Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00680 ATGGGTAACGCCGATTACGTGTACCCATCATCCACGGCAGCAGGGGATGGCGGCGAGTGCATGCACAGGGCGGCGATTCCGCCGGCGCAGCCGTTCGTGAAGTCGCTGAAGAACGGTCTGAAGGAGACATTCTTCCCGGACGACCCGCTCCGGCAGTTCAAGAATCAGCCGGCGGGAAGGAAGATAATTCTGGGTTTGCAGTACTTTTTTCCTGTGGTGGAATGGGGGCCGCGCTATAATTTAGGGCTTCTGAAATCGGATCTTATCTCTGGAATCACCATTGCTAGCCTCGCCATTCCTCAGGGCATTAGCTACGCAAAGCTTGCTAACTTGCCTCCTATACTCGGCCTCTATTCGAGTTTTATTCCGCCGTTAATTTATGCGATGATGGGAAGCTCAAAGGACTTGGCCGTCGGAACAGTGGCAGTGGCGTCACTTCTGATTAGCTCAATGTTAGGAGCAGAGGTTAACCCTGTTCAAAACCCCACTCTTTATCTCCATCTTGCTTTCACCGCGACTTTCTTCGCCGGAGTCTTCCAAGCCTCCTTAGGGCTCTTAAGGCTAGGGTTCATTGTTGATTTCTTGTCACATGCAACCATTGTTGGGTTCATGGCGGGCGCTGCCACGGTGGTGTGCCTACAGCAACTCAAAGGCATCCTAGGGCTAACCCATTTCACCCACGCGACCGACCTCGTTTCCGTCCTCCGCTCCGTCTTCTCCCAAGTTCACCAGAGCAAGAAAAAGCCAAAGTTCTTCTGGATATCAGCAATGGCACCTTTGACCTCAGTGATTTTAGGAAGCCTTCTAGTGTTTCTTACTCACGCTGAAAAACACGGCGTCGAAGTGATTGGAGAATTGAAGAAAGGGCTAAATCCAGTGTCAATAACAAATTTGGTGTTTGTGTCACCTTATCTTTCAACTGCCATTAAAACTGGCATCATCACTGGCGTCATAGCTCTTGCGGAAGGAATAGCAGTTGGAAGAAGCTTTGCGATGTTCAAGCATTACAACATCGATGGCAACAAAGAAATGGTAGCCATTGGCACAATGAACATGGTCGGCTCTTGCTTCTCTTGCTATCTCACAACAGGAAACCCCATTCATTTTGACTTCGAAATCGCCACACTTGCAGGGCCCTTTTCGCGATCGGCTGTGAATTACAATGCAGGATGCAAAACCGCGGTATCAAACGTGGTAATGGCGATTGCAGTGATGTTGACATTGTTATTCTTGACTCCTCTCTTCCACTACACTCCTCTGGTGGTGCTTTCTTCCATCATCATTTCCGCCATGCTTGGCCTCATTGATTACGAAGCTGCTATTCACTTGTGGAAGGTTGATAAATTTGATTTCCTTGTCTGCATTGGCGCTTATGCTGGTGTTGTCTTTGCCAGTGTTGAAATTGGCTTGGTCATTGCGGTATGTTCTGACTTCTTTCGTGTTTTTGGGTCTGCCCGTAAGGTGGTGATATCTCTGCTTAGACTACTTTTGTTCGTTGCGAGGCCGAGGACGCTTGTGCTTGGAAACCTTCCCAATTCCACAGTTTACAGGAACGTAGAGCAGTACCCGAATGCCGATCATGTTCCTGGCATTCTCATACTTGAGATTGACGCTCCCATTTACTTTGCTAATTCCAGCTACTTGAGAGAAAGGATTATAAGGTGGGTTGATGAAGAGGAAGATAGGATAAAAGCTTCGGGTGAAAGTACCTTACAATATGTCGTATTGGACATGAGTGCTGTTGGCAACATTGATACAAGTGGAATAAGTATGTTTGAAGAGATGAAGAAGATTTTAGAAAGAAGGGGATTGAAGATAGTTTTGGCCAACCCTGGAGCTGAGGTAATGAAGAAGCTGGACAAGGGCAAGTTCATTGAGACCCTTGGACACGAATGGATCTATCTAACAGTTGCCGAAGCTGTAGCGGCCTGCAACTATATGCTTCACTCTTGCAAACCGAACCCTGTAACTGATGAGAAAGCTGAGCCATGGAACAATGTGTAA 2004 47.6 