Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00508 ATGGCTACCGATTCTCATGCCCCTACTCCAAGAGGTCTTCTCTGTAATGCTGGGGCTGGTGCTGCTGCTGGTATTTCCATCTCTTTCTCTCCGTTTACGGTTTCTCTGTGTTGTCGATTGAGTTTAAATTTGTGGGATTTCAAACTGAAAGATTTTGCTTCAGATTTATATCTGTTTGTTGCGCTTGTTTGGATGATTGAGAAGAGAGGAGTGAGGGGAGTTCTTGCTGCTACGTTTGTTTGCCCTTTGGATGTTATCAAGACGAGATTTCAGGTTCATGGATTGCCAAACATCGGTAAAGGGAGTCTTATAGTTGGTAGTCTGCAACAAATTTTTCATAAGGAGGGGTTACGTGGAATGTATAGAGGTCTCGCACCTACTGTGCTTGCATTACTTCCTAACTGGGCTGTTTACTTCACAATATATGGGCAGCTTAAAAGCTTTCTTGGCTCTGATGGTGAAAATCGTCAGCTTTCAATAGGTGCTAATATGATGGCTGCTTCTGGTGCCGGGGCTGCTACAACTATTGCAACCAATCCTCTATGGGTAGTTAAGACCAGGCTACAGACACAGGGAATGAAATCTGGTGTGCTACCATATAGAAATACAGTGTCTGCCTTGAGGAGAATAGCCTCTGAAGAAGGCATTCGTGGATTGTACAGTGGGCTTGTACCTGCTTTGGCTGGTGTAAGTCACGTTGCGATCCAGTTTCCAACATATGAAAAAATAAAAAGTTATTTGGCTAGAAGAGACAATACGACAACGGACAAACTCACTGCACGCGATGTTGCGGTCGCCTCCTCTGTCTCCAAGATATTTGCTTCTACATTGACCTATCCACACGAGATCAAAATCCTTGACATTCTAAAAGGTCATTACTTAGGGTTTGGTATTCATAACATTTCAGTCTCATTGAGACAAACTCAACTGGTTGTACGATCCAGGCTTCAGGAACAAGGGTTTCACTCTGAGAAGCGTTATTCTGGGGTAGCCGATTGCGTAAAGAAAGTATTTCAACAAGATGGTCTCCCTGGTTTCTATAGAGGGTACACTAATTGCCCCCCAGTAGTTTGTAGCAGCAACTCAAAACATTCTTGCCACAGTAAAGCTTCAATGTTATCAAGCCTGCCTTTAAAACATGATGACGACGACAATGAAAATGACAATAATAGATACACTGAACCCTCTGGAACCTTCTTCGTATTCTTCCTCTGTTTTAAACCCACGTCGCATCGCATCCATGCAATTTCCTTGCCCTTCACAATAAACATTATTATTCCAGAGTTTTTCCGGCGAAACAAAACAATGTCGGGTGGTGGGTTTTGTTATTATTCTGTTCTTGGCCTGTGTAAGCAAGCTTCTGCCGATGAAATCCGATCAGCTTACCGTAAACTAGCCATGAAATGGCATCCCGATAAGTGGATCAAACATCCAGAAATGGCCGCTGAATCTAAAACCCGCTTTCAGCAAATTCAACAAGCTTATTCAGTTCTATCAAACAAGGGAAAGAGAAGCATATACGATGCCGGATTGATTTCATTTTTGACAGACGATGATGACGAAGGATTTTGTGATTTCATGATCGAAATGGTATCAATGATGAAGAGCGCCACACAGCAGGGGAAGAAGAAGAAGAAGATGAAGAACAGTTTGGAGGATCTAAGAGGAACATTAATGGAGATGATGGGAGCCGATGATGAACAAGCTGAGGAATTAGGGCTCGGCTGGGGATCTTCTTCTCCTCCTCCTCCTCTTAATGCCAAAAAAAGAAGTCGATTTCCTTAG 1785 42.91 MATDSHAPTPRGLLCNAGAGAAAGISISFSPFTVSLCCRLSLNLWDFKLKDFASDLYLFVALVWMIEKRGVRGVLAATFVCPLDVIKTRFQVHGLPNIGKGSLIVGSLQQIFHKEGLRGMYRGLAPTVLALLPNWAVYFTIYGQLKSFLGSDGENRQLSIGANMMAASGAGAATTIATNPLWVVKTRLQTQGMKSGVLPYRNTVSALRRIASEEGIRGLYSGLVPALAGVSHVAIQFPTYEKIKSYLARRDNTTTDKLTARDVAVASSVSKIFASTLTYPHEIKILDILKGHYLGFGIHNISVSLRQTQLVVRSRLQEQGFHSEKRYSGVADCVKKVFQQDGLPGFYRGYTNCPPVVCSSNSKHSCHSKASMLSSLPLKHDDDDNENDNNRYTEPSGTFFVFFLCFKPTSHRIHAISLPFTINIIIPEFFRRNKTMSGGGFCYYSVLGLCKQASADEIRSAYRKLAMKWHPDKWIKHPEMAAESKTRFQQIQQAYSVLSNKGKRSIYDAGLISFLTDDDDEGFCDFMIEMVSMMKSATQQGKKKKKMKNSLEDLRGTLMEMMGADDEQAEELGLGWGSSSPPPPLNAKKRSRFP 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4790154 4797949 + ClCG09G005470.2 Cla09g00508 279928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00508 594 PRINTS DnaJ domain signature 483 503 IPR001623 -
