Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00567 ATGGCCAGCATCAAAGTCCATGGACTCGCCCTTTCCGTACCAACATGCAAGGTTCTAGCTTGTCTCTACGAGAAAGACCTCGAATTCGAGTTTATCAATGTCAAGATGCACGAAGCGGAACATAAGAAACCCCACTTTCTCTCCATCAATCCTTTTGGTCAAATTCCTGGGTTCCAAGATGGGGATTTGACACTTTTTGGTAAAATCTTAAACCAATTCTCTAAAGAACATGATTGTTTGGCAATCACGCAGTACATCGCGAGAAATTATGCTAACAATGGAACCCAATTGATTCCCCAAGACATAAAGCAAGCAGCTACAGTATTAACATGGATTGAAGTGGAGAGTCATCATTTTGATCCACCAGCCTCGAAACTTGTGTATGAGCTCTGTTTGAAGCCAAAGCTTGGTTGGGGTGAGACAGATGTTGCAGTGGTTGAGCAAAAGGAAGCTGAGTTAGCCAAAGTTGTTGACATCTATGAGAAGAAGCTGGCTCAATCCAAGTACTTGGGAGGGGAGTCCTTCAGTTTGGCTGATTTGCTCCATATCCCAGCCATAGGGTTCTTGTTGGAGACACAAACCAAGGAACTGTTTGAATCTCGGCCCCATGTCAATGCTTGGGTGGCTGATATCATGGCCAGGCCGGCTTGGGCTAAGGTGCTTGCTTTGCGTAAGTAA 678 45.13 MASIKVHGLALSVPTCKVLACLYEKDLEFEFINVKMHEAEHKKPHFLSINPFGQIPGFQDGDLTLFGKILNQFSKEHDCLAITQYIARNYANNGTQLIPQDIKQAATVLTWIEVESHHFDPPASKLVYELCLKPKLGWGETDVAVVEQKEAELAKVVDIYEKKLAQSKYLGGESFSLADLLHIPAIGFLLETQTKELFESRPHVNAWVADIMARPAWAKVLALRK 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5224630 5225598 + ClCG09G006120.1 Cla09g00567 279987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00567 225 PANTHER GLUTATHIONE S-TRANSFERASE F6-RELATED 3 225 - -
Cla09g00567 225 PANTHER GLUTATHIONE S-TRANSFERASE RHO 3 225 - -
Cla09g00567 225 Gene3D - 101 225 - -
Cla09g00567 225 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 94 IPR004045 -
Cla09g00567 225 SUPERFAMILY Thioredoxin-like 1 99 IPR036249 -
Cla09g00567 225 Pfam Glutathione S-transferase, N-terminal domain 14 66 IPR004045 -
Cla09g00567 225 Gene3D Glutaredoxin 2 98 - -
Cla09g00567 225 Pfam Glutathione S-transferase, C-terminal domain 122 215 IPR004046 -
Cla09g00567 225 SUPERFAMILY GST C-terminal domain-like 85 224 IPR036282 -
Cla09g00567 225 CDD GST_C_Phi 103 221 IPR034347 -
Cla09g00567 225 SFLD Main.5: Phi-like 1 223 - -
Cla09g00567 225 SFLD Glutathione Transferase (cytosolic) 1 223 IPR040079 -
Cla09g00567 225 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 101 225 IPR010987 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g00567 Cla-Chr9:5224630 Cla11g01560 Cla-Chr11:29326605 8.09E-11 dispersed
Cla09g00566 Cla-Chr9:5214315 Cla09g00567 Cla-Chr9:5224630 1.18E-94 tandem
Cla09g00567 Cla-Chr9:5224630 Cla09g00568 Cla-Chr9:5226530 2.14E-53 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00567 K00799 - csv:101212536 370.163