Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00324 ATGGGGACTCCGGTGAATATAATTGTCGGATCACATGTTTGGGTTGAGGATCCTGAGGATGCTTGGATTGAAGGGCAAGTTACAGAAATTAATGGCAAAAATGCTACTATACTCACTACCAATGAAAAAACTATTGTTGCAGAAATTTCGAGTATATATCCGAAAGACACGGAGGCGCCGCCGGCGGGGGTTGACGACATGACGAAATTGGCGTATCTTCATGAACCGGGAGTTCTGCATAACCTAGCTTGTCGATTTTCTCTCAATGAAATATACACATACACCGGGAATATTCTAATTGCGGTGAATCCTTTCCGGCGACTGCCCCATTTGTATGACATTCACATGATGGAACAATATAAAGGAGCTCCTTTCGGCGAACTTAGTCCACATCTTTTCGCTGTTGCAGATGCTTGCTATAGATCGATGATTAACGAGCAAGGAAGTCAGTCCATATTAGTGAGTGGAGAGAGTGGTGCTGGTAAAACTGAGACAACAAAGATGCTCATGAGATATCTTGCATTCATGGGAGGCAGGTCAGATACTGAAGGAAGAACAGTTGAACAACAGGTTTTGGAGTCCAACCCTGTACTGGAAGCATTTGGAAATGCCAAAACCGTCAAAAACAACAATTCAAGTCGTTTTGGTAAATTTGTAGAAATACAATTTGATAAGAATTGGAAGATCTCTGGGGCTGCCATTCGTACATACCTTCTCGAACGGTCACGTGTTTGCCAAGTCTCAGACCCTGAGAGAAACTACCATTGTTTTTACATGCTCTGTGCAGCACCACCAGAAGATGTCAAGAAATTCAAGTTAGGAGACCCGAGGACATTTCATTATCTTAATCAAACGAATTGTTATGAAGTGGCGAATGTTGATGATGCAAGAGAGTACTTAGAGACGAGAAATGCCATGGATGTTGTCGGAATCAGCCAGGAGGAACAGGATGCTATATTTCGTGTTGTAGCTTCAATACTGCATCTTGGAAACATCAACTTCATGAAAGGGAAGGAAGTTGACTCTTCCAAAGTGAAAGACGAGAAGTCTAATTATCATCTTCAAACAGCAGCAGAGCTACTCATGTGTGATGTGAAGGCACTGGAACATTCGCTCTGCCAGCGTGTCATAGTGACTCCAGATGGCAACATTACAAAGCCTTTGGACCCAGATTCAGCAGCCTTGAGTCGTGATGCATTGGCAAAAACTGTGTATTCTAGGCTGTTTGATTGGATTGTGGACAAAATTAATAGTTCAATTGGCCAAGATCCTAATGCAGCCAGTTTAATTGGAGTTCTTGATATTTATGGTTTTGAAAGCTTCAAGATCAACAGTTTTGAGCAGCTCTGTATCAACCTGACCAATGAGAAGTTGCAGCAACATTTTAATCAGCATGTTTTCAAGATGGAGCAAGAGGAGTATACGAAGGAAGAAATAAACTGGAGCTATGTTGAGTTTGTAGATAATCAGGATGTCCTTGATCTTATTGAGAAGGTACTGCTACTGACTTTTGGCTCACTCCTTTGTAACATATTGTGCTTGCTGCCACCCACCGTACCTCGAGTAATGAATACATTTTGTGTCTCACAGAAACCTGGAGGTATAATCGCCCTGCTTGATGAAGCCTGTATGTTTCCAAAGTCAACACACGAAACATTTGCTCAAAAGATGTATCAGACGTACAAAGGACATAAGCGGTTCAGCAAGCCAAAACTTGCTCGAACAGACTTCACAATAAACCATTATGCTGGAGATGTTACATACCAAGCAGATCAATTTCTTGATAAAAACAAGGACTATGTAGTAGCAGAACATCAGGCTCTTCTAAATGCCTCACGATGCTCTTTTGTTGCTAATCTTTTCCCTCCACTTCCTGAGGAGAGCTCAAAGCAATCCAAGTTTTCCTCTATTGGTACTCGGTTCAAGCAACAACTACAAGCTCTCATGGAAACATTGAATACTACAGAACCACATTATATTAGATGTGTAAAGCCCAACACAGTTTTGAAACCTGGCATCTTTGAGAACTTCAACGTGTTGAACCAATTGAGGTGTGGGGGAGTGCTCGAGGCAATTAGGATAAGTTGTGCAGGATATCCAACAAAAAGAACATTTGATGAGTTCCTTGATCGTTTTGGAATGCTTGCTCCAGATATTTCGGATGGCTCTGATGAAAAATCAGCATGCATTGCAATATGTGACAGAATGGGCTTAAAAGGTTATCAGATTGGAAAAACAAAAGTGTTCCTCAGAGCTGGACAAATGGCTGAGTTGGATGCACGACGAACTGAAATTTTGGCTAACGCTGTCAGACGCATCCAGCGGCAAATACGAACCCATCTAACTAGGAAAGAGTTTATCGCCCTGAGGAGAGCTACAATTCATATACAGAAACTTTGGAGAGGGAAACTTGCTCGTAAGCTGTATGAGCAAATGAGGAGAGAAGCAGCTTCAATCCGTATACAGAAGCATGCACGTGCTCACGCAGATAGAAAATCTTACAAAAAATTACTTGCATCAGCTATAGTTATTCAGACTGGTATGCGTGCAATGGCAGCTAGAAATGAGTACAGACACAGAAGAAGAACTAAGGCAGCTATCATTGTTCAGACTGAATGGCGGAGGGCATCAGCTATTTCAGCTTACAAACAGCAGCAGAAGGCAACTCTTGCCCTTCAATGCCTCTGGCGATCTAAAGTTGCAAGGAAGGAGCTTAGAAAATTAAAGATGGCTGCAAGAGAAACAGGAGCACTCAAGGAGGCCAAGGACAAATTGGAGAAACGTGTCGAGGAGCTAACATGGCGCCTAGAGTTTGAGAAGCACTTGAGGATGGATGTTGAAGAAGCTAAGGGGCAAGAGGTTGCAAAATTACAAAATGCTTTGGAAGAAATGCAAGGCCAGCTGGATGAAGCCAATGCTGCAATTATACGTGAGAGAGAAGCAGCAAAATTGGCCATAGAACAAGCCCCACCAGTCATTAAGGAAGTACCTGTGGTTGACGAGACCAAGCTAGAAATGCTGAGAAATCATAATGAAGAACTTGAGGGGGAGGTTGGAGAGCTGAAGAAGAAAATTGAGGAATTTGAAGAAAAGTATGCTGAAGTGGAAAGGGAGAGTAAAGCTAGGCTCAAGGAGGCAGAAGAGGCACATTTGAAATCGTTGCAACTTCAAGAGGCTATTGAGAGATTGGAATCAAATTTATCTAGCCTTGAGTCTGAGAACCAGGTTCTGCGCCAGCAGGCTTTGGTTGCAGCAGACAATGAGTCCCTCTCTGAAGAAGTGCAAGCCCTCAAGAGTAAGATTGGAAGTCTAGAGGCAGAGAATGAAGTTCTCCGCAACCGGCCAGTGGCTGTTGAGCATATATCTGTTCCCGCTGGAGTGCTTACAGAAAGCAAGACTTTAGATAACGGACATGTTAAGGAAGAGGAGAATAAATCAACTAAGGAACCATCTACTGTTCCCATCCTAGTTAAACAAGGTTCGCTTACAGAAAAGCAACAGGAAAATCATGATGTCCTGCTCAAGTGCTTAGCAGAAGACAAGCGTTTTGACAAGGGCAGACCAGTTGCAGCCTGTATTGTCTACAAGACACTTCTTCAATGGAGATCTTTTGAAGCAGAGAAAACAAATATATTTGACAGAATTATTCACACAATCAGATCTTCTATAGAGAGTCAAGAAAATATCAGCGATTTTGCATATTGGCTTTCAACCACTTCCACCCTTCTCTATCTTCTTCAAAGTTCACTCAAGGCAACCAATACAAGTACTGTAGCTTCACATCGCAACCGAGCTTCACCTGCAACTTTATTTGGTCGTATGGCATATGGTCTTCGATCATCTTCAGTGGGTATGGGAATTTCCAGTGGATACAGTGGAATGGTGGGCAAGACAAACAATCAGTCTAAAGTTGAAGCCAAGTACCCAGCACTTCTTTTTAAGCAACATCTGGCAGCATGCATTGAAAAATTGTTTGGGATGATACGTGATAATTTGAAGAAAGAAATTAGTCCTTTCTTGCATCTATGTATTCAGGCACCAAGATCAGTGAAGTCCAGATCAATAAGAGGGTCATCTAAAAATATCCATTCAAACATTGTTGCAAAACAACAAGCATCAAGTATTCACTGGCAAAGCATTGTTAATAAGCTAGACCAAACGTTGGATATAATGTCTGAAAACCATGTTCCCTCCATGATCATGAGAAAAATCTTCTTCCAAGTTTTCTCATTCATAAATGTCCAGCTTTTCAATAGCTTGTTACTACGACGTGAGTGTTGTTCCTTCAGTAATGGAGAGTACTTGAAGTTGGGTCTGCAGGAGTTGGAGCAATGGTGTAACAAAGCTACCGATACGTATGCTGGCTCTTCTTGGGATGAACTTCAACACATAAGACAAGCAGTAGGATTTCTGGTGTTACTCCAGAAATCCCAGAAAAGTTTGAATGAGATCACAGATGAATTGTGCCCGATTCTGAGCATTCCGCAAATATATCGCATAGGCACGATGTTCTGGGATGACAAATATGGAACTCAGGGATTATCTCCTGATATAATTGGAAAAATGAGAGTCCTATTGGCAGAAGACTCCATAAACATCCCAAACAACTCTTTCCTGCTTGATGTGGATTCAAGCATACCATTTTCAATGGAAGAAATATTCCGGTCGTTTGGCGAGGATGGCGGGGTTAACCTTTCCGACGTTGACCCGCCACCACTTATAAGACAAAGATCGGATTTCCATTTTCTAGTGCAGCAACTGACTGAATGA 4770 42.14 