Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00408 ATGGCGGAATCCCAGCATCGCGCTAAGCGCCCTAGAATTACGAGGGGGGAAGATGATTATATGCCTGGAAGTATTATTGAGATTGAGCTTCATAACTTTATGACCTTTAACCACTTGAAATGTAAACCAGGGTCACGTCTAAACCTTGTAATTGGGCCTAACGGATCTGGTAAAAGCTCTATTGTATGTGCTATTGCCCTTGGCCTTGGTGGTGAGCCTCAGCTCCTTGGAAGGGCAACCAGTGTTGGAGCATATGTGAAGCGTGGGGAGGAGTCTGGTTATGTTAGAATAACCTTGAGAGGGAATACTAAAGAGGAAAAGATTACAATTACACGTAAAATGGACATACATAACAAATCTGAGTGGTTGTTCAACGGAAAAGTTGTGCCAAAAAAAGATGTAGCTGGAATTATTCAAAGGTTTAACATTCAAGTTAATAATTTGACTCAATTTTTACCTCAGGACAGGGTTTGTGAGTTTGCCAAATTAACTCCTGTGCAACTTTTAGAAGAGACTGAAAAGGCAGTTGGTGATCCTCAACTTCCTATCCTACATCGTGCACTTGTTGATAAAAGCCATGGCATAAAAAGTATAGAAAGAGCTGTTGAGAAAAATGGTGACACCCTAGATCAGTTGAAGGCATTAAATGTCGAGCAAGAGAAAGATGTTGAGCGTGTTCGTCAAAGAGATGAACTTTTAAAAAAGGTTGAGTCCATGAAGAAGAAACTGCCATGGCTAAAGTATGACATGAAAAAGGCTGAATACATGGAAGTTAAGGAAAAGGAAAAGGAGGCCCAAAAAAAGTTAGATGAAGCTGCTAACACTTTGAATGAACTAAAGGAGCCAATTGAGAAACAAAAAATGGAGAAGGCAAAGTTGGATGCTAAAACTAAAAAGTATAGCACTCTTATTAATGGTAATCACAAGAAAAGGATGGAACTTCAGGAAACTGAAAACCATTTGGGGGTGCAAGTGCAAGGAAAATTGAAAGAAATGGAAGACTTGAGGAAACAAGAAGAATCTCGTCAACAGAGAATCTTGCGAGCTAAAGAGGAACTTGAAGCTGCTGAATTCGAACTTCAGAATTTGCCTCCTTATGAACATCCCAAGGATGAGATTGAACGGTTGCGTGCTCAAATTTTGGAGCTGGAAGTTTCTGCAAGTCAGAAGAGACTTATGAAGTCAGAGATTGAGAAAAATATTTCCCAAAAAAGAAATACTTTGAGGCAATGCTTGGATAGGTTAAAGGATATGGAGAATACTAATACAAAACTACTACAGGCATTGAGAAATTCTGGAACAGAGAAGATTTTTGAAGCTTATCACTGGCTTCAAGAACATCGCCATGAGTTCAAGAAGGAGGTGTATGGTCCAGTGTTGCTAGAGGTTAATGTGTCAAATCGGATTCATGCTGACTACTTAGAAGGTCATATTCCATCCTATGTCTGGAAGTCCTTCATAACCCAAGATTCTGATGATCGTGACATTATGGTAAAAAATTTGGGCTCATTCGGTGTTCCTGTCTTAAACTATGTGGGAGGTGAAAGGCGCACAAATCAGCATTTTGAGTTGTCTGAAGAGGTTCGTGCATTTGGCATATATTCTCGGCTAGACCAAATTTTTGAGGCTCCTGCAGCTGTAAAGGAGGTTTTGACCATGCAGTTTGGTTTGGAACATTCATTTATTGGTTCAAAGGTAACTGATCAAAAGGCAGACGAGGTCTCAAAATTGGGAATTTTAGATTTTTGGACTCCAGATAATCATTATCGATGGTCTCGCTCTAGATACGGTGGTCATATGTCCGGAAGTGTGGAACCAGTTGATCGCTCACGTCTTCTTTTGTGCAACTTGGATGCGGGAGAAATTGATGGGCTTCGCTCCAGGAAAAATGAGCTAGAAGAATCTGTTTCTGCCTTAGAAGAAAATTGTAAATCATGTCAGAATGAGCTAAGATTGATAGAGGATGAAGAAGCTAAACTTCGCAAACATCGGGATGACATTTTAAATACTGTGCAACATGAGAAGAGAAAACGACGTGAAATGGAAAATCGCATTGATCAAAGGAAAAAGAAATTAGAATCTATGGAGCGGGAAGATGACCTGGATACTGTTGTGGCCAAGCTTGTCGACCAAGCTGCAAATTTTAACATTCAAAGGTTCCATTGTGTAATTGAAATTAAGCATTTGCTTCTTGAAGCCGTTTCCTATAGACAGAGCTTGACTAAGAACCACATGGCCTCCATTGAAATTGAAGCAAAGATCAGAGAATTGGAGGTAAATCTGAAGCAGCATGAAAAGGTTGCTCTGCAAGCGTCAGTGCAGTTTGAGTACTGCAAGAAGGAAGTTGAGGACTATCGACAGCAACTTTCAGCTGCCAAGAAGTTTGCAGAATCTATTGCTGAGATCACACCTGACCTTGAGAAGGAATTTCTTGAGATGCCCACTACAATTGAGGAATTGGAGGCCGCTATTCAAGATAATGTTTCTCAAGCTAATTCCATTCTATTCTTAAACCATAACGTGCTTGAGGAATACGAACATCGTCAGAATCAGATAAACACCATTGCACGGAAACTAGAAGCTGATAAACATGAACTAAGGAAGTGTATGGCTGAAGTTGAAGAGCTGAAGGCAAATTGGCTCCCAACATTAAGAAGACTTGTTTCTCAGATAAATGAAAGTTTTAGTCGCAATTTTCAAGAGATGGCTGTTGCTGGAGAAGTGTTATTGGATGAACACGATATGGACTTTGATCAATTTGGAATATTAATTAAAGTGAAGTTCAGACAAGCAGGTCAGCTTCAGGTTCTCAGTGCACATCATCAATCTGGAGGGGAACGCTCAGTGTCGACAATTCTGTATCTTGTTTCCCTTCAAGACCTTACCAACTGCCCATTTAGAGTAGTTGACGAGATAAACCAAGGAATGGATCCCATAAATGAACGGAAGATGTTCCAGCAATTGGTGAGAGCTGCCAGCCAAACCAATACCCCACAGTGTTTCCTACTGACTCCAAAGTTACTTCCAGAACTGGAATATAGTGAGGCCTGTAGTATACTGAATATAATGAATGGTCCTTGGATCGAGCAGCCCTCAAGAGCATGGAGCCATGGAGATAGCTGGGGAACGTTGATGAACTATGTAGGAGAAAGCCGATGTTGA 3162 40.58 MAESQHRAKRPRITRGEDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSSIVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEEKITITRKMDIHNKSEWLFNGKVVPKKDVAGIIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPILHRALVDKSHGIKSIERAVEKNGDTLDQLKALNVEQEKDVERVRQRDELLKKVESMKKKLPWLKYDMKKAEYMEVKEKEKEAQKKLDEAANTLNELKEPIEKQKMEKAKLDAKTKKYSTLINGNHKKRMELQETENHLGVQVQGKLKEMEDLRKQEESRQQRILRAKEELEAAEFELQNLPPYEHPKDEIERLRAQILELEVSASQKRLMKSEIEKNISQKRNTLRQCLDRLKDMENTNTKLLQALRNSGTEKIFEAYHWLQEHRHEFKKEVYGPVLLEVNVSNRIHADYLEGHIPSYVWKSFITQDSDDRDIMVKNLGSFGVPVLNYVGGERRTNQHFELSEEVRAFGIYSRLDQIFEAPAAVKEVLTMQFGLEHSFIGSKVTDQKADEVSKLGILDFWTPDNHYRWSRSRYGGHMSGSVEPVDRSRLLLCNLDAGEIDGLRSRKNELEESVSALEENCKSCQNELRLIEDEEAKLRKHRDDILNTVQHEKRKRREMENRIDQRKKKLESMEREDDLDTVVAKLVDQAANFNIQRFHCVIEIKHLLLEAVSYRQSLTKNHMASIEIEAKIRELEVNLKQHEKVALQASVQFEYCKKEVEDYRQQLSAAKKFAESIAEITPDLEKEFLEMPTTIEELEAAIQDNVSQANSILFLNHNVLEEYEHRQNQINTIARKLEADKHELRKCMAEVEELKANWLPTLRRLVSQINESFSRNFQEMAVAGEVLLDEHDMDFDQFGILIKVKFRQAGQLQVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQTNTPQCFLLTPKLLPELEYSEACSILNIMNGPWIEQPSRAWSHGDSWGTLMNYVGESRC 1053
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3894946 3915417 + ClCG09G004390.2 Cla09g00408 279828

