Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla09g00572 | ATGGATGAAAACACAGGCATGTCAGAGAGATTAGTAGAATTTAAGTACGATTTCAGCGGCGGCGGTGGCGGTGTCGGTGGTAGCACCGGTGGTTCGAGTGAGGAAGCTGGTAACGGCGTTGGCGGGGTCGTAAAAGAGCAAGATCGGTTACTTCCAATAGCAAATGTGGGGAGGATCATGAAGCAAATTCTACCTCCAAATGCCAAAATCTCCAAAGAAGCCAAAGAAACTATGCAAGAGTGCGTGTCGGAGTTCATCAGTTTCGTGACAGGCGAGGCGTCGGATAAGTGCCATAAAGAGAAGAGGAAGACTGTTAATGGTGATGATATTTGCTGTGCTTTGGCCACACTTGGATTTGATGATTATGCTGAGCCTTTGAGAAGGTATTTGATGGATGAAAACACAGGCATGTCAGAGAGATTAGTAGAATTTAAGTACGATTTCAGCGGCGGCGGTGGCGGTGTCGGTGGTAGCACCGGTGGTTCGAGTGAGGAAGCTGGTAACGGCGTTGGCGGGGTCGTAAAAGAGCAAGATCGGTTACTTCCAATAGCAAATGTGGGGAGGATCATGAAGCAAATTCTACCTCCAAATGCCAAAATCTCCAAAGAAGCCAAAGAAACTATGCAAGAGTGCGTGTCGGAGTTCATCAGTTTCGTGACAGGCGAGGCGTCGGATAAGTGCCATAAAGAGAAGAGGAAGACTGTTAATGGTGATGATATTTGCTGTGCTTTGGCCACACTTGGATTTGATGATTATGCTGAGCCTTTGAGAAGGTATTTGGTTAGGTATAGAGATATGGAGGGGGAGAGAGCTCAACAAAATAAGGGA | 828 | 46.98 | MDENTGMSERLVEFKYDFSGGGGGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLMDENTGMSERLVEFKYDFSGGGGGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKG | 276 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 5299531 | 5300785 | - | ClCG09G006170.1 | Cla09g00572 | 279992 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla09g00572 | 276 | PRINTS | CCAAT-binding transcription factor subunit A signature | 97 | 115 | - | - | |
Cla09g00572 | 276 | PRINTS | CCAAT-binding transcription factor subunit A signature | 78 | 96 | - | - | |
Cla09g00572 | 276 | PRINTS | CCAAT-binding transcription factor subunit A signature | 246 | 264 | - | - | |
Cla09g00572 | 276 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 | 164 | 275 | - | - | |
Cla09g00572 | 276 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 | 34 | 131 | - | - | |
Cla09g00572 | 276 | SUPERFAMILY | Histone-fold | 47 | 135 | IPR009072 | GO:0046982 | |
Cla09g00572 | 276 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 50 | 114 | IPR003958 | - | |
Cla09g00572 | 276 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 180 | 244 | IPR003958 | - | |
Cla09g00572 | 276 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 81 | 97 | IPR003956 | GO:0005634|GO:0006355|GO:0043565 | |
Cla09g00572 | 276 | Gene3D | Histone, subunit A | 43 | 143 | IPR009072 | GO:0046982 | |
Cla09g00572 | 276 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 164 | 275 | IPR027113 | GO:0001228|GO:0006355|GO:0016602 | |
Cla09g00572 | 276 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 34 | 131 | IPR027113 | GO:0001228|GO:0006355|GO:0016602 | |
Cla09g00572 | 276 | SUPERFAMILY | Histone-fold | 177 | 274 | IPR009072 | GO:0046982 | |
Cla09g00572 | 276 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 211 | 227 | IPR003956 | GO:0005634|GO:0006355|GO:0043565 | |
Cla09g00572 | 276 | Gene3D | Histone, subunit A | 172 | 276 | IPR009072 | GO:0046982 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla03g01631 | Cla-Chr3:32203447 | Cla09g00572 | Cla-Chr9:5299531 | 3.12E-37 | dispersed | |
Cla09g00572 | Cla-Chr9:5299531 | Cla10g00404 | Cla-Chr10:5486885 | 9.57E-45 | dispersed | |
Cla09g00572 | Cla-Chr9:5299531 | Cla02g01361 | Cla-Chr2:27936449 | 1.34E-38 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61688 | PF00808 | CBFD_NFYB_HMF | 2.10E-26 | CL0012 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla09g00572 | K08065 | - | csv:101204763 | 268.085 |