Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla09g00472 | ATGATCCTCACTTTCCCGCCAAAACAACACTTCCTTTATCACTTGCCGCCAAATCCTTTGCTCTCATTCGCATCCTCAGAATCTCCATTTTCCCTCTCTCTGCTTCTCCGTCTTCTTCTTCCAATGTCAGCCATGAAAGATTCCGGGCCTCTGGACTTCAGTGCTGAAAGGGTGCTCGCAAAGGAGTTCCTAGCGAACTTTGCCGATGCAAATGGCGAAGCGAAGTACTTAAACATTTTGCAAGAGGTTGCAAATCGCAGAGTTCGTGCAATTCAGATCGATCTCGAGGATGTCTTTAATTATAAGGATTTGGACGAGGATTTCCTCAGACGTATTACAGAAAACACCCGGCGATATATTGGGATTTTTGCCGATGCTATTGATGAGCTCATGCCTGAGCCAACAGAGGCGTTTATTGATGATGATCATGACATATTAATGACACAAAGGTCTGATGATGGACCGGATACTGTTGATAACACTGACCCACGCCAAAAAATGCCTCCAGAAATCAAACGTTACTTTGAAGTTTACATTAGAGCATCTTCGAAGGGTCGCCCATTTACCATAAGAGAGGTCAAAGCATCATATATTGGTCAACTTGTGAGGATATCTGGTATTGTGACACGCTGTTCCGATGTTAAGCCATTGATGCAGGTGGCAGTTTATACATGTGAAGACTGTGGTTTTGAGATATACCAGGAGGTAACAGCTCGAGTCTTCATGCCTCTATTTGAGTGCCCATCTCAGCGTTGTAGAACAAACCAAACGAAAGGGAACTTAATCCTTCAACTTAGAGCATCTAAATTTCTGAAGTTTCAGGAGGCCAAACTTCAAGAGTTAGCTGAGCATGTTCCAAAAGGTCATATTCCCCGGACAATGACTGTTCATCTCAGGGGTGAACTAACAAGGAAGGTAGCCCCAGGTGATGTTGTTGAACTATCAGGGATTTTTCTTCCTATTCCTTATACGGGGTTCAGGGCAATGCGTGCTGGTTTGGTTGCTGATACATTCTTAGAGGCCATGTCTATCACCCATTTCAAGAAAAAATATGAGGAATATGAACTTAGGGGAGATGAAGAGGAACTAATTGCACGTTTGGCCGAGGATGGTGATATTTACAACAAACTGGCACGATCGCTGGCACCTGAAATTTTTGGTCATGAAGATATTAAAAAAGCTTTACTGCTTCTCCTTGTCGGCGCTCCTCATAGAAAGTTGAAAGATGGGATGAAGATTAGAGGAGACTTGCATATATGTTTGATGGGTGATCCTGGAGTTGCAAAGAGTCAACTTCTTAAACACATCATCAATGTTGCTCCGAGGGGAGTCTACACGACTGGTAAAGGGAGCAGTGGGGTTGGTTTAACTGCTGCTGTTCAGAAGGATCCTGTCACAAATGAGATGGTCCTTGAAGGAGGGGCATTGGTGTTAGCTGACATGGGAATATGTGCAATTGATGAATTTGACAAGATGGAAGAGTCTGATCGTACAGCAATTCATGAAGTCATGGAGCAACAGACTGTCAGCATTGCCAAGGCTGGGATCACCACATCTCTAAATGCCAGGACTGCTGTCCTTGCTGCGGCCAATCCAGCATGGGGAAGATATGACCTACGTAGAACTCCAGCTGAAAACATTAACCTTCCTCCAGCTCTATTATCAAGATTCGATCTCCTTTGGTTGATCCTAGATCGAGCTGATATGGATAATGATCTTGAAATGGCTAGACATGTTGTTTATGTCCATCAGAATAGAGAATCTCCTGCTCTTGGCTTCACCCCACTTGAATCATCTGTTCTTCGAGCTTACATTTCGGCCGCAAGAAGATTGTCTCCTTATGTTCCCAAGGATCTGGAGGAGTACATTGCCAGTGCCTATTCCAGCATTCGACAGGAAGAAGCTAAATCTAACACTCCCCATTCATACACTACAGTGAGAACTCTACTAAGCATTCTTCGGATATCAGCTGCTCTAGCAAGACTAAGATTCTCTGAGACCGTGGCTCAAAGCGATGTCGATGAGGCTCTAAGGTTAATGCAAATGTCAAAATTTTCTCTATACTCAGATGACCGTCAAAAATCTGGTCTAGATGCTATCTCAGATATTTATTCAATCTTGCGCGATGAAGCTGCCAGAACCAATAAAATGGATGTGAGCTATGCACACGCCCTGAACTGGATTTCTAGGAAGGGATACAGCGAAGCTCAACTAAAAGAATGTTTGGAGGAGTATGCAGCCTTGAATGTGTGGCAAATACATCCACACACCTTTGACATTCGGTTTATAGATGCTTGA | 2298 | 43.78 | MILTFPPKQHFLYHLPPNPLLSFASSESPFSLSLLLRLLLPMSAMKDSGPLDFSAERVLAKEFLANFADANGEAKYLNILQEVANRRVRAIQIDLEDVFNYKDLDEDFLRRITENTRRYIGIFADAIDELMPEPTEAFIDDDHDILMTQRSDDGPDTVDNTDPRQKMPPEIKRYFEVYIRASSKGRPFTIREVKASYIGQLVRISGIVTRCSDVKPLMQVAVYTCEDCGFEIYQEVTARVFMPLFECPSQRCRTNQTKGNLILQLRASKFLKFQEAKLQELAEHVPKGHIPRTMTVHLRGELTRKVAPGDVVELSGIFLPIPYTGFRAMRAGLVADTFLEAMSITHFKKKYEEYELRGDEEELIARLAEDGDIYNKLARSLAPEIFGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGKGSSGVGLTAAVQKDPVTNEMVLEGGALVLADMGICAIDEFDKMEESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDNDLEMARHVVYVHQNRESPALGFTPLESSVLRAYISAARRLSPYVPKDLEEYIASAYSSIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFSLYSDDRQKSGLDAISDIYSILRDEAARTNKMDVSYAHALNWISRKGYSEAQLKECLEEYAALNVWQIHPHTFDIRFIDA | 765 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 4509210 | 4515692 | + | ClCG09G005120.2 | Cla09g00472 | 279892 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla09g00472 | 765 | Pfam | MCM N-terminal domain | 61 | 179 | IPR027925 | - | |
