Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00676 ATGGATTTAACAAATGGGGGCGAGGCCGGCAACGCTCCAGTAGCTAAGAATTCGAGTCATCAAGTATCTGATATTGTTTCCGGAAAGTCGAGCAATACCCAAGAGAAGGATTTGGGTTCAAAATTGGGGACAGGAAGCAAAAGCAATAGGGATATGGTATTTCGTGCTGATAAGATTGATTTCAAGAGTTGGGATATTCAGCTGGAGAAGCACTTGAGCAGGGCTTGGTCAAGGGACAGGGAAGTGCCTGCTAAAAAGGAAGAATGGGAGATTGACTTGTCTAAACTTGATATCAGATATGTTAAAGCTCATGGAACTTATGGTACTATTTACAGAGGAAGCTATGATGGCAATGATGTTGCAGTGAAAGTGCTTGATTGGGGGGAGGATGGTGTTTCCTCAGTTGCTGAAATTGCTGCTCTTCGAACATCTTTTCGCCAGGAAGTGGCTGTATGGCATAAGCTTGACCATCCCAATGTTGCAAAGTTTTATGGAGCATCAATGGGGACGTCCAACCTTAAAATACCTCCCAAGAGCTCATCATTCGACAGTAACCAATCTTTTCCTTCAAGGGCTTGCTGCGTTGTTGTTGAGTATCTTCCAGGTGGAACACTAAAGAGCTTTTTAATCAAAAATAGGAAAAGGAAACTTGCATTTAAGGTTGTGATTCAACTTGCTTTGGATCTTTCTAGAGGTTTAAGTTATCTACACTCCAAAAAGATTGTACACCGTGATATTAAAACAGAGAATGTGCTGCTAGATGCTCAGAAGACTCTGAAAATTGTTGATTTTGGCGTTGCCCGGGTTGAAGCACAGAACCCAAGGGATATGACTGGAGAGACTGGCACCCTTGGTTACATGGCCCCAGAGGTCCTTGATGGTAAACCTTATAATCGGAAATGTGATGTCTACAGTTTTGGTATATGTTTGTGGGAAACGTATTGCTGCGATATGCCTTACCCAGATCTCAGTTTTGCTGAAGTGTCATCTGCAGTTGTGCGACAGAATTTACGACCGGATATCCCTAGATGCTGCCCGAGTTCGTTCGCAAATATCATGAAAAGATGTTGGGACGCAAATCCAGAAAGGCGACCTGACATGGACGAGGTCGTAAAATTGTTGGAAGCCATTGATACAAGTAAAGGGGGTGGCATGATTACTGAAGATCAGATTAGTTGTTTCTGTTTCCGCAAGCCTCGTGGTCCATAA 1209 43.34 MDLTNGGEAGNAPVAKNSSHQVSDIVSGKSSNTQEKDLGSKLGTGSKSNRDMVFRADKIDFKSWDIQLEKHLSRAWSRDREVPAKKEEWEIDLSKLDIRYVKAHGTYGTIYRGSYDGNDVAVKVLDWGEDGVSSVAEIAALRTSFRQEVAVWHKLDHPNVAKFYGASMGTSNLKIPPKSSSFDSNQSFPSRACCVVVEYLPGGTLKSFLIKNRKRKLAFKVVIQLALDLSRGLSYLHSKKIVHRDIKTENVLLDAQKTLKIVDFGVARVEAQNPRDMTGETGTLGYMAPEVLDGKPYNRKCDVYSFGICLWETYCCDMPYPDLSFAEVSSAVVRQNLRPDIPRCCPSSFANIMKRCWDANPERRPDMDEVVKLLEAIDTSKGGGMITEDQISCFCFRKPRGP 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6423803 6427763 - ClCG09G007310.1 Cla09g00676 280096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00676 402 SMART serkin_6 96 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g00676 402 MobiDBLite consensus disorder prediction 11 44 - -
Cla09g00676 402 Gene3D Transferase(Phosphotransferase) domain 1 200 391 - -
Cla09g00676 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
Cla09g00676 402 CDD STKc_MAP3K-like 103 374 - -
Cla09g00676 402 ProSiteProfiles Protein kinase domain profile. 96 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla09g00676 402 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 22 395 - -
Cla09g00676 402 PANTHER KINASE ATMRK1, PUTATIVE-RELATED 22 395 - -
Cla09g00676 402 Pfam Protein tyrosine and serine/threonine kinase 104 374 IPR001245 GO:0004672|GO:0006468
Cla09g00676 402 PRINTS Tyrosine kinase catalytic domain signature 235 253 IPR001245 GO:0004672|GO:0006468
Cla09g00676 402 PRINTS Tyrosine kinase catalytic domain signature 197 210 IPR001245 GO:0004672|GO:0006468
Cla09g00676 402 PRINTS Tyrosine kinase catalytic domain signature 301 323 IPR001245 GO:0004672|GO:0006468
Cla09g00676 402 PRINTS Tyrosine kinase catalytic domain signature 345 367 IPR001245 GO:0004672|GO:0006468
Cla09g00676 402 Gene3D Phosphorylase Kinase; domain 1 84 176 - -
Cla09g00676 402 SUPERFAMILY Protein kinase-like (PK-like) 78 374 IPR011009 -
Cla09g00676 402 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01655 Cla-Chr6:30061814 Cla09g00676 Cla-Chr9:6423803 2.33E-176 dispersed
Cla09g00676 Cla-Chr9:6423803 Cla10g01357 Cla-Chr10:28613891 0 dispersed
Cla05g00519 Cla-Chr5:4824442 Cla09g00676 Cla-Chr9:6423803 4.72E-150 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80795 PF07714 PK_Tyr_Ser-Thr 1.30E-57 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00676 - - csv:101207522 768.459