Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla09g00386 | ATGACAGACCCAAATTACTCAAATTCCTTCAACTTCATTCCTCTTCCTTCTTATCTTCCTCCTTCAAATTTCCCCTTTTCCCAATGCCGCCACCCTCTTCCTCCTCCTCCTCCTCCTCCTCCGCCGTCTTCGCCGCCGCAAGCCCTCCCTCTCCTCAACACCCTTTCGCCGGAAACCGCCGATCATCCCTCCTCCTCCACCACCACTTGCAGTTTCGATGACGAATCTGCCGCTCTTGCTCTTGACTTCAGCCTCTCTTGCCCTAGCTCCGATCTAGACTCCTCCTTTCATTCCTTCTCGCCGGACCCTGGCACCGGGAAAATCCTCGACGGTGACATATCCGACCACCCTTTGCCGATCTCCGGCAAGGGTCAGTTCTGGATTCCCACCCCATCTCAGATCCTCATCGGCCCTACTCAGTTCTCTTGCCCTCTTTGCTCTAAAGCCTTCAATAGATACAATAATCTTCAGATGCATATGTGGGGGCATGGATCGCAATACAGGAAAGGCCCAGAATCACTCAAAGGAACACAACCAACCGCAATGCTAAGGCTCCCATGCTATTGCTGCGCGGCTGGCTGCAAACACAACATCGACAACCCACGGTCGCGGCCGCTCAAGGATTTCCGCACCCTTCAAACGCATTACAAGCGCAAGCACGGAATCAAGCCCTTCACTTGTAGAAAATGCACCAAGGCCTTCGCTGTCAAAGGCGATTGGCGAACCCACGAGAAGAATTGCGGCAAGATTTGGTATTGCTTTTGTGGCTCTGACTTCAAACACAAACGCTCCCTTAAAGACCATATCAAGGCCTTTGGTCACGGCCATGGCGCCCTCGGTCTTGACTACTTTGATGACGACAATGAACCCTCTCCTGAACTCCAACTCCAACACCAATCACAACACGGCCTCTTCCTCCATCTTCATTAA | 930 | 52.47 | MTDPNYSNSFNFIPLPSYLPPSNFPFSQCRHPLPPPPPPPPPSSPPQALPLLNTLSPETADHPSSSTTTCSFDDESAALALDFSLSCPSSDLDSSFHSFSPDPGTGKILDGDISDHPLPISGKGQFWIPTPSQILIGPTQFSCPLCSKAFNRYNNLQMHMWGHGSQYRKGPESLKGTQPTAMLRLPCYCCAAGCKHNIDNPRSRPLKDFRTLQTHYKRKHGIKPFTCRKCTKAFAVKGDWRTHEKNCGKIWYCFCGSDFKHKRSLKDHIKAFGHGHGALGLDYFDDDNEPSPELQLQHQSQHGLFLHLH | 309 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 3778719 | 3782641 | + | ClCG09G004220.1 | Cla09g00386 | 279806 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla09g00386 | 309 | Pfam | Zinc finger, C2H2 type | 141 | 160 | IPR013087 | - | |
Cla09g00386 | 309 | SUPERFAMILY | beta-beta-alpha zinc fingers | 134 | 163 | IPR036236 | - | |
Cla09g00386 | 309 | SMART | c2h2final6 | 225 | 245 | IPR013087 | - | |
Cla09g00386 | 309 | SMART | c2h2final6 | 141 | 163 | IPR013087 | - | |
Cla09g00386 | 309 | SMART | c2h2final6 | 251 | 274 | IPR013087 | - | |
Cla09g00386 | 309 | SUPERFAMILY | beta-beta-alpha zinc fingers | 208 | 245 | IPR036236 | - | |
Cla09g00386 | 309 | Gene3D | Classic Zinc Finger | 140 | 163 | - | - | |
Cla09g00386 | 309 | PANTHER | ZINC FINGER PROTEIN WIP2 | 28 | 295 | IPR043584 | GO:0003700|GO:0010468 | |
Cla09g00386 | 309 | Gene3D | Classic Zinc Finger | 203 | 276 | - | - | |
Cla09g00386 | 309 | MobiDBLite | consensus disorder prediction | 27 | 48 | - | - | |
Cla09g00386 | 309 | PANTHER | ZINC FINGER PROTEIN WIP2-LIKE | 28 | 295 | - | - | |
Cla09g00386 | 309 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 143 | 163 | IPR013087 | - | |
Cla09g00386 | 309 | MobiDBLite | consensus disorder prediction | 26 | 69 | - | - | |
Cla09g00386 | 309 | MobiDBLite | consensus disorder prediction | 49 | 69 | - | - | |
Cla09g00386 | 309 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 141 | 168 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla09g00386 | Cla-Chr9:3778719 | Cla10g01643 | Cla-Chr10:32073533 | 2.87E-102 | dispersed | |
Cla02g02261 | Cla-Chr2:37716394 | Cla09g00386 | Cla-Chr9:3778719 | 6.21E-114 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61673 | PF00096 | zf-C2H2 | 0.0016 | CL0361 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla09g00386 | - | - | bhj:120085421 | 534.258 |