Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00431 ATGGGATGCTTTGGTTGCTGCGAAGAAGATGGTATCCAGAAGCCTGCTGATAACAGCAGCATGTACCAAGTAAAAGCTTCAGCAGATAGTAAAAAAGTAAAGCTCTGTCATGTAGGAACTGATGAAGGCTATCACAAACGGCAAACTGCACCTAAAAGTCCTCCAATAGTGAAAATGCGGCCCATTGAAGTCCCTGCCATATCATTTGAGGAACTGAAGGAGGTTACGAAAAATTTCGATGCTGACTGTTTGATTGGAGAGGGTTCCTACGGTAGAGTATACTATGGGGTATTTACAAGTGGGCAGACTGTGGGAATCAAAAAGTTGGATGCCAGCAAACAATCGGATGATGAATTCTTATCCCAGGTCTCCATGGTTTCAAGACTAAAGCACCATAATTTTCTAAACTTGATTGGGTACTGTGTTGATGGCAATTCTCGAATTCTTGCATATGAGTATGCTTCAAATGGATCTCTTCACGACATTTTACACGGGAGGAAAGGAGTCAAAGGAGCACAACCCGGCCCTGTTCTTTCCTGGGCACAGAGAGTAAAAATTGCTGTAGGTGCTGCAAAGGGTTTGGAGTATTTGCATGAAAAGGTCGATCCTCATATCATCCATCGGGACATAAAATCCAGCAACGTACTAATATTTGATGATGATTTGGCGAAAATTGCTGACTTTGATTTGTCGAACCAAGCCCCTGATATGGCTGCACGGCTTCATTCCACCCGTGTTCTTGGAACCTTTGGCTATCATGCTCCTGAATACGCAATGACTGGACAATTGAATGCCAAGAGTGATGTGTACAGCTTTGGTGTTGTCCTGCTTGAACTTTTGACAGGAAGAAAGCCAGTTGATCATACATTGCCTCGAGGACAGCAAAGCCTCGTGACATGGGCCACGCCCAAACTTTGCGAGGATAAAGTTAAGCAATGTGTTGATGCAAAACTAGGAGATGAGTACCCTCCAAAGTCAGTTGCAAAGTTTGCAGCGGTTGCTGCATTGTGCGTTCAATATGAAGCAGATTTCAGACCAAACATGAGTATTGTGGTCAAAGCCCTGCAGCCTCTGTTAAATGTCCGACCTGGTCCTGGCGGTGAAGCACCAACTCTTTAA 1119 44.41 MGCFGCCEEDGIQKPADNSSMYQVKASADSKKVKLCHVGTDEGYHKRQTAPKSPPIVKMRPIEVPAISFEELKEVTKNFDADCLIGEGSYGRVYYGVFTSGQTVGIKKLDASKQSDDEFLSQVSMVSRLKHHNFLNLIGYCVDGNSRILAYEYASNGSLHDILHGRKGVKGAQPGPVLSWAQRVKIAVGAAKGLEYLHEKVDPHIIHRDIKSSNVLIFDDDLAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLCEDKVKQCVDAKLGDEYPPKSVAKFAAVAALCVQYEADFRPNMSIVVKALQPLLNVRPGPGGEAPTL 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4111706 4115898 - ClCG09G004620.2 Cla09g00431 279851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00431 372 ProSiteProfiles Protein kinase domain profile. 79 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g00431 372 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 367 - -
Cla09g00431 372 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 367 - -
Cla09g00431 372 Gene3D Phosphorylase Kinase; domain 1 41 153 - -
Cla09g00431 372 CDD STKc_IRAK 85 358 - -
Cla09g00431 372 SUPERFAMILY Protein kinase-like (PK-like) 54 355 IPR011009 -
Cla09g00431 372 SMART serkin_6 79 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g00431 372 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Cla09g00431 372 Gene3D Transferase(Phosphotransferase) domain 1 154 362 - -
Cla09g00431 372 Pfam Protein tyrosine and serine/threonine kinase 84 355 IPR001245 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla09g00431 Cla10g01125 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g00431 Cla-Chr9:4111706 Cla10g01096 Cla-Chr10:25170630 1.41E-91 dispersed
Cla07g01510 Cla-Chr7:32325904 Cla09g00431 Cla-Chr9:4111706 6.92E-178 transposed
Cla08g00446 Cla-Chr8:13559356 Cla09g00431 Cla-Chr9:4111706 2.22E-177 transposed
Cla10g01682 Cla-Chr10:32547405 Cla09g00431 Cla-Chr9:4111706 8.20E-172 transposed
Cla10g01125 Cla-Chr10:25727248 Cla09g00431 Cla-Chr9:4111706 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80790 PF07714 PK_Tyr_Ser-Thr 1.50E-44 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00431 K13436 - csv:101215263 684.1