Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla09g00444 | ATGGTGGCTGAAGCTGAGGTTGTTGTTTGTTCGAAGAGCCTCCCGGTTTTGGAGGTCCCGTATTTCGGTAAAGAGACTCATCTTGTGGATGAAATTGAGTCCATCGATGGTGGGATTTCGGTTGATCCGACTCTCAATCGTGTTCGTGCTTCCGAATCTGTTTGTTCCAGTTCTCAATCGGATATTAAACCCATGAAGAAAATTCCAGATTCCGACGTCGATACGGAGAACGGAAGGGAATTTCCGAGCCTCCGGTCGGGGAGCTTTGCTGATATTGGCCCTAGGAGATACATGGAAGATGAACATATACGGATAGATGATTTGTCTTCACATTTAGGATCGCTCTTTAAGTTTCCCAAGCCAAGTGCTTTCTATGGGGTATTCGATGGACATGGAGGTCCTGAAGCAGCAGCTTATATCAGAAAGAACGTTCTTAGACTCTTTTTTGAGGATGTTAGTTTTCCTCAAATTCCAGATATTGGTGAAGTCTTGCCGGAGGAGATAGAAAATTGTCTCCGAAAAGCATTTCTTCTAGCTGATCGAGCTCTGGCTGATGATTCCAGTGTCAGTAGTTCATCCGGGACAACGGCCCTGACAGCTCTTGTGCTTGGAAGGCATTTAATGGTGGCAAATGCTGGAGATTGCCGAGCTGTTCTCAGCCGGAATGGGGAGGCAGTAGATATGTCTCAAGACCACCGGCCAGTTTATTCTCCAGAGAAGCAACGGGTAGAAGAGTTGGGTGGCTTTGTTGATGGTGGCTATCTCAACGGGGTTTTATCGGTTTCCAGGGCTTTGGGGGATTGGGACATGAAGCTCCCTGATGGTTCTCCTTCGCCTCTCATTGCAGAACCAGAATGCAGGCAGGTGGTGCTTACAGAAGAGGATGAGTTCTTGATCATAGCCTGTGATGGGATTTGGGACGTGATGTCGAGCCAACAAGCAGTCAATGTAGTTCGACAGGGGCTTCAACGTCACGATGACCCTGAGCGGTGTGCTCGAGACCTTGTCCTTCAGGCTTTGCGACTAGACTCATTCGACAACCTCACTGTTGTTGTTGTTTGCTTCTCCAGTTTCCATCCTGGCAATTCTCCACGACCACAGCAGCGGAACTTAAGATACTGCAGTCTCTCTGCACAGGCTCTTTGTAGCTTGCAAAGATGGCTGGATAACAGTGGATGCCAATGA | 1185 | 48.19 | MVAEAEVVVCSKSLPVLEVPYFGKETHLVDEIESIDGGISVDPTLNRVRASESVCSSSQSDIKPMKKIPDSDVDTENGREFPSLRSGSFADIGPRRYMEDEHIRIDDLSSHLGSLFKFPKPSAFYGVFDGHGGPEAAAYIRKNVLRLFFEDVSFPQIPDIGEVLPEEIENCLRKAFLLADRALADDSSVSSSSGTTALTALVLGRHLMVANAGDCRAVLSRNGEAVDMSQDHRPVYSPEKQRVEELGGFVDGGYLNGVLSVSRALGDWDMKLPDGSPSPLIAEPECRQVVLTEEDEFLIIACDGIWDVMSSQQAVNVVRQGLQRHDDPERCARDLVLQALRLDSFDNLTVVVVCFSSFHPGNSPRPQQRNLRYCSLSAQALCSLQRWLDNSGCQ | 394 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 4222654 | 4225588 | - | ClCG09G004780.1 | Cla09g00444 | 279864 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla09g00444 | 394 | SUPERFAMILY | PP2C-like | 80 | 357 | IPR036457 | - | |
| Cla09g00444 | 394 | Pfam | Protein phosphatase 2C | 95 | 347 | IPR001932 | - | |
| Cla09g00444 | 394 | ProSitePatterns | PPM-type phosphatase domain signature. | 124 | 132 | IPR000222 | GO:0043169 | |
| Cla09g00444 | 394 | Gene3D | - | 65 | 359 | IPR036457 | - | |
| Cla09g00444 | 394 | PANTHER | PROTEIN PHOSPHATASE 2C 49-RELATED | 1 | 373 | - | - | |
| Cla09g00444 | 394 | MobiDBLite | consensus disorder prediction | 59 | 79 | - | - | |
| Cla09g00444 | 394 | MobiDBLite | consensus disorder prediction | 65 | 79 | - | - | |
| Cla09g00444 | 394 | SMART | PP2C_4 | 75 | 353 | IPR001932 | - | |
| Cla09g00444 | 394 | CDD | PP2Cc | 85 | 355 | IPR001932 | - | |
| Cla09g00444 | 394 | ProSiteProfiles | PPM-type phosphatase domain profile. | 85 | 355 | IPR001932 | - | |
| Cla09g00444 | 394 | SMART | PP2C_SIG_2 | 100 | 355 | IPR001932 | - | |
| Cla09g00444 | 394 | PANTHER | PROTEIN PHOSPHATASE 2C | 1 | 373 | IPR015655 | GO:0004722|GO:0006470 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla09g00303 | Cla-Chr9:2908885 | Cla09g00444 | Cla-Chr9:4222654 | 5.39E-34 | dispersed | |
| Cla09g00444 | Cla-Chr9:4222654 | Cla05g01655 | Cla-Chr5:28135087 | 2.83E-40 | dispersed | |
| Cla02g01687 | Cla-Chr2:31763415 | Cla09g00444 | Cla-Chr9:4222654 | 3.01E-84 | transposed | |
| Cla05g00981 | Cla-Chr5:9876491 | Cla09g00444 | Cla-Chr9:4222654 | 2.45E-26 | transposed | |
| Cla07g00409 | Cla-Chr7:5353131 | Cla09g00444 | Cla-Chr9:4222654 | 7.63E-37 | transposed | |
| Cla11g01835 | Cla-Chr11:31986111 | Cla09g00444 | Cla-Chr9:4222654 | 2.89E-109 | transposed | |
| Cla06g00403 | Cla-Chr6:4945314 | Cla09g00444 | Cla-Chr9:4222654 | 2.61E-126 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla09g00444 | K14803 | - | csv:101216626 | 713.761 |