MGTPVNIIVGSHVWVEDPEDAWIEGQVTEINGKNATILTTNEKTIVAEISSIYPKDTEAPPAGVDDMTKLAYLHEPGVLHNLACRFSLNEIYTYTGNILIAVNPFRRLPHLYDIHMMEQYKGAPFGELSPHLFAVADACYRSMINEQGSQSILVSGESGAGKTETTKMLMRYLAFMGGRSDTEGRTVEQQVLESNPVLEAFGNAKTVKNNNSSRFGKFVEIQFDKNWKISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEDVKKFKLGDPRTFHYLNQTNCYEVANVDDAREYLETRNAMDVVGISQEEQDAIFRVVASILHLGNINFMKGKEVDSSKVKDEKSNYHLQTAAELLMCDVKALEHSLCQRVIVTPDGNITKPLDPDSAALSRDALAKTVYSRLFDWIVDKINSSIGQDPNAASLIGVLDIYGFESFKINSFEQLCINLTNEKLQQHFNQHVFKMEQEEYTKEEINWSYVEFVDNQDVLDLIEKVLLLTFGSLLCNILCLLPPTVPRVMNTFCVSQKPGGIIALLDEACMFPKSTHETFAQKMYQTYKGHKRFSKPKLARTDFTINHYAGDVTYQADQFLDKNKDYVVAEHQALLNASRCSFVANLFPPLPEESSKQSKFSSIGTRFKQQLQALMETLNTTEPHYIRCVKPNTVLKPGIFENFNVLNQLRCGGVLEAIRISCAGYPTKRTFDEFLDRFGMLAPDISDGSDEKSACIAICDRMGLKGYQIGKTKVFLRAGQMAELDARRTEILANAVRRIQRQIRTHLTRKEFIALRRATIHIQKLWRGKLARKLYEQMRREAASIRIQKHARAHADRKSYKKLLASAIVIQTGMRAMAARNEYRHRRRTKAAIIVQTEWRRASAISAYKQQQKATLALQCLWRSKVARKELRKLKMAARETGALKEAKDKLEKRVEELTWRLEFEKHLRMDVEEAKGQEVAKLQNALEEMQGQLDEANAAIIREREAAKLAIEQAPPVIKEVPVVDETKLEMLRNHNEELEGEVGELKKKIEEFEEKYAEVERESKARLKEAEEAHLKSLQLQEAIERLESNLSSLESENQVLRQQALVAADNESLSEEVQALKSKIGSLEAENEVLRNRPVAVEHISVPAGVLTESKTLDNGHVKEEENKSTKEPSTVPILVKQGSLTEKQQENHDVLLKCLAEDKRFDKGRPVAACIVYKTLLQWRSFEAEKTNIFDRIIHTIRSSIESQENISDFAYWLSTTSTLLYLLQSSLKATNTSTVASHRNRASPATLFGRMAYGLRSSSVGMGISSGYSGMVGKTNNQSKVEAKYPALLFKQHLAACIEKLFGMIRDNLKKEISPFLHLCIQAPRSVKSRSIRGSSKNIHSNIVAKQQASSIHWQSIVNKLDQTLDIMSENHVPSMIMRKIFFQVFSFINVQLFNSLLLRRECCSFSNGEYLKLGLQELEQWCNKATDTYAGSSWDELQHIRQAVGFLVLLQKSQKSLNEITDELCPILSIPQIYRIGTMFWDDKYGTQGLSPDIIGKMRVLLAEDSINIPNNSFLLDVDSSIPFSMEEIFRSFGEDGGVNLSDVDPPPLIRQRSDFHFLVQQLTE 1589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3151804 3163459 + ClCG09G003590.2 Cla09g00324 279744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00324 1589 Gene3D Myosin VI head, motor domain, U50 subdomain 312 633 - -
Cla09g00324 1589 Pfam Myosin head (motor domain) 529 751 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla09g00324 1589 Pfam Myosin head (motor domain) 64 498 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla09g00324 1589 Coils Coil 908 942 - -
Cla09g00324 1589 CDD MyosinXI_CBD 1164 1551 IPR037975 GO:0007015
Cla09g00324 1589 ProSiteProfiles Myosin motor domain profile. 62 763 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla09g00324 1589 ProSiteProfiles IQ motif profile. 766 793 IPR000048 GO:0005515
Cla09g00324 1589 Pfam Myosin N-terminal SH3-like domain 9 46 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cla09g00324 1589 Gene3D - 699 761 - -
Cla09g00324 1589 Gene3D Kinesin motor domain 65 694 IPR036961 -
Cla09g00324 1589 PANTHER MYOSIN-12 19 1582 - -
