Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla09g00720 | ATGTCAATTGTTAATGATTTGTTTGGTAATTACCAAGAAGATTTCTTGTGGAACAATAATCAGGATGAAAGTTTAATTTCCGGGGAAGAGAATTATTTCAATTACTTGAAAGAGGTGTTGTTTGATGATATTTTTGAGGAGGCGGCCGGAGGAACGACGTCGTCAGATTCGAGTTCGAGTTCGAGTTCGAGTTCTTGTTCGTCTCCAGTGATGCAAGTTAAGGAGGAGATTGAGGAAGGGAGTTTTGGTGACGACAACGTTGTGCAGGAAGATGAATCACGTAAGGAGGATAGGGTTTATCGAGGGGTGCGAAGGAGGCCGTGGGGGAAGTACGCAGCCGAGATTAGGGATTCGACCCGACAAGGGGTGAGGGTGTGGTTGGGGACGTTTGATAGCGCCGAAGCGGCTGCGTTGGCGTATGACCAAGCCGCATTTTGCATGAGAGGAGGGTTAGCCACGCTTAACTTTCCGGTCGAGGTTGTACGAGAGTCACTCCGAGAGATGAAGTACCGGTGGGAGGCTGGGTGCTCGCCGGTCTTGGCGCTTAAGCGGCGCCACTCGATACGGAGGAAGAAGATGGCTGAGGTGGAGAAGATGGAGAAGAAGATGAAGAAGAAGAAGAAGCAAACTGTAGTTGTTTTTGAGGATTTGGGTGTAGAATGGGATGTGGTAGCTGAGCTTATTAGAAACACCATGAAGGAAAGAGGTCTAAGGAAGGCTCCTGGCTGTAGTCGGGTTAACATTAATACAAAGACCCATTGTTTTGATGTTGCTAATAAAACACATCCAAGTTCTTCCAAGTTAGCCGACGACGTTGGTGGTCGAAAGTTGGCCAATGGGGGAGGATCACCGGAGGTTGGCCGACGACAATTATTGGAGTTGGCCACCGAAGTTGGTCGACAGTGGTGGCGACCAGTGTTGACCCACGGCGATCACCTGAGCGTCATACCCACGCACGACCGCCGCCAACCACAGCCAACCGTCGGCCGTCCGCCTCCCTCCGACCGGCTGCCGATCGTCACTCCACCGCGTCAGCCGTCGACGCAAGGAGGAGATGAAGTTATTGACATAGACAGGAAAACACTATTGTTAGAACCAGAGAATAATATTGAAGGGGGATTGTCAGTTCCGGGAAAGGATAGACCGGTGTTTAGACCTCCAGAGAGAAAATCTCATCTAGGCCTTGATGTCCTTGCAAATGCAAAACGGGGAGGATCTAATGACAATGGATTCAAAGTCCCACAACAAAGTATTGCTTCTTTTGTTTCATCAATGGAGGAAGAGGAGACAATTGAATCATCTGGAGTAACTGATTCAGGAAAAGAAGCTGTTTCACGAAAGCATTATGTTAAAAATAGAAATTATCGGGAAATAGCTTCCAATGATTCAAATGAAGGGAGTACTTTAGCTCAAGGTGGAATAGCTGGAGATTCATTTAAGAATCGTAATTCTAGTGAAACTTCGGATTCTAGTGTTATAACTATGTCATCCAAAAGCACACATGTGAGCAGGTATAGGAGCCCTAGACAAGACTACGATAATCATGATAGAGAGAGAAATTTTTTTGACAATGATAGTAGAAGCAATAACAGGCGGGCGAGACATGGGCACAGTTATGATGGTGATGAGCCTTATCATGGGAGATCCCGGTACCAAAGGGACTATGGCAGGGAAACTGAAAGAAAGAGAAGTAGATATGAAAGTTCGAGAAGAACTCCTGGTAGATCTGATTGGGATGATGGTAGATGGGAATGGGAAGAAACACCACGTAGAGATGGCCGCTCTAACTCTAGTAGGCACCATCAACCTTCACCATCCCCAATGTATGTCGGTGCCTCACCAGATGCTCGGTTAGTTTCTCCATGGTTAGGTGGGAACACTCCTAATTCTACTGGTTATTCTGCTTCCCCTTGGGATCAGATCTCTCCTTCTCCAGTTCCAGTGCGTGCCTCTGGATCTTCAGTAAAGTCATCAAGCTCAAGTTATCATTCTAAAACTCACCATCTTAAATTTTCTTCACGAAGTTCACCTTTGTCTGAGGATTCTCAACAAGATTCTCTGACAGACAAGTCTGAGTTAAATGGAACCAAGTATGAGATCAGTGAGAACATGCGTCTGGAGATGGAATACAACTCTGACCGGGCTTGGTATGATAGAGATGAAGGTAATACAATGTTTGATGCTGATAGCTCATCATTTTTCTTTGGAGATGATGCTGCCTTCCAGAAGAAAGAAGCTGAGCTGGCCAAAAGATTGGTCCGTCGAGATGGAACTAAGATGACTCTTGCTCAAAGCAAAAAGCTGTCTCAGCTCACTGCAGATAATGCACAGTGGGAAGACCGACAACTTTTGAGGTCAGGAGCTGTTAGGGGTACTGAGGTGCAAACTGACTTTGACGACGAGGAAGAGCGGAAAGTCATTCTTCTTGTCCATGATACAAAGCCTCCTTTCCTTGATGGAAGAGTTGTTTTCACTAAACAAGCAGAACCAATAATGCCAATAAAAGACCCTACATCAGATATGGCTATTATATCACGCAAAGGATCTACATTGGTGAGGGAAATTCATGAGAAGCAAAATATGAACAAGTCACGACAACGCTTTTGGGAGCTTGCAGGCTCTAAACTTGGTGATATCCTTGGTGTTGAAAAAACAGCCGAGCAGATCGATGCAGATACTGCAGCAGTTGGTGATGAAGGTGAGGTTGATTTTAAGGAAGATGCGAAGTTTGCACAACATATGAAGAAGGGGGAAGCAGTGAGTGAGTTTGCCAAGTCAAAAACCATAGCACAACAAAGACAGTATCTTCCTATATATTCCGTCAGAGATGAGCTGCTGCAGGTTATACGTGAAAATCAGGTGGTTGTGGTGGTTGGAGAAACTGGTTCAGGAAAGACCACACAACTGACTCAGTATCTATTTGAGGATGGTTATACTACAAATGGTATTGTTGGTTGCACCCAACCAAGACGTGTGGCAGCAATGAGTGTAGCAAAAAGAGTCAGTGAAGAGATGGAGTGCGAGTTGGGTGATAAAGTAGGTTATGCCATTCGATTTGAGGATGTAACTGGGCCAACAACTATTATTAAGTATATGACTGATGGGGTTCTTCTACGTGAAACTCTCAAAGATTCTGATCTTGAAAAATACCGTGTAATTGTAATGGATGAAGCTCACGAGAGGTCACTTAGCACTGATGTCCTTTTCGGGATCTTGAAAAAGGTGGTTGCTCAACGTCGTGATTTCAAGCTTATTGTGACATCTGCGACTCTTAATGCTCAAAAGTTTTCAAACTTTTTTGGAAGTGTCCCAATTTTTCACATCCCTGGGAGAACATTTCCTGTGAATACTTTGTATAGCAAAACTCCATGTGAAGATTACGTTGAAGCAGCCGTAAAGCAAGCTATGACCATCCATATCACAAGCCCTCCTGGTGACATTCTTATCTTCATGACTGGCCAAGACGAGATCGAAGCAGCCTGTTTTGCCCTTGCAGAGCGTATCGAACAACTCATTTCATCTACAAAGAAGGGGGTGCCCAAACTTTTGATACTACCTATCTATTCACAGTTGCCAGCTGATTTGCAAGCAAAGATATTCCAGAAAGCTGAAGATGGTGCCCGAAAATGCATTGTTGCGACCAATATTGCTGAGACTTCCTTAACGGTTGATGGAATATTTTATGTTATTGACACTGGTTATGGTAAAATGAAAGTGTATAACCCTAGAATGGGTATGGATGCACTACAAGTGTTTCCGGTAAGTCGTGCTGCCGCTGATCAACGTGCTGGACGTGCTGGTAGAACTGGACCTGGTACTTGCTATCGTTTGTACACAGAAAGTGCATATTTAAACGAAATGTTGCCAAGTCCTGTGCCAGAAATCCAAAGAACTAACCTGGGGAATGTTGTTTTGCTGCTTAAATCGCTTAAAGTTGAAAACTTATTGGATTTTGACTTTATGGACCCACCACCGCAGGATAACATTCTCAACTCCATGTACCAGTTGTGGGTATTAGGGGCTCTTAACAATGTAGGAGGTTTGACTGAACTTGGGTGGAAGATGGTTGAGTTTCCATTGGATCCCCCACTTGCCAAAATGCTTTTGATGGGCGAACAACTTGGGTGCCTTGATGAGGTACTAACGATCGTTTCGATGCTTTCAGTACCGTCAGTATTTTTTCGACCCAAAGATCGAGTCGAGGAGAGTGATGCTGCAAGGGAGAGGTTTTTCATACCGGAATCCGACCATTTAACGTTGTATAATGTTTATCAACAATGGAAACAACACCAGTACAGGGGAGATTGGTGCAATGATCATTTCTTGCATGTTAAAGGGCTACGAAAGGCTCGAGAGGTGCGGTCGCAGTTGTTAGACATTTTGAAGACTTTGAAAATACCTTTGACATCTTGTTGGCCAGATACAGATCTTGTGAGAAAGGCTATTTGCTCTGCTTATTTTCACAATGCAGCTAGATTGAAGGGTGTTGGAGAATATGTTAACTGCAGAAATGGGATGCCATGCCATCTTCATCCGAGCAGTGCTCTTTATGGCATGGGATGTACTCCTGATTACGTCGTGTATCACGAATTGATTTTGACGACGAAGGAGTATATGCAGTGTGCGACAGCGGTCGAGCCTCAATGGTTAGCTGAGCTCGGACCAATGTTTTTCTCAGTCAAGGAGTCAGATACATCACTCTTGGAGCATAAGAAAAGGCAAAAAGAAGAGAAAACAGCCATGGAAGAAGAGATGGAGTCATTAAGAAAGATTCAAGTCGAGTCAGAGAGAGAAAATAAAGAGCGGGAAAAGGAGAAAAGAAGAAGGCAGCAGCAACAAGTTTCTATGCCGGGTTTTCGTCAAGGTTCTGGAACTTATTTAAGACCAAAGAAGCTAGGTTTGGTTTCCCGCGAGAATATGGAAGCTGAAGGTCAAAAGACGGCCACAAATCCCTCCGCAATGCTTACTGGTCTTCTCACCAGGAGAGCGAAACTACAGGACGAGCTACGGAATATTGAGAAGCAGGTTTATGACATGGAGACTAATTACCTACAGGATCCAAGCCAATGTGGGAATGTATTGAAAGGTTTTGAAGGATTCCTGTCTGCATCTAAGAGTACTGCTCTTTTGAAGCGGTCTAGGAAGTTTCAGCTTGAAGATAGGCTCTTCTCATTGTCTTCAGTTACCTCCCCTGCTGCTGAAGAGCTTGCAGCTGGACGAGATGATGGGAGATCCGACTTAGGTCCTGGCAGATCTAAAGGTGGAGGCATATATTCCAATGGACAAGGGAAACCGAAAAAGGGAAGACCGGCCCCTAGGGATGCAAAGAGAATGCGACATTCAAGCGAGCAAGATTTCGACTACGATGATGATCCGGACTTGACATTGTGA | 5391 | 44.74 | MSIVNDLFGNYQEDFLWNNNQDESLISGEENYFNYLKEVLFDDIFEEAAGGTTSSDSSSSSSSSSCSSPVMQVKEEIEEGSFGDDNVVQEDESRKEDRVYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFDSAEAAALAYDQAAFCMRGGLATLNFPVEVVRESLREMKYRWEAGCSPVLALKRRHSIRRKKMAEVEKMEKKMKKKKKQTVVVFEDLGVEWDVVAELIRNTMKERGLRKAPGCSRVNINTKTHCFDVANKTHPSSSKLADDVGGRKLANGGGSPEVGRRQLLELATEVGRQWWRPVLTHGDHLSVIPTHDRRQPQPTVGRPPPSDRLPIVTPPRQPSTQGGDEVIDIDRKTLLLEPENNIEGGLSVPGKDRPVFRPPERKSHLGLDVLANAKRGGSNDNGFKVPQQSIASFVSSMEEEETIESSGVTDSGKEAVSRKHYVKNRNYREIASNDSNEGSTLAQGGIAGDSFKNRNSSETSDSSVITMSSKSTHVSRYRSPRQDYDNHDRERNFFDNDSRSNNRRARHGHSYDGDEPYHGRSRYQRDYGRETERKRSRYESSRRTPGRSDWDDGRWEWEETPRRDGRSNSSRHHQPSPSPMYVGASPDARLVSPWLGGNTPNSTGYSASPWDQISPSPVPVRASGSSVKSSSSSYHSKTHHLKFSSRSSPLSEDSQQDSLTDKSELNGTKYEISENMRLEMEYNSDRAWYDRDEGNTMFDADSSSFFFGDDAAFQKKEAELAKRLVRRDGTKMTLAQSKKLSQLTADNAQWEDRQLLRSGAVRGTEVQTDFDDEEERKVILLVHDTKPPFLDGRVVFTKQAEPIMPIKDPTSDMAIISRKGSTLVREIHEKQNMNKSRQRFWELAGSKLGDILGVEKTAEQIDADTAAVGDEGEVDFKEDAKFAQHMKKGEAVSEFAKSKTIAQQRQYLPIYSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLFEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMECELGDKVGYAIRFEDVTGPTTIIKYMTDGVLLRETLKDSDLEKYRVIVMDEAHERSLSTDVLFGILKKVVAQRRDFKLIVTSATLNAQKFSNFFGSVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALAERIEQLISSTKKGVPKLLILPIYSQLPADLQAKIFQKAEDGARKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPRMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKVENLLDFDFMDPPPQDNILNSMYQLWVLGALNNVGGLTELGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPKDRVEESDAARERFFIPESDHLTLYNVYQQWKQHQYRGDWCNDHFLHVKGLRKAREVRSQLLDILKTLKIPLTSCWPDTDLVRKAICSAYFHNAARLKGVGEYVNCRNGMPCHLHPSSALYGMGCTPDYVVYHELILTTKEYMQCATAVEPQWLAELGPMFFSVKESDTSLLEHKKRQKEEKTAMEEEMESLRKIQVESERENKEREKEKRRRQQQQVSMPGFRQGSGTYLRPKKLGLVSRENMEAEGQKTATNPSAMLTGLLTRRAKLQDELRNIEKQVYDMETNYLQDPSQCGNVLKGFEGFLSASKSTALLKRSRKFQLEDRLFSLSSVTSPAAEELAAGRDDGRSDLGPGRSKGGGIYSNGQGKPKKGRPAPRDAKRMRHSSEQDFDYDDDPDLTL | 1796 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 7074746 | 7105623 | + | ClCG09G007770.2 | Cla09g00720 | 280140 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla09g00720 | 1796 | MobiDBLite | consensus disorder prediction | 1568 | 1611 | - | - | |
