGAGCATGAGTTTAGCTTTTGCGAAAGAGCCGTTCGAAGTGAAAGCCGGAGCTTGTGGAACTGTGGTCCGAAATGCAGAGATGAAGATTGTCGACCCAGAAACCGGCGCTATGCCGGATGTGGAGGCAGGAGAAGTGCCAGTGGCATTTGTGGTGAAGGCGAACGGTGGCGCTATAACAGAGGAAGAGGTAAAGCAATTCATAACAAAACAAGTGGTGTTCTACAAGAGGCTAAAACGTAATTTAGCTTCAACAATGGCCCTTAAATCAAAGCAAACTAATGAGTTCATTTTCCGTTCAAAGCTTCCCGATATTTACATTCCCAATCATCTTCCACTCCACGATTACGTTTTCCAAAATCTCCCAAAATTCGCCTCACGCCCCTGTTTGATCAACTCCGCCACCGGCGATGTTTACTCCTTCCACGACGTTCACCTAACGGCCCGTCGTGTCGCCGCCGGCTTACACAACCTCGGAATTAAAAAGGGCGATGTCGTCATGAATTTACTTCCCAACTCCCCGGAGTTCGTCTTCACCTTCCTCGCCGCGTCGTACCGAGGCGCCATCATGACGGCGGCGAACCCTTTTTACACGGCCGTGGAAATCGCCAAACAGGTCAAAGCCGCCAATGCGAAATTGATCGTGACGATGGCTTGCTTTTACGATCGGGTTAAGGATTTGGCTGAAAATGGTGTGAAAATTGTATGCGTTGATTTTGCTGTCGAGGGTTGTTTGCATTTCTCTGTGTTGACTGGGGCTGATGAATCTCACTCGCCGCCGGTGGATTTTTCCCCCGAAGACGTGGTGGCGCTGCCGTACTCCTCCGGCACCACCGGTTTGCCGAAGGGTGTTATGTTAACTCATAAAGGGTTAATCACAAGCGTGGCTCAACAAATGGACGGCCAAAATCCAAACCTCTACTATCATCGCGATGACGTCATCCTCTGTGTGCTGCCGTTTTTCCACATCTATTCACTCAATTCCATTTTGCTGTGCGGGCTACGCGCCGGTGCTGCGATTATGATTATGCAGAAATTTGAGATAATTTCACTTTTACAATTGATTGAGAAATACAAAATTTCGATCATGCCCATCGTGCCGCCGATCTTACTGGCCATTGCTAAGTCGTCGGAATTTGAGAAATACGACGTGTCGTCCGTGAGGGTTCTAAAATCCGGCGGAGCGCCACTGGGGAAGGAGTTGGAAGACGCCGTGAGGGCGAAATTTCCGGCGGCGATTCTTGGGCAAGGGTACGGAATGACCGAGGCCGGTCCGGTTCTGACAATGAGTTTGGCTTTTGCGAAAGAGCCGTTTCAAGTGAAAGCCGGAGCATGTGGAACTGTGGTTCGAAATGCAGAGATGAAGATTGTTGACCCGGAAACCGGCGCGTCCTTGCCGGCGAATTCGGCCGGAGAGATTTGTATTAGGGGTGATCAAATCATGAAGGGGTATTTGAATGATTTGGAGTCTACGAAGAGAACAATTGATAAAGAAGGATGGCTTCACACCGGCGACATGGGCTACATCGACGACGACGACGAGCTCTTCATCGTGGACCGGCTTAAGGAACTTATCAAATTCAAGGCATTTCAAGTGGCGCCTGCGGAGGTGGAGGCCCTTCTTATCAGTCATCCTAAACTCTGTGACGCTGCGGTTATTGGGATGCCGGACGTGGAGGCGGGAGAAGTACCGGTGGCATTTGTTGTGAAGGAGAACAGTGACACAATAACGGAAGAAGAGGTAAAGCAATTCATAACAAAACAAGTGGTATTCTACAAGAGGCTAAAACGTGTGTTTTTTGTCAACGCTATTCCGAAGGCGCCATCTGGCAAAATCCTTAGAAAAGAACTAAGGGCAAAATTTGCTTCTGCTGCTTACAATTAA | 2907 | 50.05 | MAVESNQTNEFIFRSKLPHIHIPNHLPLHEYVFQNLPKFASRPCLINGATGDVYSYSDLHLTARRVAAGLHSLGINKGDVVMNLLPNSPEFVFTFLAASYRGAIMTAANPFYTAVEIAKQAKAANAKLIVTMACFYDRVKDLAENGVKIVCVDFAVEGCLHFSVLSGADESNAPPVDFSPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQMDGQNPNLYYHGDDAILCVLPFFHIYSLNSILLCGLRVGAAIVIMQKFDIVSLLQLIEKYRISIMPIVPPIFLAIAKSPEFEKYDVSSVRVLKSGGAPLGKELEDAVREKFPAAVLGQGYGMTEAGPVLSMSLAFAKEPFEVKAGACGTVVRNAEMKIVDPETGAMPDVEAGEVPVAFVVKANGGAITEEEVKQFITKQVVFYKRLKRNLASTMALKSKQTNEFIFRSKLPDIYIPNHLPLHDYVFQNLPKFASRPCLINSATGDVYSFHDVHLTARRVAAGLHNLGIKKGDVVMNLLPNSPEFVFTFLAASYRGAIMTAANPFYTAVEIAKQVKAANAKLIVTMACFYDRVKDLAENGVKIVCVDFAVEGCLHFSVLTGADESHSPPVDFSPEDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQMDGQNPNLYYHRDDVILCVLPFFHIYSLNSILLCGLRAGAAIMIMQKFEIISLLQLIEKYKISIMPIVPPILLAIAKSSEFEKYDVSSVRVLKSGGAPLGKELEDAVRAKFPAAILGQGYGMTEAGPVLTMSLAFAKEPFQVKAGACGTVVRNAEMKIVDPETGASLPANSAGEICIRGDQIMKGYLNDLESTKRTIDKEGWLHTGDMGYIDDDDELFIVDRLKELIKFKAFQVAPAEVEALLISHPKLCDAAVIGMPDVEAGEVPVAFVVKENSDTITEEEVKQFITKQVVFYKRLKRVFFVNAIPKAPSGKILRKELRAKFASAAYN | 968 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 3124225 | 3142385 | + | ClCG09G003580.1 | Cla09g00323 | 279743 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla09g00323 | 968 | PANTHER | LONG-CHAIN-FATTY-ACID--COA LIGASE | 379 | 427 | - | - | |
