Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00383 ATGGCTATGGCTGGGCGTATGAGATCGATCATTCCTCAATTCAATCAGCTTCTGAAATCGGAGTCACTCACTCAGAGACCTGCTCTTCTAAGAGCCCTACTTTGCCCCACGACTCCCAACTCCGAGGTCTCGAGGAACTATGCAACTGCTTCCAAGAAAAGAGAGGAAAAAGTTAAAGTTCCCCTGGTTTTGTTTGGGGGTTCTGGAAACTATGCCTCTGCTTTGTACCTTGCAGCAGTAAAAGCTAATTCCTTGGATAAGGTTGAGAGAGAGCTTCTTGACCTTGTCGAGGCTTCACAGAGAAGTGCCACCTTCTCTCAGTTCACAAGAGATCCCTCAGTGTGTAAAGATACTAGGGTCAAGGCTATTGAGGATATTTGTGCTTCAGCTAAATTTTCAGAAATTGTAAAAAACTTTTTGGTTATATTGGCTGAGTATGGAAGGCTGAAATACATAGACAGCATTGCAAAGAGGTTTGTAGAGTTGACAATGGCTCATCGAGGAGAGGTGAAAGCCATTGTGACTACAGTTATTCCCCTCCCTCCTGAAGAAGAGAAAGAATTAAAGGAGACCCTGCAGGATATTATTGGACAAGGGAAAAGGGTCAAGCTTGAACAGAAGATTGATCCAAGTATTCTCGGCGGACTAGTTGTAGAATTCGGTGAGAAAGTGTTCGACATGTCAATTAAGACCAGAGCACGACAGATGGAGAGGTTCTTGCGAGAACCTGCAAACCTCCACAGCCTCTGA 750 44.67 MAMAGRMRSIIPQFNQLLKSESLTQRPALLRALLCPTTPNSEVSRNYATASKKREEKVKVPLVLFGGSGNYASALYLAAVKANSLDKVERELLDLVEASQRSATFSQFTRDPSVCKDTRVKAIEDICASAKFSEIVKNFLVILAEYGRLKYIDSIAKRFVELTMAHRGEVKAIVTTVIPLPPEEEKELKETLQDIIGQGKRVKLEQKIDPSILGGLVVEFGEKVFDMSIKTRARQMERFLREPANLHSL 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3740733 3744875 - ClCG09G004190.1 Cla09g00383 279803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00383 249 TIGRFAM ATP_synt_delta: ATP synthase F1, delta subunit 70 239 IPR000711 GO:0015986|GO:0046933
Cla09g00383 249 PANTHER ATP SYNTHASE SUBUNIT O, MITOCHONDRIAL 37 242 - -
Cla09g00383 249 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 68 169 IPR026015 -
Cla09g00383 249 Hamap ATP synthase subunit delta [atpD]. 63 242 IPR000711 GO:0015986|GO:0046933
Cla09g00383 249 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 202 221 IPR020781 GO:0015986|GO:0016020|GO:0046933
Cla09g00383 249 Gene3D - 67 160 IPR026015 -
Cla09g00383 249 PRINTS ATP synthase delta subunit signature 67 86 IPR000711 GO:0015986|GO:0046933
Cla09g00383 249 PRINTS ATP synthase delta subunit signature 137 148 IPR000711 GO:0015986|GO:0046933
Cla09g00383 249 PRINTS ATP synthase delta subunit signature 148 162 IPR000711 GO:0015986|GO:0046933
Cla09g00383 249 PRINTS ATP synthase delta subunit signature 200 215 IPR000711 GO:0015986|GO:0046933
Cla09g00383 249 PRINTS ATP synthase delta subunit signature 215 233 IPR000711 GO:0015986|GO:0046933
Cla09g00383 249 Pfam ATP synthase delta (OSCP) subunit 69 238 IPR000711 GO:0015986|GO:0046933
Cla09g00383 249 PANTHER ATP SYNTHASE DELTA CHAIN 37 242 IPR000711 GO:0015986|GO:0046933
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla09g00383 Cla10g01180 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g00383 Cla-Chr9:3740733 Cla08g00262 Cla-Chr8:5345009 4.98E-06 dispersed
Cla10g01180 Cla-Chr10:26412403 Cla09g00383 Cla-Chr9:3740733 2.33E-99 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00383 K02137 - csv:101206351 392.119