Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00597 ATGGTGGCTGGTGATGACGAACATTTCAGGCATGAGCCGCAACAATATGATTTGCGCTTCCGTGTAGAACAGATTTCTACATGGGTTGTTGTTGCGATGAAGAATATATTTCTTAGCTTACCATTTGATTCCTCCCTTTTGGACTCCTCCCTTTTGGACTCCTCTTCTCTCGATTCTTTTGGCGGTAGAGATAAGTGTGCGCTGAGGACTTGCCCAGTATTCGATCATTTCATGGAATCGTATATTGGAAACACTGTGATGAAGTTGGCTTTGAAAGCAGACCCCGAAGAGCATCGTGTTGCATTGTTTGTATTACTTCTCTGTGCTTGTATTGTAATTGGGCATCTTCTTGAGAAAAGTCGTTGGATAAATGAATCAGTCACTGCCATTTTCATTGGTCTTTTCACTGGAACTCTCATCTTATTAACAACCAAAGGCACAAACTCACGTATCCTAGTGTTTAGTGAAGAACTTTTCTTCACTTATGTTCTTCCACCAATTATTTTTAATGCCGGGTTTCAGGTGAAAAAGAAACAGTTCTTTCGAAACTTTATAACGATCATGTTGTTTGGGGCAGTTGGTACTGTGATCTCTTTTTTCATCATATCACTAGCCCTTGGAGCAATCTTATCAGCGACAGATAGTGTTTGCACCTTGCAGGTGCTTAATCAGGATGAGACTCCTTTACTGTATAGTCTAGTCTTTGGTGAAGGTGTTGTTAATGATGCTACTTCTGTCGTATTTTTCAAAGCAATCCAGAGATTCGACCTCTCTCACATGACCTCATCCAACGGCATTCAGCTTCTTGGAAACTTTTTCTATTTATTTTTTACGAGCACCTTGCTGGGAGCGATTGTTGGGTTGTCCAGTGCATACATCATAAAGAAGCTGCACTCAACTGATCGGGAGGTTGCTTTGATGATTTTAATGCCTTACCTTTCATATATGACTGCTGAATTGTGCAATCTAAGTGGTATTCTTACCATGTTCTTTTGTGGGATTGTCATGTCTCATTACACTTGGCATAATGTGACTGAAAGTTCACGAGTGACCACCAAGCATACTTTTGCAACATTCTCATTTGTTTCAGAGATTTTCATCTTTCTATATGTTGGTATGGATGCCTTGGATATTGAGAAGTGGAAAGTTGTTGGCCAAAGGCCTTGGACATCGGCTGGAGTGAGTCTAATACTGCTCGGTTTAGTCCTTGTTGCGAGAGCAGCTTTTGTTACAATTTGGTGGGCTGGGCTCATGAGGGGTGCTGTATCTGTGGCCCTTGCTTATAATCAGTTTACGAGGTCAGGGCACACGCAACTACAAGGGAATGCCATCATGATTACTAGCACAATCACAATTGTTCTCATCACCAATGTGGTATTTGGACTATTAACTAAGCCTATTGTAAGGTACATGCTTTCACTGCATGATAAACAAATAGACGGCATAATTGTAACAGATTCTCCACTTAAGTCGCTGAATGATCCTCTTCTGCCTGGTGTTGAAGATAATGAATCCGATGCCGGAGGATCGAACATTCCCCGTCCTACCAGCTTACGTATGATGTTGACAACTCCAACTCGTTCTGTCCATTACTATTGGCGGATGTTCGATGATCGATATATGCGTCCTGTTTTTGGTGGAAGAGGCTTTGTACCTTTCATCCCCGACCGGGAAGCGGCTCACTTCACGTTTTTTGCGGTGCTACTCTTTGTCTGTTATCTAATTGTTCGTCTTTTTGAGAAGAAACGTTGGCTGAATGAGTCAATTACTTCCCTAGCTATTGGAATTTTCACTGGAATTATCGTTCTCCTAACGACTAGAGGAAAAAGTTCTCACATCCTAGAATTCAATGAACAGCTTTTCTTCATTTACCTTCTTCCACCCATAATATTTAATGCTGGGTTTCAGGTGAAGAAGAAACAGTTCTTTCGCAACTTTCTGGCAATCTTATTGTTTGGTGCTTTTGGAAGTGTGATATCATTCTTCATCATATCACTAGCACTCGGAGCAATCTTAACAGCGACAGATAGTGTTTGCACCTTGCAAGTTCTTAAACAAGATGAGACACCTTTACTTTATAGTCTGGTCTTTGGGGAAGGTGTGGTCAATGATGCTACCTCTGTGGTACTCTTCAATGCAATCAAGAAATTTGACCTCTCTCACATCACTTCAACAAATGCCATTCGGTTAGCTGGAAGTTTCTTAGGTTTGTTCTTGGGAAGCACACTACTGGGAATTGCAGTTGGGCTGCTATGTGCATTTATAATAAAGAAGCTATCCTTAGGCAGGCACCCTACAGATTATGAAGTTGTTCCGATGATTTTGATGGCCTACCTTTCATATATGATTGCTGAATTGTTGCTTCTTAGTGGTATTCTTAGCGTGTTCTTTTGTGGGATTGTCATGTCTCACTACACATCTTGGAATAATAGGACTGACAGTACCAATAATGGGATTGGCAGTTCCAGACTAATACCACGCCATGCTTTTGCGACATTATCTTTCGTAGCAGAGATCTTCATCTTCCTTTATGTTGGTATGGATGCATTGGATATTGAGAAGTGGAATGTTGTTAGAGAAAGGCCTGGGAAATCAGTTGGAGCAAGTCTTATACTGCTAGGCCTTGTTCTTGTTGGAAGAGCAGCTTTTTTTGCAAGGTCAGAAGAAAAGGAACAAGGGGCTTCGATAATGATAACTAGCACCATCATAATTGTTCTCTTCACAAACGTGGTGTTTGGATTGTTGACCAAGTCCATAGTAAGACGAATGATTCCTCGAATTAACCACGAGTCAAGACATTTATATTTTCCCTTACTTCAAGAAATGAGTGATTCGTTGCTTGATGAGAATGATATTGAATCCGACACCAACGAACTTAACCAACTTCCTCCAGACAGTTTCCTGTCGTTTATGAAATCTCCAACTCAATGTCTCCATTATTATTGGTACAAGTTTGATGATTGCTTCATGCGTCCTGTTTTTGGAGGGAGTGAATCTTCATTGGAGCATCTCACTCCCTCAGCTTCTCCCTGA 