Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00568 ATGGCGGTGAAGGTGTACGGATTGGCAATCTCAACATGCACATCTACCGTCATTATTTGCCTTAATGAAAAGCAACTTGATTTCCAACTTCTCCATGTTGACCTTTTCAATGGTGAACACAAGCAACCTCCATTTTTGGCCATCAATCCCTTTGGCCAGATTCCAGCCCTAGAAGATGGTGATCTCACCTTATTTGAATCAAGAGCAATCACATCCTACATTGCAAACAAGCACAAGGAAACAGGGCCAGATCTCCTATTGCATCACCAAAGCACCAAAGAAGGAGCCATTGTGAAGCAATGGATAGAGGTAGAGTCTCACCATTACAACCCTGCAATAACTCCCATCATCCATGAGTTCTTCACTGCTCACCTTCGAGGCCAGGAGCCCGACCAGCGCCTCATCGACCAGAACTTGGAGCGCCTACGCGCCGTTCTGGACGTGTATGAGCAGCGCCTAGGGTCCACCAAGTACCTGGGCGGGCCGTGGTACACCTTGGCCGATCTCCACCACCTCCCTTGCACGTTCTACTTCATGAAGACGCCATGGGCCTCAATGGTTAAGGATCGGCCGAATGTGAAGGCTTGGTGGGATGATATTTCATCCCGCCCCGCTTTCCTTAAGTTCAACCAAATGTATGAGAAGAACCTTCAACGAATTCCTCTTCTCCACCCAAATCCATCTCAATTTCTTCGAATAATGGCGAGCATCAAAGTCCATGGAAGCCCCATTTCCACTGCCACAGCCAGAGTTTTCGCTTGTCTTTATGAGAAAGATCTCGATTACGAGTTTGTTCTTCTGGATATGAAAAATAACGAGCACAAGAAACACCCCTTTCTCTCCATTAACCCGTTTGGTCAAGTTCCTGGGTTTCAAGATGGGAATCTCACCATTTTCGAATCAAGGGCCATTACTCAATACTTGGCCAACGCCTACGCCAGCAAGGGAACCCAATTGATCTCCAACGACCCGAAGAAAGCGGCGATCATATCAACGTGGATTGAAGTGGAGGGCCACCATTACGACCCACCGGCGGTTGCTCTGTCGTTTGAGCATCTAGTCAAGCCGCTGTTTGGACTCGGTGAAACTGATCCCGCAGCGGTAGCGGAGAACGAAGCCAAGCTGGGGAAAGTTCTTGACATCTACGAGAATCAGCTTAGCAGAAACAAGTTCTTGGCTGGGGATGAGTTCAGTTTGGCGGATCTGCATCATATACCCAATGTGAGCTACTTGTTCATGACGCCGTCGAAGAAGCTGTTCGAGTCACGGCCACGTGTCAACGCTTGGGTGGCCGAGATCACTGCAAGGCCTTCGTGGGCTAAAGTTGTTGCCTTGCGCAACCAGAGTTAA 1350 49.48 MAVKVYGLAISTCTSTVIICLNEKQLDFQLLHVDLFNGEHKQPPFLAINPFGQIPALEDGDLTLFESRAITSYIANKHKETGPDLLLHHQSTKEGAIVKQWIEVESHHYNPAITPIIHEFFTAHLRGQEPDQRLIDQNLERLRAVLDVYEQRLGSTKYLGGPWYTLADLHHLPCTFYFMKTPWASMVKDRPNVKAWWDDISSRPAFLKFNQMYEKNLQRIPLLHPNPSQFLRIMASIKVHGSPISTATARVFACLYEKDLDYEFVLLDMKNNEHKKHPFLSINPFGQVPGFQDGNLTIFESRAITQYLANAYASKGTQLISNDPKKAAIISTWIEVEGHHYDPPAVALSFEHLVKPLFGLGETDPAAVAENEAKLGKVLDIYENQLSRNKFLAGDEFSLADLHHIPNVSYLFMTPSKKLFESRPRVNAWVAEITARPSWAKVVALRNQS 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5226530 5232365 - ClCG09G006130.2 Cla09g00568 279988

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00568 449 CDD GST_C_Phi 325 443 IPR034347 -
Cla09g00568 449 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 235 316 IPR004045 -
Cla09g00568 449 PANTHER GLUTATHIONE S-TRANSFERASE F13 227 443 - -
Cla09g00568 449 PANTHER GLUTATHIONE S-TRANSFERASE F13 2 211 - -
Cla09g00568 449 Gene3D Glutaredoxin 1 86 - -
Cla09g00568 449 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 82 IPR004045 -
Cla09g00568 449 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 91 222 IPR010987 -
Cla09g00568 449 Gene3D Glutaredoxin 234 320 - -
Cla09g00568 449 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 323 449 IPR010987 -
Cla09g00568 449 SUPERFAMILY GST C-terminal domain-like 73 215 IPR036282 -
Cla09g00568 449 SUPERFAMILY Thioredoxin-like 234 315 IPR036249 -
Cla09g00568 449 PANTHER GLUTATHIONE S-TRANSFERASE RHO 227 443 - -
Cla09g00568 449 CDD GST_C_Phi 93 208 IPR034347 -
Cla09g00568 449 SUPERFAMILY Thioredoxin-like 2 81 IPR036249 -
Cla09g00568 449 Pfam Glutathione S-transferase, C-terminal domain 357 437 IPR004046 -
Cla09g00568 449 Pfam Glutathione S-transferase, C-terminal domain 116 204 IPR004046 -
Cla09g00568 449 CDD GST_N_Phi 237 309 - -
Cla09g00568 449 PANTHER GLUTATHIONE S-TRANSFERASE RHO 2 211 - -
