Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00345 ATGGAGCTTGGCCTGAGCTTGGGCGACGCCCCCAAGCCCTTCCGCTTCGTCGAGAAGCAACCGCAAGTACCGCCGCCACAGCGAGTTCTTTCCCGGCCAGATTTAGGGTTCTGTGTCGACTTGTCGATTGGCCGTCCGTTTGTCGGAGAGAAAGAAGACGACGAAGAAAAACCTAATCAGAGAGAAGATGAATCCGACGCTAATGAAGATCCACCGATTCAACTCGATCTTCTCCCTCATAATCCCGTTCCTCGAAACCTAACTAATCCGTACCAAGGATTCCCATGGCCGTCGTCCGAAAACGAATCACTTCCCATTAATTTTTCTAACCGAAATCGGTTACTTCCAGATGAAGGCGAAGACCGAACCGCATCGCCGAACAGCGCAGCGTCGTCGTTTCAGATGGAATTTGGACTATACGGCGGCGGAGGAAACATTTCCTGCCGGAGAGATCAAATTGAAAATGGCGTAATGAACGAAGTAGGTGAATCTGGAAGAGCGTCTTCTAGAGCTAGCGATGAAGACGAAAATGGCTGTACGAGGAAGAAACTCAGACTCTCTAAAGAACAATCCGCTTTCCTTGAAGAAAGCTTCAAAGAACACAACACTTTAAACCCTAAACAGAAGCTAGCACTGGCTAAGCAACTGAATCTTCTTCCTCGCCAAGTGGAAGTTTGGTTCCAAAACAGAAGGGCTAGGACGAAATTGAAGCAAACGGAAGTGGATTGCGAGTATTTGAAAAGATGTTGTGAGACATTAACAGAAGAGAACAGACGGCTTCAAAAGGAGCTTCAAGAATTAAGAGCTTTGAAAACAACGAACTCATTCTACATGCAATTACCAGCCACAACACTCACCATGTGTCCTTCTTGTGAAAGAGTAACCTCAACTTCCGCCGCTTCCACCGTCGCTGCCGTCGCCACCAGTGGAGGCAAATCGACGGAGGGAGTTTCAAAACGATCTGGGTTCGCCATTGCTGGCCGACCCAGTTCTTCCTCTTTCCCATTTTCTGCTAAAACGCAGTCCCACCAGTCAACAGCTTCATGA 1047 48.33 MELGLSLGDAPKPFRFVEKQPQVPPPQRVLSRPDLGFCVDLSIGRPFVGEKEDDEEKPNQREDESDANEDPPIQLDLLPHNPVPRNLTNPYQGFPWPSSENESLPINFSNRNRLLPDEGEDRTASPNSAASSFQMEFGLYGGGGNISCRRDQIENGVMNEVGESGRASSRASDEDENGCTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLLPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTTNSFYMQLPATTLTMCPSCERVTSTSAASTVAAVATSGGKSTEGVSKRSGFAIAGRPSSSSFPFSAKTQSHQSTAS 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3389307 3390776 + ClCG09G003800.1 Cla09g00345 279765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00345 348 ProSitePatterns 'Homeobox' domain signature. 212 235 IPR017970 GO:0000981|GO:0006355
Cla09g00345 348 PANTHER PROTEIN, PUTATIVE-RELATED 55 340 - -
Cla09g00345 348 SMART halz 237 280 IPR003106 GO:0006355|GO:0043565
Cla09g00345 348 Gene3D - 185 235 - -
Cla09g00345 348 MobiDBLite consensus disorder prediction 46 68 - -
Cla09g00345 348 CDD homeodomain 181 238 IPR001356 GO:0003677
Cla09g00345 348 Coils Coil 243 273 - -
Cla09g00345 348 MobiDBLite consensus disorder prediction 307 348 - -
Cla09g00345 348 MobiDBLite consensus disorder prediction 46 130 - -
Cla09g00345 348 ProSiteProfiles 'Homeobox' domain profile. 177 237 IPR001356 GO:0003677
Cla09g00345 348 MobiDBLite consensus disorder prediction 325 348 - -
Cla09g00345 348 Pfam Homeodomain 181 235 IPR001356 GO:0003677
Cla09g00345 348 MobiDBLite consensus disorder prediction 85 110 - -
Cla09g00345 348 MobiDBLite consensus disorder prediction 1 31 - -
Cla09g00345 348 PANTHER - 55 340 - -
Cla09g00345 348 SMART HOX_1 179 241 IPR001356 GO:0003677
Cla09g00345 348 Pfam Homeobox associated leucine zipper 237 271 IPR003106 GO:0006355|GO:0043565
Cla09g00345 348 SUPERFAMILY Homeodomain-like 174 238 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g00345 Cla-Chr9:3389307 Cla10g00795 Cla-Chr10:17043236 4.63E-67 dispersed
Cla01g00591 Cla-Chr1:6708914 Cla09g00345 Cla-Chr9:3389307 2.17E-43 transposed
Cla01g01751 Cla-Chr1:32436325 Cla09g00345 Cla-Chr9:3389307 5.38E-72 transposed
Cla10g00236 Cla-Chr10:2788478 Cla09g00345 Cla-Chr9:3389307 2.97E-66 transposed
Cla10g01677 Cla-Chr10:32506524 Cla09g00345 Cla-Chr9:3389307 2.78E-94 wgd
Cla10g01206 Cla-Chr10:26697926 Cla09g00345 Cla-Chr9:3389307 2.24E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61669 PF00046 Homeodomain 5.30E-15 CL0123 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00345 K09338 - csv:101221600 567.77