Cla09g00508 594 PRINTS DnaJ domain signature 444 462 IPR001623 -
Cla09g00508 594 PRINTS DnaJ domain signature 462 477 IPR001623 -
Cla09g00508 594 SUPERFAMILY Chaperone J-domain 438 507 IPR036869 -
Cla09g00508 594 ProSiteProfiles Solute carrier (Solcar) repeat profile. 286 373 IPR018108 -
Cla09g00508 594 ProSitePatterns Nt-dnaJ domain signature. 488 507 IPR018253 -
Cla09g00508 594 CDD DnaJ 442 500 IPR001623 -
Cla09g00508 594 ProSiteProfiles Solute carrier (Solcar) repeat profile. 158 246 IPR018108 -
Cla09g00508 594 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 308 350 IPR044712 GO:0006862|GO:0055085
Cla09g00508 594 Pfam DnaJ domain 443 508 IPR001623 -
Cla09g00508 594 PANTHER NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1, CHLOROPLASTIC 308 350 - -
Cla09g00508 594 PANTHER NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1, CHLOROPLASTIC 72 283 - -
Cla09g00508 594 Gene3D DnaJ domain 431 527 IPR036869 -
Cla09g00508 594 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 72 283 IPR044712 GO:0006862|GO:0055085
Cla09g00508 594 ProSiteProfiles Solute carrier (Solcar) repeat profile. 60 148 IPR018108 -
Cla09g00508 594 SMART dnaj_3 441 503 IPR001623 -
Cla09g00508 594 ProSiteProfiles dnaJ domain profile. 442 511 IPR001623 -
Cla09g00508 594 Pfam Mitochondrial carrier protein 157 249 IPR018108 -
Cla09g00508 594 Pfam Mitochondrial carrier protein 311 351 IPR018108 -
Cla09g00508 594 Pfam Mitochondrial carrier protein 71 150 IPR018108 -
Cla09g00508 594 SUPERFAMILY Mitochondrial carrier 70 351 IPR023395 -
Cla09g00508 594 MobiDBLite consensus disorder prediction 569 594 - -
Cla09g00508 594 Gene3D Mitochondrial carrier domain 68 357 IPR023395 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00571 Cla-Chr1:6431391 Cla09g00508 Cla-Chr9:4790154 5.83E-13 dispersed
Cla01g01945 Cla-Chr1:34117062 Cla09g00508 Cla-Chr9:4790154 1.46E-08 dispersed
Cla02g01495 Cla-Chr2:29465391 Cla09g00508 Cla-Chr9:4790154 1.98E-39 dispersed
Cla06g01543 Cla-Chr6:29014429 Cla09g00508 Cla-Chr9:4790154 7.02E-14 dispersed
Cla09g00112 Cla-Chr9:1144075 Cla09g00508 Cla-Chr9:4790154 3.61E-23 dispersed
Cla09g00508 Cla-Chr9:4790154 Cla06g00488 Cla-Chr6:5907481 8.02E-06 dispersed
Cla09g00508 Cla-Chr9:4790154 Cla09g01135 Cla-Chr9:12705302 1.57E-13 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00508 K15115 - csv:101204681 464.151