3033 41.11 MVAGDDEHFRHEPQQYDLRFRVEQISTWVVVAMKNIFLSLPFDSSLLDSSLLDSSSLDSFGGRDKCALRTCPVFDHFMESYIGNTVMKLALKADPEEHRVALFVLLLCACIVIGHLLEKSRWINESVTAIFIGLFTGTLILLTTKGTNSRILVFSEELFFTYVLPPIIFNAGFQVKKKQFFRNFITIMLFGAVGTVISFFIISLALGAILSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVFFKAIQRFDLSHMTSSNGIQLLGNFFYLFFTSTLLGAIVGLSSAYIIKKLHSTDREVALMILMPYLSYMTAELCNLSGILTMFFCGIVMSHYTWHNVTESSRVTTKHTFATFSFVSEIFIFLYVGMDALDIEKWKVVGQRPWTSAGVSLILLGLVLVARAAFVTIWWAGLMRGAVSVALAYNQFTRSGHTQLQGNAIMITSTITIVLITNVVFGLLTKPIVRYMLSLHDKQIDGIIVTDSPLKSLNDPLLPGVEDNESDAGGSNIPRPTSLRMMLTTPTRSVHYYWRMFDDRYMRPVFGGRGFVPFIPDREAAHFTFFAVLLFVCYLIVRLFEKKRWLNESITSLAIGIFTGIIVLLTTRGKSSHILEFNEQLFFIYLLPPIIFNAGFQVKKKQFFRNFLAILLFGAFGSVISFFIISLALGAILTATDSVCTLQVLKQDETPLLYSLVFGEGVVNDATSVVLFNAIKKFDLSHITSTNAIRLAGSFLGLFLGSTLLGIAVGLLCAFIIKKLSLGRHPTDYEVVPMILMAYLSYMIAELLLLSGILSVFFCGIVMSHYTSWNNRTDSTNNGIGSSRLIPRHAFATLSFVAEIFIFLYVGMDALDIEKWNVVRERPGKSVGASLILLGLVLVGRAAFFARSEEKEQGASIMITSTIIIVLFTNVVFGLLTKSIVRRMIPRINHESRHLYFPLLQEMSDSLLDENDIESDTNELNQLPPDSFLSFMKSPTQCLHYYWYKFDDCFMRPVFGGSESSLEHLTPSASP 1010
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5532619 5552423 + ClCG09G006460.1 Cla09g00597 280017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00597 1010 PANTHER SODIUM/HYDROGEN EXCHANGER 561 884 IPR018422 GO:0006812|GO:0015299|GO:0016021
Cla09g00597 1010 PANTHER SODIUM/HYDROGEN EXCHANGER 888 997 IPR018422 GO:0006812|GO:0015299|GO:0016021
Cla09g00597 1010 PANTHER SODIUM/HYDROGEN EXCHANGER 204 410 IPR018422 GO:0006812|GO:0015299|GO:0016021
Cla09g00597 1010 PANTHER SODIUM/HYDROGEN EXCHANGER 87 204 IPR018422 GO:0006812|GO:0015299|GO:0016021
Cla09g00597 1010 Gene3D - 664 713 - -
Cla09g00597 1010 Gene3D - 202 251 - -
Cla09g00597 1010 PANTHER SODIUM/HYDROGEN EXCHANGER 888 997 - -
Cla09g00597 1010 PANTHER SODIUM/HYDROGEN EXCHANGER 204 410 - -
Cla09g00597 1010 PANTHER SODIUM/HYDROGEN EXCHANGER 410 558 - -
Cla09g00597 1010 PANTHER SODIUM/HYDROGEN EXCHANGER 87 204 - -
Cla09g00597 1010 PANTHER SODIUM/HYDROGEN EXCHANGER 410 558 IPR018422 GO:0006812|GO:0015299|GO:0016021
Cla09g00597 1010 PANTHER SODIUM/HYDROGEN EXCHANGER 561 884 - -
Cla09g00597 1010 Pfam Sodium/hydrogen exchanger family 103 469 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cla09g00597 1010 Pfam Sodium/hydrogen exchanger family 566 882 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cla09g00597 1010 PRINTS Na+/H+ exchanger signature 158 169 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cla09g00597 1010 PRINTS Na+/H+ exchanger signature 172 186 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cla09g00597 1010 PRINTS Na+/H+ exchanger signature 187 195 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00506 Cla-Chr6:6145109 Cla09g00597 Cla-Chr9:5532619 4.80E-148 dispersed
Cla09g00597 Cla-Chr9:5532619 Cla09g02040 Cla-Chr9:37969153 1.82E-92 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00597 - K14724 csv:101206431 826.624