Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00573 ATGGGAATCTCTAACATTACAGGTGAAATTCATCATCCAAACTTGTCTTCAGGCAACAATGTGGAAGATCAATTAGAAGAAGTTGAACAAAACAATAATCAACATCAACTTCTTAATCACTTCCTCTATGGCTCTCCCAATGGAGATCAAACCAACTCCCATGGCTCATCTAATTCACTTGATCCCCACCAACAAAGAGTTAAGAAGAAGCGAAATCTTCCCGGCACTCCAGATCCAAATGCTGAAGTTATTGCTCTATCACCGACAACCCTAATGGCTAGAAATAGGTTTGTGTGTGAGATTTGCAACAAAGGGTTTCAAAGAGATCAAAACCTTCAATTGCATAGGAGAGGCCACAACCTGCCATGGAAACTCCGGCAAAGAACCGGCACCGAAGTGAAGAAAAGGGTCTATGTGTGCCCCGAACTGACATGCGTTCATCACAACCCGGCCCGAGCTCTCGGCGATCTTACCGGAATTAAGAAGCATTTTAGTCGAAAGCATGGGGAGAAGAAATGGAAGTGTGAGAAATGCTCCAAGAAATATGCAGTTCAATCTGATTTGAAAGCTCATCAAAAGACTTGTGGCACTAGGGAATACAAATGTGATTGTGGAACTCTATTTTCCAGAAGGGACAGCTTCATCACCCACAGAGCCTTTTGCAATGCATTAACAGAAGAAAACAACAAACTAAAGCAAGGAATTCTCAATAATAATAATAATAATAATGATAACATAGAACCAACCTCAATTATCTCCACTCCAAAACTCCCTCCTTTTGGCACATCAATCATCCCTGAATTCAACCCTTATGATCAAAAAAACCCTTTTAAATCCCTCCCCCAAGAACTCAGCAACTCGGCCCCGGCCACCGGTGCACCTGGAGGCTTGTTCATGGTCGGACCCCGAAGCAGCAACAACTCTTCTTCTTTTTCAAACCTTAAGCTCAGCTCCACCACCTCTTCGCGCTTTAGTTGCCTTTATGATAGTAAAAATGGTTGCCTTCAGGATTCTGGGTCGGCAACAGCAGCATTGGTAACGTCGGCCACCGCCTTGTTACAGAAAGCTGCGCAAATAGGAGCAACGACAAGCTCCGTTGGTGTTCTGAAGTCACCATTGTTGGAAATACCTCATTCTGATGATCAAGCAGACGTGGTAGGGATGAATATGGGAATGTACGGACACATGATGATGATGAAAGAACAAGAGAATTGTAGTAGCAACAACTCAAGTTTTGTCGTCCACGAAAAGGGCCAGTGGCGACCAATGTCGAGATTTTCCGGTGGCAATAACGGCGGCGAAGAGAGTCAGATGATGACTTTGGATTTGTTGGGAGAAAGAGGGTGGAGGCTGAGGCAATTGCAGGGAGATGAAAGCCACCATCACCAGCAGGAGATGATGCCAATTATGAAGCATTTTAAGATGCACAACTTTCATGGGGATTCAAATGTTGACAAATCTATATTTGAGTATTGA 1476 43.83 MGISNITGEIHHPNLSSGNNVEDQLEEVEQNNNQHQLLNHFLYGSPNGDQTNSHGSSNSLDPHQQRVKKKRNLPGTPDPNAEVIALSPTTLMARNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTGTEVKKRVYVCPELTCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDLKAHQKTCGTREYKCDCGTLFSRRDSFITHRAFCNALTEENNKLKQGILNNNNNNNDNIEPTSIISTPKLPPFGTSIIPEFNPYDQKNPFKSLPQELSNSAPATGAPGGLFMVGPRSSNNSSSFSNLKLSSTTSSRFSCLYDSKNGCLQDSGSATAALVTSATALLQKAAQIGATTSSVGVLKSPLLEIPHSDDQADVVGMNMGMYGHMMMMKEQENCSSNNSSFVVHEKGQWRPMSRFSGGNNGGEESQMMTLDLLGERGWRLRQLQGDESHHHQQEMMPIMKHFKMHNFHGDSNVDKSIFEY 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5334178 5337338 + ClCG09G006180.2 Cla09g00573 279993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00573 491 MobiDBLite consensus disorder prediction 40 62 - -
Cla09g00573 491 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 119 IPR013087 -
Cla09g00573 491 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 36 420 - -
Cla09g00573 491 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Cla09g00573 491 Gene3D Classic Zinc Finger 75 142 - -
Cla09g00573 491 ProSiteProfiles Zinc finger C2H2 type domain profile. 173 201 IPR013087 -
Cla09g00573 491 SUPERFAMILY beta-beta-alpha zinc fingers 96 194 IPR036236 -
Cla09g00573 491 SMART c2h2final6 97 119 IPR013087 -
Cla09g00573 491 SMART c2h2final6 138 168 IPR013087 -
Cla09g00573 491 SMART c2h2final6 173 193 IPR013087 -
Cla09g00573 491 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 36 420 - -
Cla09g00573 491 Coils Coil 18 38 - -
Cla09g00573 491 Gene3D Classic Zinc Finger 152 231 - -
Cla09g00573 491 MobiDBLite consensus disorder prediction 40 81 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g00573 Cla-Chr9:5334178 Cla03g01633 Cla-Chr3:32212774 2.33E-111 dispersed
Cla09g00573 Cla-Chr9:5334178 Cla04g00874 Cla-Chr4:23762728 7.74E-108 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61689 None None None None Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00573 - - bhj:120069139 801.586