Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00688 ATGAGCAAATGCGAATCTACTTACCATGAGACTTTACTTCTCAACATCAGCAAAGCTCGAAGGAGATGGAGATTTGCCTATGCAGCAATATATTCAATCCGGGCCATGCTTTCTGTTGCAGTGACAAAAAGAAATGGCCATTACAGTTCACTCAACTTTGAGAACTGGCAGGAAGATTGTTATGAGGAACAAATTATCTGCACCAAAGATGATCAGAAGAAGCTGATTGAAATGGTGAAGAACAAAGACAAAGAAGCTTATCATGAGCTTGGAGAAGGTGCAACAATTGCAGCTTCTCTTGGAACGAATCCGGAGAATGGAATCAAGGACAATAGTGATATCTTGAATGAACAACGTCAAATATTTGGTTCTAACACTTACCACAAGCGGCCTCGGAAGAGTTTCTTTCATTTTGTAGTGGAAGCTTTCAAGGACACCACCATCCTCATTTTACTTGTATGTGCGGCTCTGGCGCTTGGGTTTGGAATAAAAGAACATGGAGTTCAAGAAGGATGGTATGAAGGAGGGAGCATATTTGTAGCTGTTGCTTTGGTAGTTGCTGTGTCAGCAATTAGTAACTTCAGACAGGAGGTTCAATTCGAGAAGTTGTCGAAAATAAGTAACAACATCAAAGTGGAGGTAGTACTAAGAGATGGAAGGCGCATACAAGTTTCCATATTCGATATTGTGGTTGGAGATGTCGTGGTTCTAAAGCTTGGGGACCAAATTCCAGCTGATGGATTGTTCTTGAGCGGCCATTCTTTGCAGGTGGATGAGTCAAGCATGACAGGAGAAAGCGATCATGTGGAACTCAATACAACAGAGAACCCCTTCTTGTTGTCTGGAACAAAAGTAGTAGATGGCTATGGTCAGATGCTGGTGACATCAGTGGGAATGGACACAGCATGGGGTGAGATGATGAGTTCCATATCTCGGGATTCTGAGGAGCAAACACCATTGCAAGTTCGTCTTAACAAATTAACCACTTCTATAGGAAAGGTAGGCCTCTCAGTTGCTTTGCTGGTCCTTGTTGTCATGTTAGCACGCTATTTCACTGGAAACACAAAGGATGATTTTGGGAACACAGAGTACAATGGTCGAAAAACGGACATAGATGATGTGCTTAATGCAATTATCCGTATAGTTGCTGCTGCAGTTACCATAGTAGTGGTTGCAATCCCTGAAGGCTTACCATTGGCTGTGACACTAACACTTGCTTACTCTATGAAGAGAATGATGGCAGATCAGGCAATGGTGAGGAAACTGTCGGCTTGTGAAACAATGGGATCGGCAACTGTGATTTGCACTGACAAAACAGGTACTTTGACATTAAACCAAATGAAAGTAACCAAATTCTGGCTTGGCCAAGAGTTCATTGAGGAAGAAAACTCTTCCAATACCATAGCAGAGGCTGTTCATGAGTTGATAAATCAAGGAGTTGGCTTGAACACAACTGGTAGTGTCTATCGATCTTCACCAGAATCCAAAACTGAAATCTCTGGTAGTCCAACTGAGAAAGCGATTCTATCTTGGGCGGTCACAGAATTCGGTATGGACATGGAGAAGTTGAAGAAGTCATATGCCATTCTTCATGTGGAAACCTTCAACTCAGAGAAGAAAAGAAGTGGGGTTTTGGTGAGAAAATTGGCTGACAACACAATCCATCAGCATTGGAAAGGAGCTGCTGAGATGATACTCTCAATGTGTTCAAGTTACTTTGAAAGGAATGGGAAAACATATGACTTGGATATTGAGAACCGAAAAAAACTTGAGAACATTATCCAAGGAATGGCAGCAAGTAGCCTAAGATGCATTGCCTTTGCTTATAAACAAATCTCAGAGGACGAGGAAAAAAATGGCATACCAAACGTCTCAAACTCGAAACAAGATGGCTATACATTAATGGGAATAGTTGGCATTAAAGATCCATGTAGGCCAGGGGTGAAGAAAGCCGTGGAAACATGTAAATCAGCTGGAGTTTCCATTAAGATGATAACAGGAGACAACATTTTCACAGCAAAAGCTATAGCCACAGAATGTGGAATACTAGATTTTGATCACAACACTGCAAGCAGAGGCGAAGTAATAGAAGGTTCCGAGTTCCGAAACTACTCGAGTGAAGAGAGACTGCGGAGAGTTGATCAAATCAAGGTAATGGCAAGATCCACTCCATTTGACAAGCTTTTGATGGTTCAATGCTTGAAACAGAAAGGCCATGTGGTAGCAGTAACTGGAGACGGCACAAATGATGCACCGGCTCTAAAAGAAGCTGACATAGGACTTTCCATGGGCATTGAAGGCACTGAGGTTGCAAAAGAGAGTTCAGACATTGTTATCTTGGATGATAACTTCACCACAGTAGCCACAGTCTTGAGGTGGGGAAGATGTGTATATAACAACATCCAAAAATTCATCCAATTTCAATTGACGGTCAATGTCGCAGCTCTTACAATTAACTTTATAGCAGCAGTATCAGCCGGAGAGGTTCCTTTAACAGCAGTCCAATTATTGTGGGTGAATCTCATAATGGATACATTGGGTGCTCTTGCACTTGCTACTGAGAGACCCAATGATGAATTAATGCACAAGGCTCCCGTGGGAAGAACTGAGCCCCTAATAACAAATATCATGTGGAGAAACCTATTAGCTCAAGCTCTATACCAAATAACAATACTCTTAATTTTCCAGTTCCAAGGAAGCACCATCTTCAAAGTAAGTGCAGAGGTAAACGATACACTAATCTTCAACATTTTTGTCCTCTGCCAAATCTTTAATGAGTTCAACTCAAGAAAACTAGAGAAACGGAACGTCTTTGAAGGCATCCTAAAGAATCATTTATTTCTAGGGATCGTGGGAGTAACACTTGTTCTACAAGTTGTTATGGTAGAATTCTTAAAGAAATTTGCAAATACAGTGAATCTAAATGGTTGGCAGTGGGGACTTTGCATTGCAATTGCAGCAATTTCTTGGCCTATTGGTTGGATTGTCAAATTCTTGCCCGTTTCTGATAAGCCTTTCCTTAGCTACTTCAAATGGTTTTAA 3042 41.42 MSKCESTYHETLLLNISKARRRWRFAYAAIYSIRAMLSVAVTKRNGHYSSLNFENWQEDCYEEQIICTKDDQKKLIEMVKNKDKEAYHELGEGATIAASLGTNPENGIKDNSDILNEQRQIFGSNTYHKRPRKSFFHFVVEAFKDTTILILLVCAALALGFGIKEHGVQEGWYEGGSIFVAVALVVAVSAISNFRQEVQFEKLSKISNNIKVEVVLRDGRRIQVSIFDIVVGDVVVLKLGDQIPADGLFLSGHSLQVDESSMTGESDHVELNTTENPFLLSGTKVVDGYGQMLVTSVGMDTAWGEMMSSISRDSEEQTPLQVRLNKLTTSIGKVGLSVALLVLVVMLARYFTGNTKDDFGNTEYNGRKTDIDDVLNAIIRIVAAAVTIVVVAIPEGLPLAVTLTLAYSMKRMMADQAMVRKLSACETMGSATVICTDKTGTLTLNQMKVTKFWLGQEFIEEENSSNTIAEAVHELINQGVGLNTTGSVYRSSPESKTEISGSPTEKAILSWAVTEFGMDMEKLKKSYAILHVETFNSEKKRSGVLVRKLADNTIHQHWKGAAEMILSMCSSYFERNGKTYDLDIENRKKLENIIQGMAASSLRCIAFAYKQISEDEEKNGIPNVSNSKQDGYTLMGIVGIKDPCRPGVKKAVETCKSAGVSIKMITGDNIFTAKAIATECGILDFDHNTASRGEVIEGSEFRNYSSEERLRRVDQIKVMARSTPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIEGTEVAKESSDIVILDDNFTTVATVLRWGRCVYNNIQKFIQFQLTVNVAALTINFIAAVSAGEVPLTAVQLLWVNLIMDTLGALALATERPNDELMHKAPVGRTEPLITNIMWRNLLAQALYQITILLIFQFQGSTIFKVSAEVNDTLIFNIFVLCQIFNEFNSRKLEKRNVFEGILKNHLFLGIVGVTLVLQVVMVEFLKKFANTVNLNGWQWGLCIAIAAISWPIGWIVKFLPVSDKPFLSYFKWF 1013
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6679601 6684596 - ClCG09G007430.2 Cla09g00688 280108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00688 1013 PRINTS P-type cation-transporting ATPase superfamily signature 768 780 - -
Cla09g00688 1013 PRINTS P-type cation-transporting ATPase superfamily signature 435 449 - -
Cla09g00688 1013 PRINTS P-type cation-transporting ATPase superfamily signature 744 763 - -
Cla09g00688 1013 PRINTS P-type cation-transporting ATPase superfamily signature 658 668 - -
Cla09g00688 1013 PRINTS P-type cation-transporting ATPase superfamily signature 258 272 - -
Cla09g00688 1013 PRINTS P-type cation-transporting ATPase superfamily signature 636 647 - -
Cla09g00688 1013 Pfam Cation transporter/ATPase, N-terminus 95 157 IPR004014 -
Cla09g00688 1013 Gene3D - 115 311 - -
