Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla09g00472 | ATGATCCTCACTTTCCCGCCAAAACAACACTTCCTTTATCACTTGCCGCCAAATCCTTTGCTCTCATTCGCATCCTCAGAATCTCCATTTTCCCTCTCTCTGCTTCTCCGTCTTCTTCTTCCAATGTCAGCCATGAAAGATTCCGGGCCTCTGGACTTCAGTGCTGAAAGGGTGCTCGCAAAGGAGTTCCTAGCGAACTTTGCCGATGCAAATGGCGAAGCGAAGTACTTAAACATTTTGCAAGAGGTTGCAAATCGCAGAGTTCGTGCAATTCAGATCGATCTCGAGGATGTCTTTAATTATAAGGATTTGGACGAGGATTTCCTCAGACGTATTACAGAAAACACCCGGCGATATATTGGGATTTTTGCCGATGCTATTGATGAGCTCATGCCTGAGCCAACAGAGGCGTTTATTGATGATGATCATGACATATTAATGACACAAAGGTCTGATGATGGACCGGATACTGTTGATAACACTGACCCACGCCAAAAAATGCCTCCAGAAATCAAACGTTACTTTGAAGTTTACATTAGAGCATCTTCGAAGGGTCGCCCATTTACCATAAGAGAGGTCAAAGCATCATATATTGGTCAACTTGTGAGGATATCTGGTATTGTGACACGCTGTTCCGATGTTAAGCCATTGATGCAGGTGGCAGTTTATACATGTGAAGACTGTGGTTTTGAGATATACCAGGAGGTAACAGCTCGAGTCTTCATGCCTCTATTTGAGTGCCCATCTCAGCGTTGTAGAACAAACCAAACGAAAGGGAACTTAATCCTTCAACTTAGAGCATCTAAATTTCTGAAGTTTCAGGAGGCCAAACTTCAAGAGTTAGCTGAGCATGTTCCAAAAGGTCATATTCCCCGGACAATGACTGTTCATCTCAGGGGTGAACTAACAAGGAAGGTAGCCCCAGGTGATGTTGTTGAACTATCAGGGATTTTTCTTCCTATTCCTTATACGGGGTTCAGGGCAATGCGTGCTGGTTTGGTTGCTGATACATTCTTAGAGGCCATGTCTATCACCCATTTCAAGAAAAAATATGAGGAATATGAACTTAGGGGAGATGAAGAGGAACTAATTGCACGTTTGGCCGAGGATGGTGATATTTACAACAAACTGGCACGATCGCTGGCACCTGAAATTTTTGGTCATGAAGATATTAAAAAAGCTTTACTGCTTCTCCTTGTCGGCGCTCCTCATAGAAAGTTGAAAGATGGGATGAAGATTAGAGGAGACTTGCATATATGTTTGATGGGTGATCCTGGAGTTGCAAAGAGTCAACTTCTTAAACACATCATCAATGTTGCTCCGAGGGGAGTCTACACGACTGGTAAAGGGAGCAGTGGGGTTGGTTTAACTGCTGCTGTTCAGAAGGATCCTGTCACAAATGAGATGGTCCTTGAAGGAGGGGCATTGGTGTTAGCTGACATGGGAATATGTGCAATTGATGAATTTGACAAGATGGAAGAGTCTGATCGTACAGCAATTCATGAAGTCATGGAGCAACAGACTGTCAGCATTGCCAAGGCTGGGATCACCACATCTCTAAATGCCAGGACTGCTGTCCTTGCTGCGGCCAATCCAGCATGGGGAAGATATGACCTACGTAGAACTCCAGCTGAAAACATTAACCTTCCTCCAGCTCTATTATCAAGATTCGATCTCCTTTGGTTGATCCTAGATCGAGCTGATATGGATAATGATCTTGAAATGGCTAGACATGTTGTTTATGTCCATCAGAATAGAGAATCTCCTGCTCTTGGCTTCACCCCACTTGAATCATCTGTTCTTCGAGCTTACATTTCGGCCGCAAGAAGATTGTCTCCTTATGTTCCCAAGGATCTGGAGGAGTACATTGCCAGTGCCTATTCCAGCATTCGACAGGAAGAAGCTAAATCTAACACTCCCCATTCATACACTACAGTGAGAACTCTACTAAGCATTCTTCGGATATCAGCTGCTCTAGCAAGACTAAGATTCTCTGAGACCGTGGCTCAAAGCGATGTCGATGAGGCTCTAAGGTTAATGCAAATGTCAAAATTTTCTCTATACTCAGATGACCGTCAAAAATCTGGTCTAGATGCTATCTCAGATATTTATTCAATCTTGCGCGATGAAGCTGCCAGAACCAATAAAATGGATGTGAGCTATGCACACGCCCTGAACTGGATTTCTAGGAAGGGATACAGCGAAGCTCAACTAAAAGAATGTTTGGAGGAGTATGCAGCCTTGAATGTGTGGCAAATACATCCACACACCTTTGACATTCGGTTTATAGATGCTTGA | 2298 | 43.78 | MILTFPPKQHFLYHLPPNPLLSFASSESPFSLSLLLRLLLPMSAMKDSGPLDFSAERVLAKEFLANFADANGEAKYLNILQEVANRRVRAIQIDLEDVFNYKDLDEDFLRRITENTRRYIGIFADAIDELMPEPTEAFIDDDHDILMTQRSDDGPDTVDNTDPRQKMPPEIKRYFEVYIRASSKGRPFTIREVKASYIGQLVRISGIVTRCSDVKPLMQVAVYTCEDCGFEIYQEVTARVFMPLFECPSQRCRTNQTKGNLILQLRASKFLKFQEAKLQELAEHVPKGHIPRTMTVHLRGELTRKVAPGDVVELSGIFLPIPYTGFRAMRAGLVADTFLEAMSITHFKKKYEEYELRGDEEELIARLAEDGDIYNKLARSLAPEIFGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGKGSSGVGLTAAVQKDPVTNEMVLEGGALVLADMGICAIDEFDKMEESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDNDLEMARHVVYVHQNRESPALGFTPLESSVLRAYISAARRLSPYVPKDLEEYIASAYSSIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFSLYSDDRQKSGLDAISDIYSILRDEAARTNKMDVSYAHALNWISRKGYSEAQLKECLEEYAALNVWQIHPHTFDIRFIDA | 765 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 4509210 | 4515692 | + | ClCG09G005120.2 | Cla09g00472 | 279892 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla09g00472 | 765 | Pfam | MCM N-terminal domain | 61 | 179 | IPR027925 | - | |