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00408 1053 CDD ABC_SMC5_euk 926 1028 - -
Cla09g00408 1053 Coils Coil 248 289 - -
Cla09g00408 1053 CDD ABC_SMC5_euk 23 180 - -
Cla09g00408 1053 Gene3D - 24 213 IPR027417 -
Cla09g00408 1053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 994 IPR027417 -
Cla09g00408 1053 Gene3D - 585 707 - -
Cla09g00408 1053 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 19 1049 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Cla09g00408 1053 Coils Coil 329 356 - -
Cla09g00408 1053 Coils Coil 842 879 - -
Cla09g00408 1053 Gene3D - 847 1022 IPR027417 -
Cla09g00408 1053 Coils Coil 401 428 - -
Cla09g00408 1053 Coils Coil 747 774 - -
Cla09g00408 1053 Coils Coil 622 698 - -
Cla09g00408 1053 Pfam RecF/RecN/SMC N terminal domain 25 994 IPR003395 -
Cla09g00408 1053 Coils Coil 209 229 - -
Cla09g00408 1053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 293 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00408 K22803 SMC5; structural maintenance of chromosomes protein 5 - csv:101210248 1995.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g01603 Cla-Chr7:33341372 Cla09g00408 Cla-Chr9:3894946 1.62E-18 dispersed
Cla09g00408 Cla-Chr9:3894946 Cla09g00763 Cla-Chr9:7622855 2.12E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g1074 . . . . . . . . . Cmo17g00945 . . . . Sed07g0592 . Cpe12g00841 Bhi09g00709 Tan06g0629 Cmetu01g0859 . Hepe03g1771 . . . . . . . . . . Cone20ag1052 . . Lsi02g02546 . . . . . . . . . . . . . . . Cma17g00970 . Car17g00928 . . . . . . . . . Cla09g00408 Cam09g0435 Cec09g0438 Cco09g0425 Clacu09g0440 . Cre09g0421 . . Chy01g01830 Cme01g02432
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla09g00408 . 4 1044 Structural Maintenance of Chromosomes family AT5G15920 69.1 0.0e+00 1393.3
Cla07g01603 . 13 1098 Structural Maintenance of Chromosomes family AT5G07660 60.8 0.0e+00 1219.5
Cla07g01603 . 10 1098 Structural Maintenance of Chromosomes family AT5G61460 63.8 0.0e+00 1296.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008822 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla09g00408 Cla_Chr09 FPKM 0.0 0.0 0.0 0.0 3.349166 0.0 1.468133 3.767929 3.230531 2.881285