Cla09g00720 | 1796 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 927 | 1466 | IPR027417 | - | |
Cla09g00720 | 1796 | Gene3D | - | 1112 | 1289 | IPR027417 | - | |
Cla09g00720 | 1796 | Gene3D | - | 887 | 1111 | IPR027417 | - | |
Cla09g00720 | 1796 | MobiDBLite | consensus disorder prediction | 314 | 353 | - | - | |
Cla09g00720 | 1796 | MobiDBLite | consensus disorder prediction | 1568 | 1626 | - | - | |
Cla09g00720 | 1796 | Pfam | DEAD/DEAH box helicase | 942 | 1095 | IPR011545 | GO:0003676|GO:0005524 | |
Cla09g00720 | 1796 | SMART | ultradead3 | 934 | 1118 | IPR014001 | - | |
Cla09g00720 | 1796 | Pfam | Helicase conserved C-terminal domain | 1141 | 1270 | IPR001650 | - | |
Cla09g00720 | 1796 | MobiDBLite | consensus disorder prediction | 631 | 698 | - | - | |
Cla09g00720 | 1796 | Coils | Coil | 1571 | 1613 | - | - | |
Cla09g00720 | 1796 | CDD | SF2_C_RHA | 1113 | 1278 | - | - | |
Cla09g00720 | 1796 | Pfam | Helicase associated domain (HA2) | 1334 | 1419 | IPR007502 | GO:0004386 | |
Cla09g00720 | 1796 | MobiDBLite | consensus disorder prediction | 262 | 285 | - | - | |
Cla09g00720 | 1796 | Gene3D | AP2/ERF domain | 99 | 160 | IPR036955 | GO:0003700|GO:0006355 | |
Cla09g00720 | 1796 | MobiDBLite | consensus disorder prediction | 461 | 613 | - | - | |
Cla09g00720 | 1796 | CDD | AP2 | 100 | 158 | IPR001471 | GO:0003700|GO:0006355 | |
Cla09g00720 | 1796 | PANTHER | ATP-DEPENDENT RNA HELICASE | 754 | 1560 | - | - | |
Cla09g00720 | 1796 | MobiDBLite | consensus disorder prediction | 1730 | 1796 | - | - | |
Cla09g00720 | 1796 | PRINTS | Ethylene responsive element binding protein signature | 100 | 111 | IPR001471 | GO:0003700|GO:0006355 | |
Cla09g00720 | 1796 | PRINTS | Ethylene responsive element binding protein signature | 123 | 139 | IPR001471 | GO:0003700|GO:0006355 | |
Cla09g00720 | 1796 | SMART | ha2_5 | 1331 | 1421 | IPR007502 | GO:0004386 | |
Cla09g00720 | 1796 | MobiDBLite | consensus disorder prediction | 326 | 340 | - | - | |
Cla09g00720 | 1796 | ProSiteProfiles | AP2/ERF domain profile. | 99 | 157 | IPR001471 | GO:0003700|GO:0006355 | |
Cla09g00720 | 1796 | Gene3D | - | 1316 | 1472 | - | - | |