Cla09g00688 1013 SUPERFAMILY HAD-like 433 849 IPR036412 -
Cla09g00688 1013 SMART Cation_ATPase_N_a_2 86 163 IPR004014 -
Cla09g00688 1013 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 442 640 IPR023299 GO:0000166
Cla09g00688 1013 SFLD p-type atpase 417 797 IPR044492 -
Cla09g00688 1013 Gene3D - 445 643 IPR023299 GO:0000166
Cla09g00688 1013 Pfam Cation transporting ATPase, C-terminus 829 999 IPR006068 -
Cla09g00688 1013 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 377 477 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla09g00688 1013 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 715 824 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla09g00688 1013 CDD P-type_ATPase_Ca_PMCA-like 115 877 - -
Cla09g00688 1013 SUPERFAMILY Calcium ATPase, transmembrane domain M 94 1001 IPR023298 -
Cla09g00688 1013 Gene3D - 141 998 - -
Cla09g00688 1013 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 57 1001 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Cla09g00688 1013 PRINTS H+-transporting ATPase (proton pump) signature 590 608 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla09g00688 1013 PRINTS H+-transporting ATPase (proton pump) signature 776 801 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla09g00688 1013 PRINTS H+-transporting ATPase (proton pump) signature 744 760 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla09g00688 1013 PANTHER CALCIUM-TRANSPORTING ATPASE 15 988 - -
Cla09g00688 1013 Pfam haloacid dehalogenase-like hydrolase 433 758 - -
Cla09g00688 1013 Gene3D - 432 789 IPR023214 -
Cla09g00688 1013 PANTHER CATION TRANSPORTING ATPASE 15 988 - -
Cla09g00688 1013 ProSitePatterns E1-E2 ATPases phosphorylation site. 437 443 IPR018303 -
Cla09g00688 1013 SFLD C1.7: P-type atpase like 417 797 - -
Cla09g00688 1013 SUPERFAMILY Calcium ATPase, transduction domain A 214 309 IPR008250 -
Cla09g00688 1013 Pfam E1-E2 ATPase 212 413 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02106 Cla-Chr5:32672272 Cla09g00688 Cla-Chr9:6679601 0 dispersed
Cla09g00688 Cla-Chr9:6679601 Cla10g01496 Cla-Chr10:30188099 0 dispersed
Cla08g01633 Cla-Chr8:28898171 Cla09g00688 Cla-Chr9:6679601 4.02E-92 transposed
Cla09g00143 Cla-Chr9:1449087 Cla09g00688 Cla-Chr9:6679601 6.55E-151 transposed
Cla11g01128 Cla-Chr11:22983121 Cla09g00688 Cla-Chr9:6679601 0 transposed
Cla02g01629 Cla-Chr2:31045708 Cla09g00688 Cla-Chr9:6679601 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00688 K01537 - csv:101220140 1784.62