Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00685 ATGTTTGCTTCAACAATGTCCAATTCAACTTCTTTGTCTGAAGAAGCTAGTGTCTCTTCTACCACAAGAGTCCACCCTGAATTCACCTGCTTAAACCCTCTCCTTCCATCTTTTTCTGATGTTCACCACCCTCCACAAAAGCTCAAGAAGAAACGAAGCCTCCCCGGTAACCCAGACCCGGATGCGGAAGTGATAGCGCTTTCGCCAAAAACACTACTAGCAACAAATAGATTTGTGTGTGAGATTTGCAACAAGGGTTTCCAAAGGGATCAAAATTTGCAGTTGCATAGGAGAGGGCACAATTTACCATGGAAATTGAAGCAAAGAAACAGCAAAGAAGTGAAGAAGAAAGCCTATGTTTGTCCAGAACCAAGTTGTGTTCATCATCATCCTTCAAGAGCATTAGGAGATCTCACAGGAATCAAAAAACATTACTGCAGAAAACATGGTGAAAAGAAATGGAAATGTGATAAATGCTCCAAAGTTTATGCTGTTCAATCTGATTGGAAAGCTCACTCCAAAACTTGTGGCACTAGGGAATATAGATGTGATTGTGGAACCCTTTTCTCCAGGAAGGATAGCTTCATAACCCATAGAGCTTTTTGTGATGCATTGGCTGAAGAAAGTGCAAGGCTCTCAGCTAACCAATTGGCCATGGCTGCCGCTGCCTCCGGTGCCACTGATATCAACATAAACTCATCTTCAACCACCGCCGCCGACCAGTCGCTCTTTCCTTATGGTAATCACCATCAATTCTCGAACTCGACACTATCACTACCACCACCTCCACCTCTGTCTCAAACACACATGTCTTTAAACCCTTGGGATCATCCCCAAAACCCTAACCCTAATCACACCCTCCAAATCATTAAGCCAGAGGATTCAAATTCTCATTCTTCCCATTCTCATAATTTTCACCAAATTCCAAATTTGCCCCTCTCCAATTCCTCCTCTGCCAACAACCCTTTTGGTCTAATTCAAGACCACCACCACCAAAAGGTAGGCTCATCCTCCTCCTCTTCCATGATAACCTCACCCTTCAGGAACCTCCACGTGTCAGTGCACCCGGGATCAAATGTTGCCACGTCAGCTCACCTATCAGCAACAGCCCTACTCCAAAAGGCAGCGACAGTTGGCGTTGGCGCTGCAAAATCCGGTCACCATCAACCCGAGTCAGTAGGCCACATGACTCACTTCAACATGCAAAACATCCCCGAGTTCGGTCCACCGAATCACATTGAATCACTGAGTCAACTTGATCCTGACTATGCCACGTGGCAGAAGACTGACCGGCTGACCAGGGACTTTCTCGGTCTGACTGGAGATGGGAACAGTGGCGTTGGTAGTGGTGGTGGTTCTGGCGGCAGTGGAGTGGTGCAAGTTAGCATGAGCGTTAAGGATATGCTAACGTACGCAAGTGGATTGGAGATGTTTAAGCCTCATAACAATAATAATAGTAGTAATAATAATTTTGGATATGCGGAGCCAGCTGCCAATGAAACTTGGGGAGATTGTTGA 1518 45.78 MFASTMSNSTSLSEEASVSSTTRVHPEFTCLNPLLPSFSDVHHPPQKLKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKKAYVCPEPSCVHHHPSRALGDLTGIKKHYCRKHGEKKWKCDKCSKVYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLAMAAAASGATDININSSSTTAADQSLFPYGNHHQFSNSTLSLPPPPPLSQTHMSLNPWDHPQNPNPNHTLQIIKPEDSNSHSSHSHNFHQIPNLPLSNSSSANNPFGLIQDHHHQKVGSSSSSSMITSPFRNLHVSVHPGSNVATSAHLSATALLQKAATVGVGAAKSGHHQPESVGHMTHFNMQNIPEFGPPNHIESLSQLDPDYATWQKTDRLTRDFLGLTGDGNSGVGSGGGSGGSGVVQVSMSVKDMLTYASGLEMFKPHNNNNSSNNNFGYAEPAANETWGDC 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6586945 6590745 + ClCG09G007400.1 Cla09g00685 280105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00685 505 Pfam Zinc finger, C2H2 type 78 100 IPR013087 -
Cla09g00685 505 SMART c2h2final6 154 174 IPR013087 -
Cla09g00685 505 SMART c2h2final6 78 100 IPR013087 -
Cla09g00685 505 SMART c2h2final6 119 149 IPR013087 -
Cla09g00685 505 Gene3D Classic Zinc Finger 57 126 - -
Cla09g00685 505 SUPERFAMILY beta-beta-alpha zinc fingers 77 174 IPR036236 -
Cla09g00685 505 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 100 IPR013087 -
Cla09g00685 505 MobiDBLite consensus disorder prediction 483 505 - -
Cla09g00685 505 MobiDBLite consensus disorder prediction 253 325 - -
Cla09g00685 505 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Cla09g00685 505 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 8 489 - -
Cla09g00685 505 MobiDBLite consensus disorder prediction 269 325 - -
Cla09g00685 505 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 8 489 - -
Cla09g00685 505 Gene3D Classic Zinc Finger 147 212 - -
Cla09g00685 505 MobiDBLite consensus disorder prediction 41 62 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g00685 Cla-Chr9:6586945 Cla10g01937 Cla-Chr10:35207330 4.25E-108 dispersed
Cla09g00685 Cla-Chr9:6586945 Cla01g01891 Cla-Chr1:33706688 4.40E-111 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61693 PF00096 zf-C2H2 0.0051 CL0361 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00685 K25870 - csv:101208253 788.489