Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00511 ATGGCTGCCAGAACAACCACCGCCGCCGCCTTCTACTTTCTCATCCTCATTTCCCTTTACATTTCCACTTCCGCCGCCCCCACCGGTTCAGTATGCAGCTCGACTCGAGACCCATCCTACTGCAAATCGGTTCTCCCGAATCAAACCGGCAATGTCTACTCGTACGGACGGTCGTCGTTCAGAAAGTCACTGTCGTCGTCGCAGAAATTCCTCCGGCTGGTGGAGAAATACCTCAGGTCCCGATCGTCGCTGACAGTGCCGGCGGTGAGGGCGCTGGAGGACTGCCAGCTGCTGGCGGGACTGAACATTGATTACTTAACGACGTCGTTCCGGGCGGTGAACTCGACGAGCAGAACGTTGCCGGAGATGAAGGCGGACGACGTGCAGAGTCTGCTGAGTGCGATATTGACGAATCAACAGACTTGTTTGGATGGAATTAAGGCGACGGCGGGTTCTTGGTCGCTCAAAAATGGCCTTTCTCTCCCACTTGCTGCTGACACCAAGCTCTACTCTCTGTCCTTGGCCTTCTTTACCAAAGGTTGGGTTCCAAAGAAGAAGAAAAAACCGACATGGAAAGCCGCCGGAAGACAAGGGGGGTTCAGAAATGGGCGAATGTCACTCAAAATGTCCAGCCGAACCAAAGCGATCTACGAGACGGCGACCCGCCGGAATCTGTTGCAGATCGATGACGGCGGCGACGACCAGATTGCGGTCAGGGACATCGTCGTTGTCAGTCAAGACGGCAGCGGAAATTTCACCACCATCAATGAGGCGATTGCGGCGGCGCCGAACAACTCTGCTCCGTCCGACGGGTATTTCTTAATCTTCGTGTCGGCCGGAATTTATGAAGAATATGTGTCGATTGCGAAGAACAAGAGGTACTTGATGATGATCGGAGATGGCATTAATCAGACCGTCGTCACCGGTAATCGGAGTGTCGTTGACGGCTGGACCACCTTCAATTCCGCCACGTTTGCGGTGGTCGGACCTGGATTCGTAGCAGTAAACATGACATTCAGAAACACCGCCGGCGCCATAAAGCATCAAGCCGTAGCCGTCCGGAATGGCGCCGACTTATCAACATTCTACCTCTGCAGCTTCGAAGCCTACCAAGACACCTTATACACCCATTCCCTCCGCCAATTCTACCGCGACTGCGACATCTACGGCACCGTCGACTTCATCTTCGGCAACGCCGCCGTCGTCTTCCAGAACTGCAACATTTACCCACGCCTCCCGATGTCCAACCAGTTCAACGCCATCACCGCCCAGGGCCGGACCGACCCAAATCAGAACACCGGCACCTCCATCTACAACTGCCGAATCACGGCAGCCGACGATCTGGCCAACAACAGCGGCGCCGGCGTCAAGACGTTCCTAGGGCGGCCGTGGAAGGAATACTCAAGGACGGTTTATATGCAGAGCTTTATGGATGATTTGATTGATCCGGAGGGATGGAGGGCTTGGAATGGGGATTTTGCTTTGAACACTTCGTATTATGCTGAATTTGGGAATTTTGGGCCGGGATCTAACACATCGGAGAGGGTTAATTGGCCGGGATTTCATTTGATTAATGATACCGATGCTGGCAATTTCACGGCGGGGAATTTTGTGTTGGCCGACGATTGGCTGCCGCAGACCGGCGTTCCCTATACCAGCGGCCTCACGGACTAG 1674 54.42 MAARTTTAAAFYFLILISLYISTSAAPTGSVCSSTRDPSYCKSVLPNQTGNVYSYGRSSFRKSLSSSQKFLRLVEKYLRSRSSLTVPAVRALEDCQLLAGLNIDYLTTSFRAVNSTSRTLPEMKADDVQSLLSAILTNQQTCLDGIKATAGSWSLKNGLSLPLAADTKLYSLSLAFFTKGWVPKKKKKPTWKAAGRQGGFRNGRMSLKMSSRTKAIYETATRRNLLQIDDGGDDQIAVRDIVVVSQDGSGNFTTINEAIAAAPNNSAPSDGYFLIFVSAGIYEEYVSIAKNKRYLMMIGDGINQTVVTGNRSVVDGWTTFNSATFAVVGPGFVAVNMTFRNTAGAIKHQAVAVRNGADLSTFYLCSFEAYQDTLYTHSLRQFYRDCDIYGTVDFIFGNAAVVFQNCNIYPRLPMSNQFNAITAQGRTDPNQNTGTSIYNCRITAADDLANNSGAGVKTFLGRPWKEYSRTVYMQSFMDDLIDPEGWRAWNGDFALNTSYYAEFGNFGPGSNTSERVNWPGFHLINDTDAGNFTAGNFVLADDWLPQTGVPYTSGLTD 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4824313 4828106 - ClCG09G005510.1 Cla09g00511 279931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00511 557 PANTHER PECTINESTERASE 13 555 - -
Cla09g00511 557 CDD PMEI-like_3 30 178 - -
Cla09g00511 557 Pfam Plant invertase/pectin methylesterase inhibitor 30 175 IPR006501 GO:0004857
Cla09g00511 557 SMART PMEI_2 22 176 IPR006501 GO:0004857
Cla09g00511 557 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 7-RELATED 13 555 - -
Cla09g00511 557 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 179 IPR035513 -
Cla09g00511 557 Pfam Pectinesterase 242 539 IPR000070 GO:0030599|GO:0042545
Cla09g00511 557 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 179 IPR035513 -
Cla09g00511 557 SUPERFAMILY Pectin lyase-like 237 554 IPR011050 -
Cla09g00511 557 Gene3D - 236 555 IPR012334 -
Cla09g00511 557 ProSitePatterns Pectinesterase signature 2. 388 397 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00112 Cla-Chr2:1297247 Cla09g00511 Cla-Chr9:4824313 0 dispersed
Cla05g02243 Cla-Chr5:34086014 Cla09g00511 Cla-Chr9:4824313 2.50E-18 dispersed
Cla09g00511 Cla-Chr9:4824313 Cla01g02159 Cla-Chr1:35741531 6.00E-129 dispersed
Cla11g01417 Cla-Chr11:27735606 Cla09g00511 Cla-Chr9:4824313 2.90E-48 dispersed
Cla09g00511 Cla-Chr9:4824313 Cla09g00512 Cla-Chr9:4846710 1.21E-137 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00511 K01051 - csv:101205321 1006.51