Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00572 ATGGATGAAAACACAGGCATGTCAGAGAGATTAGTAGAATTTAAGTACGATTTCAGCGGCGGCGGTGGCGGTGTCGGTGGTAGCACCGGTGGTTCGAGTGAGGAAGCTGGTAACGGCGTTGGCGGGGTCGTAAAAGAGCAAGATCGGTTACTTCCAATAGCAAATGTGGGGAGGATCATGAAGCAAATTCTACCTCCAAATGCCAAAATCTCCAAAGAAGCCAAAGAAACTATGCAAGAGTGCGTGTCGGAGTTCATCAGTTTCGTGACAGGCGAGGCGTCGGATAAGTGCCATAAAGAGAAGAGGAAGACTGTTAATGGTGATGATATTTGCTGTGCTTTGGCCACACTTGGATTTGATGATTATGCTGAGCCTTTGAGAAGGTATTTGATGGATGAAAACACAGGCATGTCAGAGAGATTAGTAGAATTTAAGTACGATTTCAGCGGCGGCGGTGGCGGTGTCGGTGGTAGCACCGGTGGTTCGAGTGAGGAAGCTGGTAACGGCGTTGGCGGGGTCGTAAAAGAGCAAGATCGGTTACTTCCAATAGCAAATGTGGGGAGGATCATGAAGCAAATTCTACCTCCAAATGCCAAAATCTCCAAAGAAGCCAAAGAAACTATGCAAGAGTGCGTGTCGGAGTTCATCAGTTTCGTGACAGGCGAGGCGTCGGATAAGTGCCATAAAGAGAAGAGGAAGACTGTTAATGGTGATGATATTTGCTGTGCTTTGGCCACACTTGGATTTGATGATTATGCTGAGCCTTTGAGAAGGTATTTGGTTAGGTATAGAGATATGGAGGGGGAGAGAGCTCAACAAAATAAGGGA 828 46.98 MDENTGMSERLVEFKYDFSGGGGGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLMDENTGMSERLVEFKYDFSGGGGGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKG 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5299531 5300785 - ClCG09G006170.1 Cla09g00572 279992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00572 276 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Cla09g00572 276 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Cla09g00572 276 PRINTS CCAAT-binding transcription factor subunit A signature 246 264 - -
Cla09g00572 276 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 164 275 - -
Cla09g00572 276 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 34 131 - -
Cla09g00572 276 SUPERFAMILY Histone-fold 47 135 IPR009072 GO:0046982
Cla09g00572 276 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 50 114 IPR003958 -
Cla09g00572 276 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 180 244 IPR003958 -
Cla09g00572 276 ProSitePatterns NF-YB/HAP3 subunit signature. 81 97 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cla09g00572 276 Gene3D Histone, subunit A 43 143 IPR009072 GO:0046982
Cla09g00572 276 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 164 275 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cla09g00572 276 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 34 131 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cla09g00572 276 SUPERFAMILY Histone-fold 177 274 IPR009072 GO:0046982
Cla09g00572 276 ProSitePatterns NF-YB/HAP3 subunit signature. 211 227 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cla09g00572 276 Gene3D Histone, subunit A 172 276 IPR009072 GO:0046982
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01631 Cla-Chr3:32203447 Cla09g00572 Cla-Chr9:5299531 3.12E-37 dispersed
Cla09g00572 Cla-Chr9:5299531 Cla10g00404 Cla-Chr10:5486885 9.57E-45 dispersed
Cla09g00572 Cla-Chr9:5299531 Cla02g01361 Cla-Chr2:27936449 1.34E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61688 PF00808 CBFD_NFYB_HMF 2.10E-26 CL0012 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00572 K08065 - csv:101204763 268.085