| Cla09g00472 | 765 | ProSitePatterns | MCM family signature. | 482 | 490 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Cla09g00472 | 765 | Gene3D | - | 56 | 147 | - | - | |
| Cla09g00472 | 765 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM7 | 83 | 743 | IPR008050 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Cla09g00472 | 765 | Pfam | MCM AAA-lid domain | 600 | 683 | IPR041562 | - | |
| Cla09g00472 | 765 | ProSiteProfiles | MCM family domain profile. | 373 | 579 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cla09g00472 | 765 | Gene3D | - | 190 | 318 | IPR012340 | - | |
| Cla09g00472 | 765 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 383 | 694 | IPR027417 | - | |
| Cla09g00472 | 765 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 474 | 488 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cla09g00472 | 765 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 553 | 561 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cla09g00472 | 765 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 414 | 429 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cla09g00472 | 765 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 502 | 515 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cla09g00472 | 765 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 526 | 538 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cla09g00472 | 765 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 167 | 179 | IPR008050 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Cla09g00472 | 765 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 332 | 342 | IPR008050 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Cla09g00472 | 765 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 223 | 234 | IPR008050 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Cla09g00472 | 765 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 240 | 252 | IPR008050 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Cla09g00472 | 765 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 205 | 216 | IPR008050 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Cla09g00472 | 765 | SUPERFAMILY | Nucleic acid-binding proteins | 60 | 341 | IPR012340 | - | |
| Cla09g00472 | 765 | SMART | mcm | 186 | 685 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Cla09g00472 | 765 | CDD | MCM7 | 376 | 683 | IPR008050 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Cla09g00472 | 765 | Gene3D | - | 217 | 271 | - | - | |
| Cla09g00472 | 765 | Pfam | MCM P-loop domain | 361 | 583 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cla09g00472 | 765 | Pfam | MCM OB domain | 190 | 320 | IPR033762 | - | |
| Cla09g00472 | 765 | Gene3D | - | 358 | 690 | IPR027417 | - | |
| Cla09g00472 | 765 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 83 | 743 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla09g00472 | K02210 | MCM7, CDC47; DNA replication licensing factor MCM7 [EC:5.6.2.3] | - | csv:101219064 | 1402.11 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla01g02393 | Cla-Chr1:37552694 | Cla09g00472 | Cla-Chr9:4509210 | 6.23E-105 | dispersed | |
| Cla02g00495 | Cla-Chr2:4896804 | Cla09g00472 | Cla-Chr9:4509210 | 2.43E-115 | dispersed | |