Cla09g00568 449 Gene3D - 323 447 - -
Cla09g00568 449 SFLD Main (cytGST) 1 212 - -
Cla09g00568 449 CDD GST_N_Phi 2 77 - -
Cla09g00568 449 Pfam Glutathione S-transferase, N-terminal domain 243 310 IPR004045 -
Cla09g00568 449 Pfam Glutathione S-transferase, N-terminal domain 2 76 IPR004045 -
Cla09g00568 449 SUPERFAMILY GST C-terminal domain-like 307 445 IPR036282 -
Cla09g00568 449 Gene3D - 88 209 - -
Cla09g00568 449 SFLD Main.5: Phi-like 1 212 - -
Cla09g00568 449 SFLD Main.5: Phi-like 234 445 - -
Cla09g00568 449 SFLD Glutathione Transferase (cytosolic) 234 445 IPR040079 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00568 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - csv:101212771 409.453
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00766 Cla-Chr7:21445627 Cla09g00568 Cla-Chr9:5226530 6.48E-06 dispersed
Cla08g01393 Cla-Chr8:26798196 Cla09g00568 Cla-Chr9:5226530 6.15E-28 dispersed
Cla09g00566 Cla-Chr9:5214315 Cla09g00568 Cla-Chr9:5226530 1.53E-50 dispersed
Cla09g00568 Cla-Chr9:5226530 Cla05g00387 Cla-Chr5:3515056 1.15E-06 dispersed
Cla09g00567 Cla-Chr9:5224630 Cla09g00568 Cla-Chr9:5226530 2.14E-53 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g258 . . . . . . Bma13g00049 . . . . . . . Sed11g1114 Cpe17g00797 . Bhi09g00854 Tan06g0843 Cmetu03g0557 . Hepe03g1914 . . Cla09g00568 Cam09g0603 Cec09g0587 Cco09g0581 Clacu09g0602 . Cre09g0576 Cone17ag0504 . . . Lsi02g02378 Csa07g01815 . Cme01g02342 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g01668 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla09g00568 . 234 442 Glutathione S-transferase Gene Family AT4G02520 57.1 7.2e-64 240.7
Cla09g00567 . 1 220 Glutathione S-transferase Gene Family AT4G02520 51.6 2.3e-54 209.1
Cla09g00566 . 47 236 Glutathione S-transferase Gene Family AT4G02520 54.5 5.2e-54 208.0
Cla09g00568 . 234 443 Glutathione S-transferase Gene Family AT2G02930 57.3 2.1e-63 239.2
Cla09g00566 . 47 237 Glutathione S-transferase Gene Family AT2G02930 56.5 6.5e-57 217.6
Cla09g00567 . 1 221 Glutathione S-transferase Gene Family AT2G02930 52.2 2.1e-55 212.6
Cla09g00566 . 52 241 Glutathione S-transferase Gene Family AT1G02950 51.2 9.3e-50 194.1
Cla09g00568 . 234 443 Glutathione S-transferase Gene Family AT1G02930 54.8 2.5e-61 232.3
Cla09g00566 . 47 237 Glutathione S-transferase Gene Family AT1G02930 51.9 4.3e-53 204.9
Cla09g00568 . 234 443 Glutathione S-transferase Gene Family AT1G02920 55.2 2.3e-62 235.7
Cla09g00567 . 1 221 Glutathione S-transferase Gene Family AT1G02920 50.2 2.3e-54 209.1
Cla09g00566 . 47 237 Glutathione S-transferase Gene Family AT1G02920 54.0 3.0e-54 208.8
Cla09g00568 . 233 448 Glutathione S-transferase Gene Family AT2G47730 57.6 1.0e-67 253.8
Cla09g00567 . 1 225 Glutathione S-transferase Gene Family AT2G47730 51.8 2.8e-57 219.2
Cla09g00566 . 50 241 Glutathione S-transferase Gene Family AT2G47730 53.5 1.8e-56 216.5
Cla09g00568 . 1 208 Glutathione S-transferase Gene Family AT3G62760 58.2 7.4e-72 267.3
Cla04g00746 . 224 421 Glutathione S-transferase Gene Family AT3G09270 52.8 1.4e-57 219.9
Cla05g00265 . 2 213 Glutathione S-transferase Gene Family AT3G09270 50.9 1.4e-57 219.9
Cla07g01007 . 1 214 Glutathione S-transferase Gene Family AT1G78380 71.0 5.7e-88 320.9