Cla09g00324 1589 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla09g00324 1589 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla09g00324 1589 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla09g00324 1589 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla09g00324 1589 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla09g00324 1589 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 817 914 IPR027417 -
Cla09g00324 1589 Gene3D - 252 310 - -
Cla09g00324 1589 Coils Coil 1087 1114 - -
Cla09g00324 1589 Coils Coil 1004 1080 - -
Cla09g00324 1589 Coils Coil 947 981 - -
Cla09g00324 1589 ProSiteProfiles IQ motif profile. 789 818 IPR000048 GO:0005515
Cla09g00324 1589 SMART iq_5 788 810 IPR000048 GO:0005515
Cla09g00324 1589 SMART iq_5 813 835 IPR000048 GO:0005515
Cla09g00324 1589 SMART iq_5 836 858 IPR000048 GO:0005515
Cla09g00324 1589 SMART iq_5 765 787 IPR000048 GO:0005515
Cla09g00324 1589 SMART iq_5 884 906 IPR000048 GO:0005515
Cla09g00324 1589 SMART iq_5 861 883 IPR000048 GO:0005515
Cla09g00324 1589 Gene3D - 439 655 - -
Cla09g00324 1589 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cla09g00324 1589 ProSiteProfiles IQ motif profile. 837 866 IPR000048 GO:0005515
Cla09g00324 1589 SMART MYSc_2a 56 764 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cla09g00324 1589 PANTHER MYOSIN 19 1582 - -
Cla09g00324 1589 ProSiteProfiles IQ motif profile. 814 840 IPR000048 GO:0005515
Cla09g00324 1589 SMART DIL_2 1403 1510 IPR002710 -
Cla09g00324 1589 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 817 IPR027417 -
Cla09g00324 1589 Pfam IQ calmodulin-binding motif 816 835 IPR000048 GO:0005515
Cla09g00324 1589 Pfam IQ calmodulin-binding motif 769 786 IPR000048 GO:0005515
Cla09g00324 1589 Pfam IQ calmodulin-binding motif 887 906 IPR000048 GO:0005515
Cla09g00324 1589 Pfam IQ calmodulin-binding motif 790 809 IPR000048 GO:0005515
Cla09g00324 1589 Pfam IQ calmodulin-binding motif 839 858 IPR000048 GO:0005515
Cla09g00324 1589 ProSiteProfiles IQ motif profile. 885 914 IPR000048 GO:0005515
Cla09g00324 1589 ProSiteProfiles Dilute domain profile. 1213 1528 IPR002710 -
Cla09g00324 1589 CDD MYSc_Myo11 76 751 IPR036018 -
Cla09g00324 1589 Pfam DIL domain 1404 1507 IPR002710 -
Cla09g00324 1589 Gene3D - 816 866 - -
Cla09g00324 1589 Gene3D - 765 815 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01472 Cla-Chr3:30225431 Cla09g00324 Cla-Chr9:3151804 0 dispersed
Cla06g00123 Cla-Chr6:1339129 Cla09g00324 Cla-Chr9:3151804 0 dispersed
Cla08g00984 Cla-Chr8:22519933 Cla09g00324 Cla-Chr9:3151804 0 dispersed
Cla09g00324 Cla-Chr9:3151804 Cla09g00751 Cla-Chr9:7447918 0 dispersed
Cla09g00324 Cla-Chr9:3151804 Cla05g00393 Cla-Chr5:3553666 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00324 K10357 - csv:101207221 2892.83