MGNADYVYPSSTAAGDGGECMHRAAIPPAQPFVKSLKNGLKETFFPDDPLRQFKNQPAGRKIILGLQYFFPVVEWGPRYNLGLLKSDLISGITIASLAIPQGISYAKLANLPPILGLYSSFIPPLIYAMMGSSKDLAVGTVAVASLLISSMLGAEVNPVQNPTLYLHLAFTATFFAGVFQASLGLLRLGFIVDFLSHATIVGFMAGAATVVCLQQLKGILGLTHFTHATDLVSVLRSVFSQVHQSKKKPKFFWISAMAPLTSVILGSLLVFLTHAEKHGVEVIGELKKGLNPVSITNLVFVSPYLSTAIKTGIITGVIALAEGIAVGRSFAMFKHYNIDGNKEMVAIGTMNMVGSCFSCYLTTGNPIHFDFEIATLAGPFSRSAVNYNAGCKTAVSNVVMAIAVMLTLLFLTPLFHYTPLVVLSSIIISAMLGLIDYEAAIHLWKVDKFDFLVCIGAYAGVVFASVEIGLVIAVCSDFFRVFGSARKVVISLLRLLLFVARPRTLVLGNLPNSTVYRNVEQYPNADHVPGILILEIDAPIYFANSSYLRERIIRWVDEEEDRIKASGESTLQYVVLDMSAVGNIDTSGISMFEEMKKILERRGLKIVLANPGAEVMKKLDKGKFIETLGHEWIYLTVAEAVAACNYMLHSCKPNPVTDEKAEPWNNV 667
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6486960 6495314 - ClCG09G007350.1 Cla09g00680 280100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00680 667 Pfam STAS domain 522 640 IPR002645 -
Cla09g00680 667 ProSitePatterns SLC26A transporters signature. 113 134 IPR018045 GO:0008271|GO:0008272
Cla09g00680 667 PANTHER SULFATE TRANSPORTER 245 660 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cla09g00680 667 PANTHER SULFATE TRANSPORTER 3.1 20 244 IPR030311 GO:0008272|GO:0009507|GO:0015116
Cla09g00680 667 Pfam Sulfate permease family 84 244 IPR011547 GO:0016021
Cla09g00680 667 Pfam Sulfate permease family 246 455 IPR011547 GO:0016021
Cla09g00680 667 PANTHER SULFATE TRANSPORTER 3.1 245 660 IPR030311 GO:0008272|GO:0009507|GO:0015116
Cla09g00680 667 ProSiteProfiles STAS domain profile. 521 644 IPR002645 -
Cla09g00680 667 SUPERFAMILY SpoIIaa-like 523 645 IPR036513 -
Cla09g00680 667 CDD STAS_SulP_like_sulfate_transporter 522 637 - -
Cla09g00680 667 Gene3D STAS domain 501 647 IPR036513 -
Cla09g00680 667 PANTHER SULFATE TRANSPORTER 20 244 IPR001902 GO:0015301|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01018 Cla-Chr6:21746864 Cla09g00680 Cla-Chr9:6486960 0 dispersed
Cla06g01019 Cla-Chr6:21779404 Cla09g00680 Cla-Chr9:6486960 0 dispersed
Cla09g00202 Cla-Chr9:1986567 Cla09g00680 Cla-Chr9:6486960 0 dispersed
Cla09g00680 Cla-Chr9:6486960 Cla11g01499 Cla-Chr11:28656522 0 dispersed
Cla05g00514 Cla-Chr5:4768696 Cla09g00680 Cla-Chr9:6486960 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00680 K17471 - csv:101222260 1167.91