Cla01g00840 . 4 221 Glutathione S-transferase Gene Family AT1G78380 56.0 1.5e-67 253.1
Cla07g01008 . 102 255 Glutathione S-transferase Gene Family AT1G78380 59.9 2.3e-49 192.6
Cla07g01007 . 7 214 Glutathione S-transferase Gene Family AT1G78370 65.4 5.6e-80 294.3
Cla01g00840 . 7 220 Glutathione S-transferase Gene Family AT1G78370 53.7 1.4e-62 236.5
Cla07g01008 . 103 242 Glutathione S-transferase Gene Family AT1G78370 55.7 2.3e-41 166.0
Cla07g01007 . 1 214 Glutathione S-transferase Gene Family AT1G78340 64.5 2.5e-80 295.4
Cla01g00840 . 4 218 Glutathione S-transferase Gene Family AT1G78340 53.5 6.3e-63 237.7
Cla07g01008 . 98 242 Glutathione S-transferase Gene Family AT1G78340 56.6 1.1e-43 173.7
Cla07g01007 . 1 216 Glutathione S-transferase Gene Family AT1G78320 53.7 6.8e-61 230.7
Cla07g01007 . 1 218 Glutathione S-transferase Gene Family AT1G17180 70.2 9.4e-91 330.1
Cla01g00840 . 4 224 Glutathione S-transferase Gene Family AT1G17180 54.8 4.3e-67 251.5
Cla07g01008 . 113 242 Glutathione S-transferase Gene Family AT1G17180 63.8 1.9e-46 183.0
Cla07g01007 . 2 217 Glutathione S-transferase Gene Family AT1G17190 58.8 1.9e-75 279.3
Cla07g01007 . 3 214 Glutathione S-transferase Gene Family AT3G43800 59.3 1.2e-72 270.0
Cla07g01007 . 1 218 Glutathione S-transferase Gene Family AT1G53680 58.3 6.4e-71 264.2
Cla01g00840 . 1 224 Glutathione S-transferase Gene Family AT1G53680 53.9 1.3e-63 240.0
Cla07g01008 . 115 243 Glutathione S-transferase Gene Family AT1G53680 58.0 1.3e-39 160.2
Cla02g00037 . 88 254 Glutathione S-transferase Gene Family AT2G02390 68.3 1.0e-61 233.4
Cla05g00238 . 712 875 Glutathione S-transferase Gene Family AT2G02390 51.5 6.8e-45 177.6
Cla02g00037 . 45 257 Glutathione S-transferase Gene Family AT2G02380 64.3 1.3e-76 283.1
Cla05g00238 . 669 874 Glutathione S-transferase Gene Family AT2G02380 53.1 1.4e-57 219.9
Cla07g00766 . 37 265 Glutathione S-transferase Gene Family AT5G41210 65.4 4.5e-86 314.7
Cla07g00766 . 37 265 Glutathione S-transferase Gene Family AT5G41240 63.7 6.6e-83 305.4
Cla02g01351 . 75 294 Glutathione S-transferase Gene Family AT5G02780 65.8 3.6e-80 295.0
Cla10g01965 . 392 610 Glutathione S-transferase Gene Family AT5G02780 64.4 9.2e-76 280.4
Cla02g01351 . 29 292 Glutathione S-transferase Gene Family AT3G55040 61.1 1.2e-85 313.5
Cla10g01965 . 384 610 Glutathione S-transferase Gene Family AT5G02790 65.5 7.7e-83 303.9
Cla02g01351 . 67 294 Glutathione S-transferase Gene Family AT5G02790 62.9 3.8e-82 301.6
Cla02g01324 . 3 261 Glutathione S-transferase Gene Family AT1G19570 54.2 7.2e-72 267.3
Cla05g01223 . 65 272 Glutathione S-transferase Gene Family AT1G19570 58.4 9.5e-72 266.9
Cla02g01324 . 3 260 Glutathione S-transferase Gene Family AT1G75270 57.9 8.8e-78 287.0
Cla05g01223 . 65 274 Glutathione S-transferase Gene Family AT1G75270 61.6 4.1e-75 278.1
Cla05g01223 . 9 271 Glutathione S-transferase Gene Family AT5G16710 68.3 1.4e-101 366.3
Cla11g01560 . 1 267 Glutathione S-transferase Gene Family AT1G77290 70.0 2.9e-110 395.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014346 0 1 0 1 0 1 0 1 1 0 1 1 0 1 1 0 1 2 0 1 0 1 1 1 1 1 1 0 1 2 22
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla09g00568 Cla_Chr09 FPKM 61.725376 65.288803 65.775673 69.316101 50.799847 48.494049 48.272224 69.827843 73.152184 71.689034