Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00620 ATGTCCCTTTCTCCCCATCTTTTGCTCCTTCTTCTCACTATAGCATCCCTTTCTGCCGCCGCCGACGCCGTTGAATGCCCTCTCAATTTCACCGTCCTTCGCCAGTTCTCCCAGGGCTCCGCCGTTTCCCGCCCCGATTTCTCCGACGAATGTCAATACATCCGCCTCGGTCTCCGCCTCGTCCTCTCGCAGTACCTCAAACTCACCGGCTCCTTCTTGCCCCCGGTGAACTCTTCCGATTCATGCTGGAATTCTTACCAATCGATAGTGGATGTCACATGGCCGAATTTCGACATTCGGAGCTCTTGCGGGTTTCAAACCGGGTGGATCTCACAGGGCTGTATGAACATCAGGACCAAATCCGAGTTCGAGAGAATCGTTCCTAAATCGGCCCTCGATGGTGTTGTTGCGAACTGTAATCAATCGCTTGAGAATGGTTCCCCCTGTGCCTCGTGCACGACCAGGCTCGCGATCGTTCAGGCCTCGTTCTTGACCGGTCCGTCGATCGGCAATGTCACCGATTGCCCCGCATATCCGTCGATCTACGTGGCGGCGTTTGTAAATCAGTTCGGACCGACCGATTGGGGAACTGCCAAATGCTTATTCTCGCTCCATCCCCTTTCGTCGGGGGATTCGAGGAGCAAGAAGCGGAATACGGTGGTGTTAGTGGTTTTAATTTGCTGTGGCGTTGCGGCAGCAGCGGTGGCGGTTGCAGGCGGGTTGTTTTTCTGGCGGAAACAGGGGAAAGTGAAGAAGAACGATAGAATTGGTAGAGTTGAGACAGGGTTGGGTTCTGGATTGGAGTCGATAAGTGCAAGCACTACTTTGGTGAAGTTCACATTCGATGAAATCAAGAGGGCGACAAGGAATTTTTCTAGAGATAACATAATTGGGAGAGGGGGTTATGGAAATGTGTATAAAGGGGTTCTATCAGATGATTCTGAAGTTGCATTGAAGAGGTTTAAGAACTGTTCTGCAGCAGGGGACGCCATTTTTGCTCATGAAGTGGAGGTAATTTCAAGTGTCAGGCATGTTAATCTTGTTGCTTTAAGAGGATATTGTATTGCAACTACACCAATGGAGGGTCACCAGAGAATAATTGTGTGTGATCTGATGAAGAATGGGAGTCTTTATGACCATTTGTTTGGGTTTTCAGATAAGAGGTTGAGTTGGCCAATTAGGCAAAAGATTGCTCTTGGCACAGCTAGGGGATTGGCTTATCTGCATTATGGAGCTCAGCCTGCCATTATCCATAGAGATATCAAAGCCAGCAACATTCTTTTGGATGAAAACTTTGATCCCAAGGTTGCTGACTTTGGTTTAGCCAAGTTCACTCCAGAAGGAATGACTCATTTGAGCACAAGAGTTGCTGGAACTATGGGGTATGTGGCGCCCGAGTACGCTTTATACGGCCAGTTGACGGAGAGGAGTGATGTGTATAGCTTTGGAGTTGTTTTGCTCGAGCTTTTGAGTGGGAGGAAGGCACTCGGGGTGAGGAGCCATGACAGCCAGCCCTTTCTAGTGACTGATTGGGCTTGGTCTTTGGTTAGGGAACAAAAAGCAATGGATGTTATTGAAGAAGGCATGCCAGAGCTGGGTTCTCCAGAGGTTGTTGAGAAGTATGTATTGATTGCTGTTCTTTGTTCCCATCCCCAGCTCTATGCCAGGCCAACAATGGATCAAGTTGTGAAAATGTTGGAAACTGAGCTCTCTGTTCCTTCAATCCCGGAGAGACCCATCCCTCTAGTTGCTGATATTGATGAAATTGAGAGATCTATGAGTAGTAGTGGTTCGGCTCAGCATTCTGGTTCAGTGGAGATTGGACCACGCCGCAGAGGGAGAGAGAGAGAATCGTCGGGCGACATGGCCGCCGCCAGGCCTCCCAAAACGCCGATGAAGGCAGGACGGCTGCCAGTAGGTCTATTTGCTGCACAATGTGAGGAATGCTTCAAATGGAGGTTGATAAGTACCCAAGAGGAGTACGAGGATATTAGAAGCAAAATGATAGAAGAACCCTTTACTTGCCATAGGAAAACTGATACTTCTTGCAACGATCCTCCCGATATTGATTATGATACAACTCGAACTTGGGGAATTGACAAACCCAACATCCCAAAGACCCCAGAAGGTTTCACAAGACGTTTAGTTCTGAGAAAGAATTTCTCTAAATTTGATGCTTACTATGTTACACCCACAGGGAAGACAGTGAGATCTTCTACGGAGATGCTAGCTTTTGTAGAAGCAAATCCACAATACAAGGATATACCTCTTTCAAGCTTCAGTTTTGCTGTCCCAAAAGTAATGGAAGAAACTGTACCCGAAAGCATTTTGAAAGAGGGGTTAAATAGCAGCAGTGTCAAAAGATATAAGAAAACAAAGAATGAATCTTCCTTCCCATACTGA 2403 47.57 