| Cla09g00472 | 765 | ProSitePatterns | MCM family signature. | 482 | 490 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Cla09g00472 | 765 | Gene3D | - | 56 | 147 | - | - | |
| Cla09g00472 | 765 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM7 | 83 | 743 | IPR008050 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Cla09g00472 | 765 | Pfam | MCM AAA-lid domain | 600 | 683 | IPR041562 | - | |
| Cla09g00472 | 765 | ProSiteProfiles | MCM family domain profile. | 373 | 579 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cla09g00472 | 765 | Gene3D | - | 190 | 318 | IPR012340 | - | |
| Cla09g00472 | 765 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 383 | 694 | IPR027417 | - | |
| Cla09g00472 | 765 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 474 | 488 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cla09g00472 | 765 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 553 | 561 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cla09g00472 | 765 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 414 | 429 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cla09g00472 | 765 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 502 | 515 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cla09g00472 | 765 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 526 | 538 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cla09g00472 | 765 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 167 | 179 | IPR008050 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Cla09g00472 | 765 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 332 | 342 | IPR008050 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Cla09g00472 | 765 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 223 | 234 | IPR008050 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Cla09g00472 | 765 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 240 | 252 | IPR008050 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Cla09g00472 | 765 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 205 | 216 | IPR008050 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Cla09g00472 | 765 | SUPERFAMILY | Nucleic acid-binding proteins | 60 | 341 | IPR012340 | - | |
| Cla09g00472 | 765 | SMART | mcm | 186 | 685 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Cla09g00472 | 765 | CDD | MCM7 | 376 | 683 | IPR008050 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Cla09g00472 | 765 | Gene3D | - | 217 | 271 | - | - | |
| Cla09g00472 | 765 | Pfam | MCM P-loop domain | 361 | 583 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cla09g00472 | 765 | Pfam | MCM OB domain | 190 | 320 | IPR033762 | - | |
| Cla09g00472 | 765 | Gene3D | - | 358 | 690 | IPR027417 | - | |
| Cla09g00472 | 765 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 83 | 743 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla01g02393 | Cla-Chr1:37552694 | Cla09g00472 | Cla-Chr9:4509210 | 6.23E-105 | dispersed | |
| Cla02g00495 | Cla-Chr2:4896804 | Cla09g00472 | Cla-Chr9:4509210 | 2.43E-115 | dispersed | |
| Cla09g00472 | Cla-Chr9:4509210 | Cla10g01241 | Cla-Chr10:27181452 | 6.40E-103 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla09g00472 | K02210 | - | csv:101219064 | 1402.11 |