Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla09g00505 | ATGGCGACGAGGAATCGAACTGCACAGTTTAAAAGGCACAGGGACGCCGTGAAGAGCGTCCGTGCACCTTTATCTTCTTCGGCAGCTGGTTCGAGCGGGCCGGTTATTGAGATGGTGAGTTCGTCTCTTCTTCGTTCAAAGCGTTCTTCTTCGTATGCTCCTCTTAGCACTGAAGATCCAGGACCTTCGAGTTTGCTTTGTGTTCCACATCTGAGTACACTGTTGATTTCTGGTGTCTCCACAACTAGTTTTAGTTTTAGGAAACTTATAATGGATCTGCTTAGAATCCGAATGTTTCTGTCTGACAGTGATGCATTTATGGTGGGTCTACCTCCAGCTTGGGTGGATGATTCCGAAGAAATAACTGTTAATATACAGAAAATTCGTAGGAAAATGGCAGAGTTAGTCAAAGCTCATTCTAAAGCTTTAATGCCTTCTTTTGCTGATGGCAAAGAAGATGAGCATACGATTGAGGCACTTACACTAGAGATTACCAATCTTTTGAAAACTTCCGAGAAGAGGTTGAAGAAAATTTCTAGTAATGGGTCCTCAGAGGATATTAACATCAGAAGAAATGTCCAGCGTTCTCTTGCTACAGAGCTTCAGAATCTTTCGATGGACCTTCGTAGAAGACAGTCAATGTATCTGAAACGTCTGCAGCAGCAAAAGGAGGGACACGATGGAATTGATTTGGAGATAAATTTGAATGGAAACAGAACTCTCCAGGAGGATGATGGATATGATGAATTTGGAGCCAATGAAAACCAAACGATGACATTAGATGGGCAGCACATTCAGGGAAGGGAGAAAGAGATTAAACAGGTTGTGAAATCGGTAAATGAGCTCGCCCAAATTATGAAGGATCTCTCAACCCTTGTTATAGACCAGGGTACCATTGTCGATAGAATTGACCACAATATTCAGAATGTTGCTGCTTCAGTTGAAGAGGGCTTTAAACAGCTTCAGAAGGCAGAGAAGAGTCAGAAGGATGGAGGAATGGTGAAATGTGCAACAGTGCTTGTTATTATGTGTTTCATAATGTTGGTTCTGTTGATACTGAAGGAGATAATTATGTAA | 1077 | 41.97 | MATRNRTAQFKRHRDAVKSVRAPLSSSAAGSSGPVIEMVSSSLLRSKRSSSYAPLSTEDPGPSSLLCVPHLSTLLISGVSTTSFSFRKLIMDLLRIRMFLSDSDAFMVGLPPAWVDDSEEITVNIQKIRRKMAELVKAHSKALMPSFADGKEDEHTIEALTLEITNLLKTSEKRLKKISSNGSSEDINIRRNVQRSLATELQNLSMDLRRRQSMYLKRLQQQKEGHDGIDLEINLNGNRTLQEDDGYDEFGANENQTMTLDGQHIQGREKEIKQVVKSVNELAQIMKDLSTLVIDQGTIVDRIDHNIQNVAASVEEGFKQLQKAEKSQKDGGMVKCATVLVIMCFIMLVLLILKEIIM | 358 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 4769104 | 4773177 | - | ClCG09G005420.2 | Cla09g00505 | 279925 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla09g00505 | 358 | SMART | SynN_4 | 105 | 220 | IPR006011 | GO:0016020 | |
| Cla09g00505 | 358 | CDD | SNARE_syntaxin16 | 265 | 323 | - | - | |
| Cla09g00505 | 358 | SUPERFAMILY | t-snare proteins | 110 | 317 | IPR010989 | GO:0016020|GO:0016192 | |
| Cla09g00505 | 358 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 262 | 324 | IPR000727 | - | |
| Cla09g00505 | 358 | PANTHER | SYNTAXIN OF PLANTS PROTEIN | 104 | 353 | - | - | |
| Cla09g00505 | 358 | Pfam | SNARE domain | 298 | 350 | IPR000727 | - | |
| Cla09g00505 | 358 | PANTHER | SYNTAXIN OF PLANTS PROTEIN | 1 | 62 | - | - | |
| Cla09g00505 | 358 | PANTHER | SYNTAXIN | 1 | 62 | IPR045242 | - | |
| Cla09g00505 | 358 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
| Cla09g00505 | 358 | ProSitePatterns | Syntaxin / epimorphin family signature. | 268 | 307 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Cla09g00505 | 358 | Gene3D | - | 111 | 316 | - | - | |
| Cla09g00505 | 358 | SMART | tSNARE_6 | 256 | 324 | IPR000727 | - | |
| Cla09g00505 | 358 | PANTHER | SYNTAXIN | 104 | 353 | IPR045242 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla02g01497 | Cla-Chr2:29482666 | Cla09g00505 | Cla-Chr9:4769104 | 1.41E-132 | dispersed | |
| Cla08g01285 | Cla-Chr8:25743861 | Cla09g00505 | Cla-Chr9:4769104 | 7.06E-07 | dispersed | |
| Cla09g00505 | Cla-Chr9:4769104 | Cla10g00138 | Cla-Chr10:1458241 | 5.20E-06 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla09g00505 | K08489 | - | csv:101204192 | 562.377 |