Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla09g00345 | ATGGAGCTTGGCCTGAGCTTGGGCGACGCCCCCAAGCCCTTCCGCTTCGTCGAGAAGCAACCGCAAGTACCGCCGCCACAGCGAGTTCTTTCCCGGCCAGATTTAGGGTTCTGTGTCGACTTGTCGATTGGCCGTCCGTTTGTCGGAGAGAAAGAAGACGACGAAGAAAAACCTAATCAGAGAGAAGATGAATCCGACGCTAATGAAGATCCACCGATTCAACTCGATCTTCTCCCTCATAATCCCGTTCCTCGAAACCTAACTAATCCGTACCAAGGATTCCCATGGCCGTCGTCCGAAAACGAATCACTTCCCATTAATTTTTCTAACCGAAATCGGTTACTTCCAGATGAAGGCGAAGACCGAACCGCATCGCCGAACAGCGCAGCGTCGTCGTTTCAGATGGAATTTGGACTATACGGCGGCGGAGGAAACATTTCCTGCCGGAGAGATCAAATTGAAAATGGCGTAATGAACGAAGTAGGTGAATCTGGAAGAGCGTCTTCTAGAGCTAGCGATGAAGACGAAAATGGCTGTACGAGGAAGAAACTCAGACTCTCTAAAGAACAATCCGCTTTCCTTGAAGAAAGCTTCAAAGAACACAACACTTTAAACCCTAAACAGAAGCTAGCACTGGCTAAGCAACTGAATCTTCTTCCTCGCCAAGTGGAAGTTTGGTTCCAAAACAGAAGGGCTAGGACGAAATTGAAGCAAACGGAAGTGGATTGCGAGTATTTGAAAAGATGTTGTGAGACATTAACAGAAGAGAACAGACGGCTTCAAAAGGAGCTTCAAGAATTAAGAGCTTTGAAAACAACGAACTCATTCTACATGCAATTACCAGCCACAACACTCACCATGTGTCCTTCTTGTGAAAGAGTAACCTCAACTTCCGCCGCTTCCACCGTCGCTGCCGTCGCCACCAGTGGAGGCAAATCGACGGAGGGAGTTTCAAAACGATCTGGGTTCGCCATTGCTGGCCGACCCAGTTCTTCCTCTTTCCCATTTTCTGCTAAAACGCAGTCCCACCAGTCAACAGCTTCATGA | 1047 | 48.33 | MELGLSLGDAPKPFRFVEKQPQVPPPQRVLSRPDLGFCVDLSIGRPFVGEKEDDEEKPNQREDESDANEDPPIQLDLLPHNPVPRNLTNPYQGFPWPSSENESLPINFSNRNRLLPDEGEDRTASPNSAASSFQMEFGLYGGGGNISCRRDQIENGVMNEVGESGRASSRASDEDENGCTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLLPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTTNSFYMQLPATTLTMCPSCERVTSTSAASTVAAVATSGGKSTEGVSKRSGFAIAGRPSSSSFPFSAKTQSHQSTAS | 348 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 3389307 | 3390776 | + | ClCG09G003800.1 | Cla09g00345 | 279765 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla09g00345 | 348 | ProSitePatterns | 'Homeobox' domain signature. | 212 | 235 | IPR017970 | GO:0000981|GO:0006355 | |
Cla09g00345 | 348 | PANTHER | PROTEIN, PUTATIVE-RELATED | 55 | 340 | - | - | |
Cla09g00345 | 348 | SMART | halz | 237 | 280 | IPR003106 | GO:0006355|GO:0043565 | |
Cla09g00345 | 348 | Gene3D | - | 185 | 235 | - | - | |
Cla09g00345 | 348 | MobiDBLite | consensus disorder prediction | 46 | 68 | - | - | |
Cla09g00345 | 348 | CDD | homeodomain | 181 | 238 | IPR001356 | GO:0003677 | |
Cla09g00345 | 348 | Coils | Coil | 243 | 273 | - | - | |
Cla09g00345 | 348 | MobiDBLite | consensus disorder prediction | 307 | 348 | - | - | |
Cla09g00345 | 348 | MobiDBLite | consensus disorder prediction | 46 | 130 | - | - | |
Cla09g00345 | 348 | ProSiteProfiles | 'Homeobox' domain profile. | 177 | 237 | IPR001356 | GO:0003677 | |
Cla09g00345 | 348 | MobiDBLite | consensus disorder prediction | 325 | 348 | - | - | |
Cla09g00345 | 348 | Pfam | Homeodomain | 181 | 235 | IPR001356 | GO:0003677 | |
Cla09g00345 | 348 | MobiDBLite | consensus disorder prediction | 85 | 110 | - | - | |
Cla09g00345 | 348 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
Cla09g00345 | 348 | PANTHER | - | 55 | 340 | - | - | |
Cla09g00345 | 348 | SMART | HOX_1 | 179 | 241 | IPR001356 | GO:0003677 | |
Cla09g00345 | 348 | Pfam | Homeobox associated leucine zipper | 237 | 271 | IPR003106 | GO:0006355|GO:0043565 | |
Cla09g00345 | 348 | SUPERFAMILY | Homeodomain-like | 174 | 238 | IPR009057 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla09g00345 | Cla-Chr9:3389307 | Cla10g00795 | Cla-Chr10:17043236 | 4.63E-67 | dispersed | |
Cla01g00591 | Cla-Chr1:6708914 | Cla09g00345 | Cla-Chr9:3389307 | 2.17E-43 | transposed | |
Cla01g01751 | Cla-Chr1:32436325 | Cla09g00345 | Cla-Chr9:3389307 | 5.38E-72 | transposed | |
Cla10g00236 | Cla-Chr10:2788478 | Cla09g00345 | Cla-Chr9:3389307 | 2.97E-66 | transposed | |
Cla10g01677 | Cla-Chr10:32506524 | Cla09g00345 | Cla-Chr9:3389307 | 2.78E-94 | wgd | |
Cla10g01206 | Cla-Chr10:26697926 | Cla09g00345 | Cla-Chr9:3389307 | 2.24E-60 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61669 | PF00046 | Homeodomain | 5.30E-15 | CL0123 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla09g00345 | K09338 | - | csv:101221600 | 567.77 |