Cla09g00720 | 1796 | SMART | rav1_2 | 99 | 163 | IPR001471 | GO:0003700|GO:0006355 | |
Cla09g00720 | 1796 | Pfam | AP2 domain | 99 | 149 | IPR001471 | GO:0003700|GO:0006355 | |
Cla09g00720 | 1796 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 946 | 1109 | IPR014001 | - | |
Cla09g00720 | 1796 | PANTHER | PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HELICASE PRP16 | 754 | 1560 | - | - | |
Cla09g00720 | 1796 | MobiDBLite | consensus disorder prediction | 504 | 598 | - | - | |
Cla09g00720 | 1796 | MobiDBLite | consensus disorder prediction | 477 | 503 | - | - | |
Cla09g00720 | 1796 | SUPERFAMILY | DNA-binding domain | 99 | 159 | IPR016177 | GO:0003677 | |
Cla09g00720 | 1796 | Coils | Coil | 1655 | 1682 | - | - | |
Cla09g00720 | 1796 | SMART | helicmild6 | 1166 | 1270 | IPR001650 | - | |
Cla09g00720 | 1796 | MobiDBLite | consensus disorder prediction | 51 | 70 | - | - | |
Cla09g00720 | 1796 | Pfam | Oligonucleotide/oligosaccharide-binding (OB)-fold | 1478 | 1555 | IPR011709 | - | |
Cla09g00720 | 1796 | Pfam | Histone acetyltransferase subunit NuA4 | 1655 | 1731 | IPR015418 | GO:0000123|GO:0016573 | |
Cla09g00720 | 1796 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1131 | 1311 | IPR001650 | - | |
Cla09g00720 | 1796 | Coils | Coil | 189 | 209 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cla07g00093 | Cla09g00720 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla02g01599 | Cla-Chr2:30698249 | Cla09g00720 | Cla-Chr9:7074746 | 0 | dispersed | |
Cla05g00451 | Cla-Chr5:4029809 | Cla09g00720 | Cla-Chr9:7074746 | 1.38E-40 | dispersed | |
Cla06g00659 | Cla-Chr6:8186126 | Cla09g00720 | Cla-Chr9:7074746 | 6.50E-35 | dispersed | |
Cla07g00093 | Cla-Chr7:1058226 | Cla09g00720 | Cla-Chr9:7074746 | 1.92E-47 | dispersed | |
Cla08g01690 | Cla-Chr8:29498893 | Cla09g00720 | Cla-Chr9:7074746 | 3.56E-168 | dispersed | |
Cla09g00456 | Cla-Chr9:4352804 | Cla09g00720 | Cla-Chr9:7074746 | 0 | dispersed | |
Cla09g00509 | Cla-Chr9:4801825 | Cla09g00720 | Cla-Chr9:7074746 | 4.01E-53 | dispersed | |
Cla09g00720 | Cla-Chr9:7074746 | Cla10g00507 | Cla-Chr10:6715856 | 1.77E-177 | dispersed | |
Cla09g00720 | Cla-Chr9:7074746 | Cla06g01442 | Cla-Chr6:27992241 | 1.03E-85 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61702 | PF00270 | DEAD | 5.40E-08 | CL0023 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla09g00720 | K12815 | - | csv:101204563 | 2373.97 |