Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00570 ATGAGGAGAAAATCCAAAACCCTAAGAACGACGATGACGACGAGGAGGAAGAAGATGAAAGGGACATTGACGAGGCACTTGCAGGTTCAGTTAGGGCAAGTTTCACTCGCTCCTCTCCACCTCCACCGCTCCTCTTCCGCCGCCGCTGCTTGCTTCCAGGACTTGCCTGAATCTGAAGCACCGCCGACGGTCAACGTTTCTGACGCTCTCCCCTCCTCCTCTCCTAACTTTGAGGACAGAGATTTCATTCTTAGCCAGGACTTCTTCTGCACCCCTGACTATATCACCCCGGACAATCAAAATTTGTTGAATGGTGTGGATAACAATGAGGAATGCATTCCTTGCCCAAAATCTCCAGAGAAGATTAATACTGTGAAAACTAAGAGAAAAATACATGAAAGTGTTTTAGTACATCCTCTGAGTCCGAGTTTGTCTGGCTGCGAACAAGTTGTGGAGCTTGGAAACGACATGTTTGGATCAGATGATGTGGATATGGAGAAAGAGACAATGGCCATGCCAAAGAAAGGAAACTATGTTTCTCAATCTGCAGTTGCTCTACGCTGTCGAGTTATGCCTCCTCCTTGCATGAAGAACCCATACCTGAAAGATGCTTCAGATGTAGGCATAGACCCATTTGGTAATCAACGAACAAAATGTGCAGGTACAGTGCAATTAGTTCTCAAAGACATCGAAAGTTTTTTTCCTGCTCTGTTTAGTGGAGATGGTCTTTCAAGATATCACACTGATTTTCATGAGATAAAGCAAATAGGGACTGGAAATTTTAGCCGTGTCTTCAAGGTATTAAAGAGAATTGATGGTTGCTTATATGCTGTCAAACAAAGCACAAGACCGTTGAATCAAGAAATAGAAAGGAGGAGAGCTTTGATGGAAGTTCAAGCTTTGGCAGCTTTAGGATCTCATGAAAACATTGTTGGATACTACTCTTCATGGTTTGAAAATGAACAACTCTATATTCAAATGGAGCTCTGTGATTGTAGTTTATCAATTGGCAGGTATTCCCACCCATTCTCTGAGGTAGATGCGCTGAGAGCCTTGTATCAGATTGCAAAGGCATTGCTATTTGTGCACGAGAAAGGAGTAGCACATTTAGATGTGAAACCTGACAATATTTATGTCAAAGATGGTGTCTATAAACTTGGTGATTTTGGGTGTGTTACGCTTCTTGATAAGAGCCTACCGATTGAGGAGGGTGATGCACGCTATATGCCTCAAGAAATTCTGAATGAAAGATATGATTATCTTGACAAAGTTGATATTTTCTCCTTGGGAGCTGCTATTTATGAAATTGCCCGAGGATCCACATTACCAGAAACGCATTTTATGAACCTTAAGGAGGGAAAATTGCCACTCCTTCCTGGTCATTCATTGCAATTTCAAAACTTAATCAAGGCTATGGTGGATCCTGACCCGACACGGCGTCCTTCGGCAAGGGAAGTTCTTGAGAATCCAATATTTGATAAGGTCAGAAATCATAAACAATCATAG 1506 42.43 MRRKSKTLRTTMTTRRKKMKGTLTRHLQVQLGQVSLAPLHLHRSSSAAAACFQDLPESEAPPTVNVSDALPSSSPNFEDRDFILSQDFFCTPDYITPDNQNLLNGVDNNEECIPCPKSPEKINTVKTKRKIHESVLVHPLSPSLSGCEQVVELGNDMFGSDDVDMEKETMAMPKKGNYVSQSAVALRCRVMPPPCMKNPYLKDASDVGIDPFGNQRTKCAGTVQLVLKDIESFFPALFSGDGLSRYHTDFHEIKQIGTGNFSRVFKVLKRIDGCLYAVKQSTRPLNQEIERRRALMEVQALAALGSHENIVGYYSSWFENEQLYIQMELCDCSLSIGRYSHPFSEVDALRALYQIAKALLFVHEKGVAHLDVKPDNIYVKDGVYKLGDFGCVTLLDKSLPIEEGDARYMPQEILNERYDYLDKVDIFSLGAAIYEIARGSTLPETHFMNLKEGKLPLLPGHSLQFQNLIKAMVDPDPTRRPSAREVLENPIFDKVRNHKQS 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5244434 5249202 + ClCG09G006150.2 Cla09g00570 279990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00570 501 SUPERFAMILY Protein kinase-like (PK-like) 243 496 IPR011009 -
Cla09g00570 501 ProSiteProfiles Protein kinase domain profile. 250 492 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g00570 501 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 19 408 - -
Cla09g00570 501 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 421 497 - -
Cla09g00570 501 Gene3D Phosphorylase Kinase; domain 1 240 329 - -
Cla09g00570 501 PANTHER BNAA08G27310D PROTEIN 19 408 - -
Cla09g00570 501 PANTHER BNAA08G27310D PROTEIN 421 497 - -
Cla09g00570 501 ProSitePatterns Protein kinases ATP-binding region signature. 256 279 IPR017441 GO:0005524
Cla09g00570 501 Pfam Protein kinase domain 250 492 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g00570 501 SMART serkin_6 250 492 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g00570 501 Gene3D Transferase(Phosphotransferase) domain 1 330 497 - -
Cla09g00570 501 ProSitePatterns Serine/Threonine protein kinases active-site signature. 367 379 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g00570 Cla-Chr9:5244434 Cla05g00447 Cla-Chr5:3987535 1.82E-23 dispersed
Cla09g00570 Cla-Chr9:5244434 Cla01g01633 Cla-Chr1:31130439 8.29E-19 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80793 PF00069 Pkinase 5.80E-47 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00570 K06632 - csv:101213255 882.863