Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00706 ATGATGGAAGAGGTCGAAGAAGCTAATAGGGAAGCTGTTGAGAGTTGTCATAAAGTGTTGAATCTCTTGACTGTGGCTTCCTCGTCTCAAGATCAGTTGAAGCTTAGGAGTCGTTTAATGGCGGAAACTGGAGACGCTGTGTTTAAGTTTAGGAAAGTTTTGTGTCTTCTTGATTCTTCTGGGTTGGGTCATGCAAGGGTCAGGAAAAAGAAGGTCAAGAACTTTTTGTTTAATTCCTCTTCTTCCCCTTTTCCTCTTCCCCAATCTTTGTTCTTAGAAACTTCTTCCCCTAATTGCAGAATGGACCTTCTCCAGGGCAGGAATTTGCAGATGGGTCCTCTTTGTTTGGGGAACCCATCTTTGGAATTGAACTCTAATGCCAAAAGTTGTTCAACCCAACAAATACAATCTCAATCTGCTGCTCTTTATCATCATCATCATCATCATCACTTGCTTCAGAACAGGGTGTTGTTGAACAATAATCCTAATCCTAATCCTCCACAGCCTGAAATGATGTATCTTAGGAGCAATAATGGCATTAACTTAAATTTTGATAGCTCTAGTTGCACACAACACACAATGTCATCCACTAGGTCGTTTATATCTTCCTTGAGCATTGATGGGAGTGTGGCTAGCTTGGATGGGAGTGCCTTTCATTTGATCGGGGCACCCCGGTCTTCCGATCAGAATTCGCATTCTAAGAGGAAGTGCAGTGGGAGAGGGGAAGATGGGAGTGTTAAATGTGGAAGCAGTGGGAGATGTCACTGCTCAAAAAAGAGGAAACATAGAGTAAAGCGATCAATTAAGGTGCCCGCGATAAGTAACAAGCTTGCAGATATCCCTCCTGATGATTATTCATGGAGGAAATATGGCCAAAAGCCAATCAAGGGTTCACCTCACCCAAGAGGATACTATAAGTGCAGCAGCATGAGAGGCTGTCCAGCGAGGAAGCACGTCGAGCGGTGTCTCGAGGAACCTTCCATGCTCATTGTTACATATGAAGGTGAACACAACCATCCTAGAATACCTTCTCAACCTGCAAATACTTGA 1050 43.62 MMEEVEEANREAVESCHKVLNLLTVASSSQDQLKLRSRLMAETGDAVFKFRKVLCLLDSSGLGHARVRKKKVKNFLFNSSSSPFPLPQSLFLETSSPNCRMDLLQGRNLQMGPLCLGNPSLELNSNAKSCSTQQIQSQSAALYHHHHHHHLLQNRVLLNNNPNPNPPQPEMMYLRSNNGINLNFDSSSCTQHTMSSTRSFISSLSIDGSVASLDGSAFHLIGAPRSSDQNSHSKRKCSGRGEDGSVKCGSSGRCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPSMLIVTYEGEHNHPRIPSQPANT 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6895715 6898193 - ClCG09G007630.1 Cla09g00706 280126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00706 349 SMART WRKY_cls 281 341 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla09g00706 349 Gene3D WRKY domain 266 343 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla09g00706 349 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 3 349 IPR044810 GO:0003700
Cla09g00706 349 MobiDBLite consensus disorder prediction 222 251 - -
Cla09g00706 349 SUPERFAMILY WRKY DNA-binding domain 279 341 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla09g00706 349 PANTHER WRKY DNA-BINDING PROTEIN 21-RELATED 3 349 - -
Cla09g00706 349 Pfam Plant zinc cluster domain 234 279 IPR018872 -
Cla09g00706 349 ProSiteProfiles WRKY domain profile. 276 342 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla09g00706 349 Pfam WRKY DNA -binding domain 283 340 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00061 Cla-Chr7:678123 Cla09g00706 Cla-Chr9:6895715 5.90E-133 dispersed
Cla09g00706 Cla-Chr9:6895715 Cla03g00810 Cla-Chr3:10213606 5.71E-28 dispersed
Cla09g00705 Cla-Chr9:6879887 Cla09g00706 Cla-Chr9:6895715 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61699 PF03106 WRKY 3.50E-26 CL0274 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00706 - - csv:101216822 598.201