| Cla09g00472 | Cla-Chr9:4509210 | Cla10g01241 | Cla-Chr10:27181452 | 6.40E-103 | dispersed |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi7g390 | . | Blo06g00534 | . | Bda10g00656 | . | . | Bma10g01097 | . | . | Cmo17g01008 | . | . | . | . | . | . | . | Bhi09g00842 | . | . | . | . | . | . | Cla09g00472 | Cam09g0512 | Cec09g0509 | Cco09g0502 | Clacu09g0515 | . | Cre09g0492 | . | . | . | . | Lsi02g02475 | Csa07g01905 | . | Cme01g02199 | . | . | . | . | Bpe10g00498 | . | . | Bma15g00493 | . | . | . | . | Cma17g01031 | . | Car17g00984 | . | Cpe12g00890 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Chy01g01752 | . |
Syn-Families
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Cla08g00013 | . | 1 | 94 | Core DNA Replication Machinery Family | AT4G14700 | 75.5 | 1.5e-37 | 155.2 | |
| Cla08g00013 | . | 1 | 94 | Core DNA Replication Machinery Family | AT4G12620 | 78.7 | 2.4e-38 | 157.9 | |
| Cla08g01551 | . | 2 | 390 | Core DNA Replication Machinery Family | AT2G37560 | 60.7 | 1.9e-138 | 489.2 | |
| Cla07g00440 | . | 9 | 451 | Core DNA Replication Machinery Family | AT2G01120 | 55.2 | 2.0e-129 | 459.5 | |
| Cla06g00340 | . | 89 | 622 | Core DNA Replication Machinery Family | AT4G29910 | 58.2 | 9.2e-175 | 610.5 | |
| Cla11g00892 | . | 1 | 283 | Core DNA Replication Machinery Family | AT1G26840 | 66.1 | 4.0e-94 | 341.7 | |
| Cla09g02206 | . | 68 | 839 | Core DNA Replication Machinery Family | AT1G79150 | 57.7 | 1.4e-235 | 813.1 | |
| Cla10g01241 | . | 8 | 946 | Core DNA Replication Machinery Family | AT1G44900 | 75.0 | 0.0e+00 | 1346.6 | |
| Cla01g02393 | . | 83 | 595 | Core DNA Replication Machinery Family | AT5G46280 | 84.1 | 1.5e-249 | 859.0 | |
| Cla02g00495 | . | 1 | 845 | Core DNA Replication Machinery Family | AT2G16440 | 76.2 | 0.0e+00 | 1153.7 | |
| Cla11g00330 | . | 963 | 1697 | Core DNA Replication Machinery Family | AT2G07690 | 78.4 | 0.0e+00 | 1112.4 | |
| Cla01g02533 | . | 7 | 869 | Core DNA Replication Machinery Family | AT5G44635 | 65.0 | 0.0e+00 | 1080.1 | |
| Cla09g00472 | . | 45 | 763 | Core DNA Replication Machinery Family | AT4G02060 | 85.3 | 0.0e+00 | 1219.9 | |
| Cla02g01918 | . | 55 | 521 | Core DNA Replication Machinery Family | AT2G29680 | 61.9 | 5.6e-163 | 571.2 | |
| Cla02g01918 | . | 37 | 482 | Core DNA Replication Machinery Family | AT1G07270 | 58.8 | 2.7e-143 | 505.8 | |
| Cla09g00820 | . | 323 | 915 | Core DNA Replication Machinery Family | AT3G25100 | 76.2 | 1.2e-257 | 885.9 | |
| Cla10g01954 | . | 12 | 826 | Core DNA Replication Machinery Family | AT3G09660 | 69.0 | 2.4e-309 | 1058.1 | |
| Cla09g01540 | . | 9 | 635 | Core DNA Replication Machinery Family | AT2G14050 | 79.5 | 4.4e-290 | 993.8 | |
| Cla09g01539 | . | 19 | 120 | Core DNA Replication Machinery Family | AT2G14050 | 74.5 | 2.6e-40 | 164.1 | |
| Cla02g01165 | . | 1909 | 2314 | Core DNA Replication Machinery Family | AT2G20980 | 51.4 | 6.2e-101 | 364.8 | |
| Cla09g00243 | CCT,ECH | 1 | 192 | Core DNA Replication Machinery Family | AT1G80190 | 67.5 | 1.1e-72 | 270.0 | |
| Cla11g00591 | . | 1 | 184 | Core DNA Replication Machinery Family | AT1G19080 | 68.5 | 2.0e-70 | 262.3 | |
| Cla11g00591 | . | 1 | 184 | Core DNA Replication Machinery Family | AT3G55490 | 68.5 | 2.0e-70 | 262.3 | |
| Cla05g00156 | . | 15 | 164 | Core DNA Replication Machinery Family | AT5G49010 | 65.3 | 1.6e-49 | 193.0 | |
| Cla02g01214 | . | 1 | 1546 | Core DNA Replication Machinery Family | AT5G67100 | 60.7 | 0.0e+00 | 1769.2 | |
