Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00444 ATGGTGGCTGAAGCTGAGGTTGTTGTTTGTTCGAAGAGCCTCCCGGTTTTGGAGGTCCCGTATTTCGGTAAAGAGACTCATCTTGTGGATGAAATTGAGTCCATCGATGGTGGGATTTCGGTTGATCCGACTCTCAATCGTGTTCGTGCTTCCGAATCTGTTTGTTCCAGTTCTCAATCGGATATTAAACCCATGAAGAAAATTCCAGATTCCGACGTCGATACGGAGAACGGAAGGGAATTTCCGAGCCTCCGGTCGGGGAGCTTTGCTGATATTGGCCCTAGGAGATACATGGAAGATGAACATATACGGATAGATGATTTGTCTTCACATTTAGGATCGCTCTTTAAGTTTCCCAAGCCAAGTGCTTTCTATGGGGTATTCGATGGACATGGAGGTCCTGAAGCAGCAGCTTATATCAGAAAGAACGTTCTTAGACTCTTTTTTGAGGATGTTAGTTTTCCTCAAATTCCAGATATTGGTGAAGTCTTGCCGGAGGAGATAGAAAATTGTCTCCGAAAAGCATTTCTTCTAGCTGATCGAGCTCTGGCTGATGATTCCAGTGTCAGTAGTTCATCCGGGACAACGGCCCTGACAGCTCTTGTGCTTGGAAGGCATTTAATGGTGGCAAATGCTGGAGATTGCCGAGCTGTTCTCAGCCGGAATGGGGAGGCAGTAGATATGTCTCAAGACCACCGGCCAGTTTATTCTCCAGAGAAGCAACGGGTAGAAGAGTTGGGTGGCTTTGTTGATGGTGGCTATCTCAACGGGGTTTTATCGGTTTCCAGGGCTTTGGGGGATTGGGACATGAAGCTCCCTGATGGTTCTCCTTCGCCTCTCATTGCAGAACCAGAATGCAGGCAGGTGGTGCTTACAGAAGAGGATGAGTTCTTGATCATAGCCTGTGATGGGATTTGGGACGTGATGTCGAGCCAACAAGCAGTCAATGTAGTTCGACAGGGGCTTCAACGTCACGATGACCCTGAGCGGTGTGCTCGAGACCTTGTCCTTCAGGCTTTGCGACTAGACTCATTCGACAACCTCACTGTTGTTGTTGTTTGCTTCTCCAGTTTCCATCCTGGCAATTCTCCACGACCACAGCAGCGGAACTTAAGATACTGCAGTCTCTCTGCACAGGCTCTTTGTAGCTTGCAAAGATGGCTGGATAACAGTGGATGCCAATGA 1185 48.19 MVAEAEVVVCSKSLPVLEVPYFGKETHLVDEIESIDGGISVDPTLNRVRASESVCSSSQSDIKPMKKIPDSDVDTENGREFPSLRSGSFADIGPRRYMEDEHIRIDDLSSHLGSLFKFPKPSAFYGVFDGHGGPEAAAYIRKNVLRLFFEDVSFPQIPDIGEVLPEEIENCLRKAFLLADRALADDSSVSSSSGTTALTALVLGRHLMVANAGDCRAVLSRNGEAVDMSQDHRPVYSPEKQRVEELGGFVDGGYLNGVLSVSRALGDWDMKLPDGSPSPLIAEPECRQVVLTEEDEFLIIACDGIWDVMSSQQAVNVVRQGLQRHDDPERCARDLVLQALRLDSFDNLTVVVVCFSSFHPGNSPRPQQRNLRYCSLSAQALCSLQRWLDNSGCQ 394
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 4222654 4225588 - ClCG09G004780.1 Cla09g00444 279864
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00444 394 SUPERFAMILY PP2C-like 80 357 IPR036457 -
Cla09g00444 394 Pfam Protein phosphatase 2C 95 347 IPR001932 -
Cla09g00444 394 ProSitePatterns PPM-type phosphatase domain signature. 124 132 IPR000222 GO:0043169
Cla09g00444 394 Gene3D - 65 359 IPR036457 -
Cla09g00444 394 PANTHER PROTEIN PHOSPHATASE 2C 49-RELATED 1 373 - -
Cla09g00444 394 MobiDBLite consensus disorder prediction 59 79 - -
Cla09g00444 394 MobiDBLite consensus disorder prediction 65 79 - -
Cla09g00444 394 SMART PP2C_4 75 353 IPR001932 -
Cla09g00444 394 CDD PP2Cc 85 355 IPR001932 -
Cla09g00444 394 ProSiteProfiles PPM-type phosphatase domain profile. 85 355 IPR001932 -
Cla09g00444 394 SMART PP2C_SIG_2 100 355 IPR001932 -
Cla09g00444 394 PANTHER PROTEIN PHOSPHATASE 2C 1 373 IPR015655 GO:0004722|GO:0006470
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g00303 Cla-Chr9:2908885 Cla09g00444 Cla-Chr9:4222654 5.39E-34 dispersed
Cla09g00444 Cla-Chr9:4222654 Cla05g01655 Cla-Chr5:28135087 2.83E-40 dispersed
Cla02g01687 Cla-Chr2:31763415 Cla09g00444 Cla-Chr9:4222654 3.01E-84 transposed
Cla05g00981 Cla-Chr5:9876491 Cla09g00444 Cla-Chr9:4222654 2.45E-26 transposed
Cla07g00409 Cla-Chr7:5353131 Cla09g00444 Cla-Chr9:4222654 7.63E-37 transposed
Cla11g01835 Cla-Chr11:31986111 Cla09g00444 Cla-Chr9:4222654 2.89E-109 transposed
Cla06g00403 Cla-Chr6:4945314 Cla09g00444 Cla-Chr9:4222654 2.61E-126 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00444 K14803 - csv:101216626 713.761