| Cla09g00323 | 968 | PANTHER | LONG-CHAIN-FATTY-ACID--COA LIGASE | 432 | 963 | - | - | |
| Cla09g00323 | 968 | CDD | 4CL | 448 | 958 | - | - | |
| Cla09g00323 | 968 | Gene3D | - | 863 | 965 | IPR045851 | - | |
| Cla09g00323 | 968 | SUPERFAMILY | Acetyl-CoA synthetase-like | 15 | 421 | - | - | |
| Cla09g00323 | 968 | PANTHER | LONG-CHAIN-FATTY-ACID--COA LIGASE | 7 | 378 | - | - | |
| Cla09g00323 | 968 | PANTHER | 4-COUMARATE--COA LIGASE 2-LIKE | 7 | 378 | - | - | |
| Cla09g00323 | 968 | Gene3D | - | 431 | 862 | IPR042099 | - | |
| Cla09g00323 | 968 | Gene3D | - | 5 | 395 | IPR042099 | - | |
| Cla09g00323 | 968 | PANTHER | 4-COUMARATE--COA LIGASE 2-LIKE | 379 | 427 | - | - | |
| Cla09g00323 | 968 | PANTHER | 4-COUMARATE--COA LIGASE 2-LIKE | 432 | 963 | - | - | |
| Cla09g00323 | 968 | SUPERFAMILY | Acetyl-CoA synthetase-like | 436 | 964 | - | - | |
| Cla09g00323 | 968 | ProSitePatterns | Putative AMP-binding domain signature. | 612 | 623 | IPR020845 | - | |
| Cla09g00323 | 968 | Pfam | AMP-binding enzyme | 38 | 387 | IPR000873 | - | |
| Cla09g00323 | 968 | Pfam | AMP-binding enzyme | 464 | 868 | IPR000873 | - | |
| Cla09g00323 | 968 | Pfam | AMP-binding enzyme C-terminal domain | 877 | 952 | IPR025110 | - | |
| Cla09g00323 | 968 | ProSitePatterns | Putative AMP-binding domain signature. | 186 | 197 | IPR020845 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla06g01321 | Cla-Chr6:26576714 | Cla09g00323 | Cla-Chr9:3124225 | 1.10E-08 | dispersed | |
| Cla09g00323 | Cla-Chr9:3124225 | Cla11g01229 | Cla-Chr11:25623628 | 2.93E-08 | dispersed | |
| Cla01g00275 | Cla-Chr1:2893647 | Cla09g00323 | Cla-Chr9:3124225 | 4.14E-17 | transposed | |
| Cla01g00434 | Cla-Chr1:4693647 | Cla09g00323 | Cla-Chr9:3124225 | 3.49E-17 | transposed | |
| Cla01g02457 | Cla-Chr1:38267201 | Cla09g00323 | Cla-Chr9:3124225 | 5.18E-15 | transposed | |
| Cla03g00266 | Cla-Chr3:3170022 | Cla09g00323 | Cla-Chr9:3124225 | 7.78E-08 | transposed | |
| Cla03g00341 | Cla-Chr3:3971460 | Cla09g00323 | Cla-Chr9:3124225 | 9.32E-29 | transposed | |
| Cla05g01306 | Cla-Chr5:15838351 | Cla09g00323 | Cla-Chr9:3124225 | 1.79E-22 | transposed | |
| Cla05g01577 | Cla-Chr5:26748390 | Cla09g00323 | Cla-Chr9:3124225 | 1.47E-06 | transposed | |
| Cla05g02181 | Cla-Chr5:33407210 | Cla09g00323 | Cla-Chr9:3124225 | 2.26E-47 | transposed | |
| Cla06g00795 | Cla-Chr6:10949308 | Cla09g00323 | Cla-Chr9:3124225 | 3.72E-14 | transposed | |
| Cla10g01908 | Cla-Chr10:34963679 | Cla09g00323 | Cla-Chr9:3124225 | 7.29E-08 | transposed | |
| Cla11g01330 | Cla-Chr11:26773143 | Cla09g00323 | Cla-Chr9:3124225 | 8.25E-53 | transposed | |
| Cla02g00741 | Cla-Chr2:9012530 | Cla09g00323 | Cla-Chr9:3124225 | 2.01E-08 | transposed | |
| Cla10g01217 | Cla-Chr10:26812380 | Cla09g00323 | Cla-Chr9:3124225 | 1.12E-09 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla09g00323 | K01904 | - | csv:101218361 | 983.015 |