Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla09g00695 | ATGGCGAACAATCATTCCGATACTCCGGCTGATGATTTCCTCGAGCAGATTCTTGGGATTTCCCCTTTTGGTTCATCGGACCAAGGGTTAGCTGGAACTGACGGCGGATTGGCCGGAGCTGCTGCTGCTGCGGCAGCGGCGGCGGCTCAGGGTCAGGCTCCGATGATGCTTCAGCTTAGCTCCGGCGACGGTGGTGGTCATATCGCTACGATTGGGAGTGGTAGTGTCGGTGGAGCTGGGTTTCATGGCGGACCCCCTTTTCCTCTGGGGTTGAGCTTGGACCAAGGGAAGAGTGGGTTTCTTAAGGCTGAGGAAGCCTCTGGAAGTGGAAAGCGGTATTGTGGTGATGTTGTTGATGTTCGAGCTTCGTCTGTAAAAAATGTTTTTCAAGGCCAACAAATGCATGCTACTATGGGTGCAGCCCCACATCCACCAGCAATGCGCCCTAGGGTACGTGCAAGACGAGGACAGGCGACTGATCCACATAGCATTGCAGAGCGGTTACGAAGAGAAAGGATTGCAGAGAGAATTAGGGCTTTGCAGGAGCTTGTTCCGAGTGTCAATAAGACGGATAGAGCTGCAATGCTCGATGAAATAGTGGACTACGTAAAGTTCCTACGTCTCCAAGTGAAGGTTCTGAGCATGAGTAGATTGGGTGGAGCTGGTGCTGTGGCACCACTTGTAACGGATATTCCACTATCATCAGTTGAGGAAGAAGGAAGTGAAGGTGGTAGGAACCAACCGGCATGGGAGAAGTGGTCGAACGATGGTACAGAGAGACAAGTTGCTAAACTCATGGAAGAAAATGTGGGAGCCGCAATGCAATTCCTTCAATCAAAGGCACTCTGCATCATGCCCATCTCGTTGGCTTCAGCGATTTATCACACGCAACCACCTGATAGCTCGAGCGTTGTGAAGCCAGAGAGTAACCCTCCTCCATAG | 942 | 51.8 | MANNHSDTPADDFLEQILGISPFGSSDQGLAGTDGGLAGAAAAAAAAAAQGQAPMMLQLSSGDGGGHIATIGSGSVGGAGFHGGPPFPLGLSLDQGKSGFLKAEEASGSGKRYCGDVVDVRASSVKNVFQGQQMHATMGAAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSEGGRNQPAWEKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYHTQPPDSSSVVKPESNPPP | 313 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 6741355 | 6745100 | + | ClCG09G007500.1 | Cla09g00695 | 280115 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla09g00695 | 313 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 7 | 301 | - | - | |
| Cla09g00695 | 313 | SMART | finulus | 163 | 212 | IPR011598 | GO:0046983 | |
| Cla09g00695 | 313 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 155 | 216 | IPR036638 | GO:0046983 | |
| Cla09g00695 | 313 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 157 | 206 | IPR011598 | GO:0046983 | |
| Cla09g00695 | 313 | PANTHER | TRANSCRIPTION FACTOR UNE12-RELATED | 7 | 301 | - | - | |
| Cla09g00695 | 313 | Pfam | Helix-loop-helix DNA-binding domain | 162 | 206 | IPR011598 | GO:0046983 | |
| Cla09g00695 | 313 | MobiDBLite | consensus disorder prediction | 237 | 256 | - | - | |
| Cla09g00695 | 313 | MobiDBLite | consensus disorder prediction | 138 | 161 | - | - | |
| Cla09g00695 | 313 | Gene3D | - | 152 | 214 | IPR036638 | GO:0046983 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla03g01576 | Cla-Chr3:31538515 | Cla09g00695 | Cla-Chr9:6741355 | 8.95E-96 | dispersed | |
| Cla09g00695 | Cla-Chr9:6741355 | Cla05g00770 | Cla-Chr5:7352450 | 4.33E-22 | dispersed | |
| Cla09g00695 | Cla-Chr9:6741355 | Cla06g01221 | Cla-Chr6:25394004 | 8.42E-63 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 61695 | PF00010 | HLH | 1.20E-07 | No_clan | Cla | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla09g00695 | - | - | csv:101218718 | 497.278 |