| Cla04g01144 | . | 99 | 694 | Core DNA Replication Machinery Family | AT1G67630 | 54.7 | 5.5e-189 | 657.9 | |
| Cla06g00192 | . | 363 | 763 | Core DNA Replication Machinery Family | AT1G67320 | 65.3 | 3.5e-170 | 595.1 | |
| Cla08g00153 | . | 7 | 430 | Core DNA Replication Machinery Family | AT5G41880 | 65.5 | 1.6e-169 | 592.8 | |
| Cla01g01486 | . | 1 | 1033 | Core DNA Replication Machinery Family | AT5G63960 | 78.5 | 0.0e+00 | 1643.6 | |
| Cla10g01668 | . | 29 | 575 | Core DNA Replication Machinery Family | AT2G42120 | 60.5 | 4.1e-186 | 647.9 | |
| Cla06g00192 | . | 363 | 763 | Core DNA Replication Machinery Family | AT1G67320 | 65.3 | 3.5e-170 | 595.1 | |
| Cla01g00535 | . | 1 | 127 | Core DNA Replication Machinery Family | AT1G09815 | 60.8 | 3.4e-37 | 151.4 | |
| Cla02g02143 | . | 1 | 2095 | Core DNA Replication Machinery Family | AT1G08260 | 71.5 | 0.0e+00 | 2981.8 | |
| Cla09g02001 | . | 1 | 1737 | Core DNA Replication Machinery Family | AT1G08260 | 66.5 | 0.0e+00 | 2332.4 | |
| Cla02g02143 | . | 25 | 2202 | Core DNA Replication Machinery Family | AT2G27120 | 68.1 | 0.0e+00 | 2948.3 | |
| Cla09g02001 | . | 1 | 1844 | Core DNA Replication Machinery Family | AT2G27120 | 64.0 | 0.0e+00 | 2351.2 | |
| Cla04g01237 | . | 530 | 980 | Core DNA Replication Machinery Family | AT5G22110 | 69.8 | 1.1e-182 | 636.7 | |
| Cla02g02185 | . | 228 | 973 | Core DNA Replication Machinery Family | AT5G22010 | 72.2 | 1.6e-301 | 1032.3 | |
| Cla10g00332 | . | 1 | 203 | Core DNA Replication Machinery Family | AT1G63160 | 91.6 | 2.0e-105 | 379.4 | |
| Cla04g00481 | . | 73 | 444 | Core DNA Replication Machinery Family | AT5G27740 | 76.3 | 1.1e-162 | 569.7 | |
| Cla11g01553 | . | 1 | 334 | Core DNA Replication Machinery Family | AT1G21690 | 82.1 | 4.5e-153 | 537.7 | |
| Cla08g00608 | . | 1 | 412 | Core DNA Replication Machinery Family | AT1G77470 | 66.4 | 5.3e-147 | 517.7 | |
| Cla11g00142 | . | 26 | 587 | Core DNA Replication Machinery Family | AT2G06510 | 67.7 | 8.4e-238 | 820.1 | |
| Cla10g00108 | . | 32 | 703 | Core DNA Replication Machinery Family | AT2G06510 | 50.4 | 1.0e-195 | 680.2 | |
| Cla06g01537 | . | 1 | 643 | Core DNA Replication Machinery Family | AT5G08020 | 66.1 | 4.1e-245 | 844.3 | |
| Cla10g00108 | . | 10 | 811 | Core DNA Replication Machinery Family | AT5G45400 | 50.3 | 1.8e-227 | 786.2 | |
| Cla06g01537 | . | 1 | 638 | Core DNA Replication Machinery Family | AT5G61000 | 64.0 | 3.2e-237 | 818.1 | |
| Cla10g00108 | . | 5 | 797 | Core DNA Replication Machinery Family | AT4G19130 | 53.7 | 3.0e-224 | 775.4 | |
| Cla03g01715 | . | 1 | 386 | Core DNA Replication Machinery Family | AT5G26680 | 78.5 | 4.7e-176 | 614.4 | |
| Cla07g01491 | . | 1 | 328 | Core DNA Replication Machinery Family | AT2G25100 | 60.7 | 1.0e-110 | 396.7 | |
| Cla02g02101 | . | 44 | 890 | Core DNA Replication Machinery Family | AT1G08130 | 62.1 | 7.1e-282 | 966.8 | |
| Cla02g02101 | . | 204 | 890 | Core DNA Replication Machinery Family | AT1G49250 | 60.3 | 9.2e-227 | 783.5 |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0009694 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 33 |
Transcriptome
| Select | Gene | Chr | Type | da1 | da2 | da3 | da4 | da5 | da6 | da7 | da8 | da9 | da10 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Cla09g00472 | Cla_Chr09 | FPKM | 151.840179 | 174.086029 | 84.904236 | 77.984749 | 89.045959 | 107.425362 | 83.377083 | 84.524849 | 83.966454 | 82.531609 |