MSLSPHLLLLLLTIASLSAAADAVECPLNFTVLRQFSQGSAVSRPDFSDECQYIRLGLRLVLSQYLKLTGSFLPPVNSSDSCWNSYQSIVDVTWPNFDIRSSCGFQTGWISQGCMNIRTKSEFERIVPKSALDGVVANCNQSLENGSPCASCTTRLAIVQASFLTGPSIGNVTDCPAYPSIYVAAFVNQFGPTDWGTAKCLFSLHPLSSGDSRSKKRNTVVLVVLICCGVAAAAVAVAGGLFFWRKQGKVKKNDRIGRVETGLGSGLESISASTTLVKFTFDEIKRATRNFSRDNIIGRGGYGNVYKGVLSDDSEVALKRFKNCSAAGDAIFAHEVEVISSVRHVNLVALRGYCIATTPMEGHQRIIVCDLMKNGSLYDHLFGFSDKRLSWPIRQKIALGTARGLAYLHYGAQPAIIHRDIKASNILLDENFDPKVADFGLAKFTPEGMTHLSTRVAGTMGYVAPEYALYGQLTERSDVYSFGVVLLELLSGRKALGVRSHDSQPFLVTDWAWSLVREQKAMDVIEEGMPELGSPEVVEKYVLIAVLCSHPQLYARPTMDQVVKMLETELSVPSIPERPIPLVADIDEIERSMSSSGSAQHSGSVEIGPRRRGRERESSGDMAAARPPKTPMKAGRLPVGLFAAQCEECFKWRLISTQEEYEDIRSKMIEEPFTCHRKTDTSCNDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFSKFDAYYVTPTGKTVRSSTEMLAFVEANPQYKDIPLSSFSFAVPKVMEETVPESILKEGLNSSSVKRYKKTKNESSFPY 800
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5800438 5812180 + ClCG09G006710.2 Cla09g00620 280040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00620 800 ProSitePatterns Serine/Threonine protein kinases active-site signature. 416 428 IPR008271 GO:0004672|GO:0006468
Cla09g00620 800 SMART serkin_6 291 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g00620 800 Pfam CW-type Zinc Finger 643 688 IPR011124 GO:0008270
Cla09g00620 800 PANTHER OS01G0750732 PROTEIN 19 605 - -
Cla09g00620 800 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RKF3-RELATED 19 605 - -
Cla09g00620 800 Gene3D - 642 689 - -
Cla09g00620 800 CDD MeCP2_MBD 701 773 - -
Cla09g00620 800 Gene3D Phosphorylase Kinase; domain 1 263 370 - -
Cla09g00620 800 MobiDBLite consensus disorder prediction 591 631 - -
Cla09g00620 800 MobiDBLite consensus disorder prediction 607 622 - -
Cla09g00620 800 Pfam SPARK 22 161 IPR043891 -
Cla09g00620 800 Gene3D - 691 798 - -
Cla09g00620 800 SMART TAM_2 699 772 IPR001739 GO:0003677
Cla09g00620 800 SUPERFAMILY DNA-binding domain 679 772 IPR016177 GO:0003677
Cla09g00620 800 Pfam Protein kinase domain 292 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g00620 800 ProSiteProfiles Protein kinase domain profile. 291 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g00620 800 SUPERFAMILY Protein kinase-like (PK-like) 268 567 IPR011009 -
Cla09g00620 800 CDD STKc_IRAK 297 567 - -
Cla09g00620 800 ProSitePatterns Protein kinases ATP-binding region signature. 297 319 IPR017441 GO:0005524
Cla09g00620 800 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 697 767 IPR001739 GO:0003677
Cla09g00620 800 ProSiteProfiles Zinc finger CW-type profile. 636 691 IPR011124 GO:0008270
Cla09g00620 800 Gene3D Transferase(Phosphotransferase) domain 1 372 581 - -
Cla09g00620 800 Pfam Methyl-CpG binding domain 706 768 IPR001739 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01034 Cla-Chr5:10617308 Cla09g00620 Cla-Chr9:5800438 5.62E-112 dispersed
Cla09g00620 Cla-Chr9:5800438 Cla10g02086 Cla-Chr10:36548099 8.32E-79 dispersed
Cla11g01122 Cla-Chr11:22911928 Cla09g00620 Cla-Chr9:5800438 3.75E-33 dispersed
Cla09g00620 Cla-Chr9:5800438 Cla11g01693 Cla-Chr11:30524384 4.21E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80794 PF00069 Pkinase 1.20E-40 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00620 - - csv:101222675 1104.35