Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00512 ATGTTTGGCCTCAAAAACAGAGCTCAAATCCCTTCAAATCCCACCTCCATTTCCACCATTTCTACATTCTTCTTCATTTTCTTCCTCTTCTCCTTCAAACCCATTTCTTCAAATCCCCAAATCCACCAAACCGCTCGATCCCTTTGCAATGGCACTCTGTTTCCAAACCTCTGTTTCTCAAAGCTCTCTTCTTTTCCCCAATTGGCTTCCCTCTCGCCGCAAAAGCTCGCCGGCAGCGCCCTCAACTTCACTGCCCGCGAGGTCCTCGATGCCTACGCCAATTGCACCAAGCTCAAGACTCACCTTTACTGTGGCCTGAATCCCACCGACCGTCGGGCCCTCGATGACTGTCTTGAGCTTCTCGACGGCAGCATTGCCGAGCTCAAAGCTTCGATCTGCGATCTAGCGCCGCCGCAGTCCGCTGCCCGTCACTCCCATGATCTGTTGACATTGGTCAGCGCCGCCATGACTAACCACCGGACTTGTGTTGATGGGTTTTATAATAGTTCTGGGACTGTGAGGAGACGGGTGGAGCAGTATTTGGGGAAAATTGGACAGCATTTAAGTATTGATTTGGCGATGTTGAAGAAAATCCCTGGAGTTAATAGGGGTGCGGCGGCAGGGGAGGTGTTGCCTGAGTATGGGGCGGTGAAAGGTGGGTTTCCAAAGTGGGTTTCGGTTAAGGATCGGAGATTGTTGCAGGCGGCGGTGAATGAGACGAATTTTAATTTGGTGGTGGCGAAGGATGGCTCTGGGAATTTCACCACTGTCGGTGAGGCCGTCGCCGCCGCTCCGAATTCGAGCACCACCAGGTTTGTAATATACATAAAAGCAGGGGCTTATTTTGAGAACGTGGAAATAGAAAGGGCAAAGGCAAACTTGATGTTTATCGGCGACGGTATCGGAAAGACGCTGATAAAAGGTGACCGGAACGTCGTAGACGGCTGGACTACTTTCCGATCAGCCACCGTGGCGGTGGTTGGCACCGGGTTCATAGCAAAAGGCATAACATTTGAAAACTACGCGGGTCCAAGCAAGCACCAAGCCGTAGCCTTACGAAGCAATTCCGACTTCTCTGCATTTTACCAATGCAGCTTCGTTGGGTATCAAGACACTCTCTACGTTCACTCCCTCCGTCAATTCTACCGCGAATGCGATATCTACGGTACCATCGACTTTATCTTTGGTAACGCTGCTGTCGTTTTCCAAAATTGCAACCTTTATGCTCGAAAACCCAACCCTAACCAACGCAACATATTCACTGCCCAAGGTCGTGAGGACCCTAACCAAAACACAGGAATCTCAATCCTCAATTGTAAGGTTGAAGCCGCTGCCGATCTAATCCCCGTTCTTTCCTCGTTCAAAACTTACTTGGGCCGACCCTGGAAGTTGTACTCGAGGACCGTTTTTCTCCGGTCGTTTATTGGCCAATTGGTTGACCCGGCCGGGTGGCTTGAGTGGAACGGGACGTTTGCGTTGGATACTTTGTATTATGGGGAGTATTTGAACCGTGGGCCCGGTTCGAATGTGACTGGACGAGTTACTTGGCCGGGGTATCGGGTCATTGCTAATGCGACGGAAGCGAGCCAGTTTACGGTTGAGGGGTTTATACAGGGTAGCTCGTGGTTGAACTCAACCGGGATTCCTTTCTTCTCTGGTTTGGCTTGA 1668 50.84 MFGLKNRAQIPSNPTSISTISTFFFIFFLFSFKPISSNPQIHQTARSLCNGTLFPNLCFSKLSSFPQLASLSPQKLAGSALNFTAREVLDAYANCTKLKTHLYCGLNPTDRRALDDCLELLDGSIAELKASICDLAPPQSAARHSHDLLTLVSAAMTNHRTCVDGFYNSSGTVRRRVEQYLGKIGQHLSIDLAMLKKIPGVNRGAAAGEVLPEYGAVKGGFPKWVSVKDRRLLQAAVNETNFNLVVAKDGSGNFTTVGEAVAAAPNSSTTRFVIYIKAGAYFENVEIERAKANLMFIGDGIGKTLIKGDRNVVDGWTTFRSATVAVVGTGFIAKGITFENYAGPSKHQAVALRSNSDFSAFYQCSFVGYQDTLYVHSLRQFYRECDIYGTIDFIFGNAAVVFQNCNLYARKPNPNQRNIFTAQGREDPNQNTGISILNCKVEAAADLIPVLSSFKTYLGRPWKLYSRTVFLRSFIGQLVDPAGWLEWNGTFALDTLYYGEYLNRGPGSNVTGRVTWPGYRVIANATEASQFTVEGFIQGSSWLNSTGIPFFSGLA 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4846710 4852974 + ClCG09G005530.2 Cla09g00512 279932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00512 555 Gene3D - 237 554 IPR012334 -
Cla09g00512 555 PANTHER PECTINESTERASE 42 551 - -
Cla09g00512 555 TIGRFAM PME_inhib: pectinesterase inhibitor domain 20 197 IPR006501 GO:0004857
Cla09g00512 555 SUPERFAMILY Pectin lyase-like 241 553 IPR011050 -
Cla09g00512 555 Gene3D Invertase/pectin methylesterase inhibitor family protein 44 200 IPR035513 -
Cla09g00512 555 PANTHER PECTINESTERASE 42 551 - -
Cla09g00512 555 Pfam Plant invertase/pectin methylesterase inhibitor 46 193 IPR006501 GO:0004857
Cla09g00512 555 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 46 199 IPR035513 -
Cla09g00512 555 SMART PMEI_2 40 194 IPR006501 GO:0004857
Cla09g00512 555 Pfam Pectinesterase 243 539 IPR000070 GO:0030599|GO:0042545
Cla09g00512 555 ProSitePatterns Pectinesterase signature 2. 387 396 IPR033131 -
Cla09g00512 555 CDD PMEI-like_3 47 200 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00045 Cla-Chr1:336726 Cla09g00512 Cla-Chr9:4846710 6.07E-175 dispersed
Cla01g02159 Cla-Chr1:35741531 Cla09g00512 Cla-Chr9:4846710 3.66E-153 dispersed
Cla05g00797 Cla-Chr5:7768370 Cla09g00512 Cla-Chr9:4846710 4.91E-14 dispersed
Cla05g00966 Cla-Chr5:9738714 Cla09g00512 Cla-Chr9:4846710 2.98E-166 dispersed
Cla09g00131 Cla-Chr9:1312134 Cla09g00512 Cla-Chr9:4846710 0 dispersed
Cla09g00512 Cla-Chr9:4846710 Cla10g00004 Cla-Chr10:132994 1.39E-162 dispersed
Cla09g00813 Cla-Chr9:8308978 Cla09g00512 Cla-Chr9:4846710 2.15E-135 dispersed
Cla09g00511 Cla-Chr9:4824313 Cla09g00512 Cla-Chr9:4846710 1.21E-137 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00512 K01051 - csv:101205557 999.964