Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00386 ATGACAGACCCAAATTACTCAAATTCCTTCAACTTCATTCCTCTTCCTTCTTATCTTCCTCCTTCAAATTTCCCCTTTTCCCAATGCCGCCACCCTCTTCCTCCTCCTCCTCCTCCTCCTCCGCCGTCTTCGCCGCCGCAAGCCCTCCCTCTCCTCAACACCCTTTCGCCGGAAACCGCCGATCATCCCTCCTCCTCCACCACCACTTGCAGTTTCGATGACGAATCTGCCGCTCTTGCTCTTGACTTCAGCCTCTCTTGCCCTAGCTCCGATCTAGACTCCTCCTTTCATTCCTTCTCGCCGGACCCTGGCACCGGGAAAATCCTCGACGGTGACATATCCGACCACCCTTTGCCGATCTCCGGCAAGGGTCAGTTCTGGATTCCCACCCCATCTCAGATCCTCATCGGCCCTACTCAGTTCTCTTGCCCTCTTTGCTCTAAAGCCTTCAATAGATACAATAATCTTCAGATGCATATGTGGGGGCATGGATCGCAATACAGGAAAGGCCCAGAATCACTCAAAGGAACACAACCAACCGCAATGCTAAGGCTCCCATGCTATTGCTGCGCGGCTGGCTGCAAACACAACATCGACAACCCACGGTCGCGGCCGCTCAAGGATTTCCGCACCCTTCAAACGCATTACAAGCGCAAGCACGGAATCAAGCCCTTCACTTGTAGAAAATGCACCAAGGCCTTCGCTGTCAAAGGCGATTGGCGAACCCACGAGAAGAATTGCGGCAAGATTTGGTATTGCTTTTGTGGCTCTGACTTCAAACACAAACGCTCCCTTAAAGACCATATCAAGGCCTTTGGTCACGGCCATGGCGCCCTCGGTCTTGACTACTTTGATGACGACAATGAACCCTCTCCTGAACTCCAACTCCAACACCAATCACAACACGGCCTCTTCCTCCATCTTCATTAA 930 52.47 MTDPNYSNSFNFIPLPSYLPPSNFPFSQCRHPLPPPPPPPPPSSPPQALPLLNTLSPETADHPSSSTTTCSFDDESAALALDFSLSCPSSDLDSSFHSFSPDPGTGKILDGDISDHPLPISGKGQFWIPTPSQILIGPTQFSCPLCSKAFNRYNNLQMHMWGHGSQYRKGPESLKGTQPTAMLRLPCYCCAAGCKHNIDNPRSRPLKDFRTLQTHYKRKHGIKPFTCRKCTKAFAVKGDWRTHEKNCGKIWYCFCGSDFKHKRSLKDHIKAFGHGHGALGLDYFDDDNEPSPELQLQHQSQHGLFLHLH 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3778719 3782641 + ClCG09G004220.1 Cla09g00386 279806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00386 309 Pfam Zinc finger, C2H2 type 141 160 IPR013087 -
Cla09g00386 309 SUPERFAMILY beta-beta-alpha zinc fingers 134 163 IPR036236 -
Cla09g00386 309 SMART c2h2final6 225 245 IPR013087 -
Cla09g00386 309 SMART c2h2final6 141 163 IPR013087 -
Cla09g00386 309 SMART c2h2final6 251 274 IPR013087 -
Cla09g00386 309 SUPERFAMILY beta-beta-alpha zinc fingers 208 245 IPR036236 -
Cla09g00386 309 Gene3D Classic Zinc Finger 140 163 - -
Cla09g00386 309 PANTHER ZINC FINGER PROTEIN WIP2 28 295 IPR043584 GO:0003700|GO:0010468
Cla09g00386 309 Gene3D Classic Zinc Finger 203 276 - -
Cla09g00386 309 MobiDBLite consensus disorder prediction 27 48 - -
Cla09g00386 309 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 28 295 - -
Cla09g00386 309 ProSitePatterns Zinc finger C2H2 type domain signature. 143 163 IPR013087 -
Cla09g00386 309 MobiDBLite consensus disorder prediction 26 69 - -
Cla09g00386 309 MobiDBLite consensus disorder prediction 49 69 - -
Cla09g00386 309 ProSiteProfiles Zinc finger C2H2 type domain profile. 141 168 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g00386 Cla-Chr9:3778719 Cla10g01643 Cla-Chr10:32073533 2.87E-102 dispersed
Cla02g02261 Cla-Chr2:37716394 Cla09g00386 Cla-Chr9:3778719 6.21E-114 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61673 PF00096 zf-C2H2 0.0016 CL0361 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00386 - - bhj:120085421 534.258