Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00720 ATGTCAATTGTTAATGATTTGTTTGGTAATTACCAAGAAGATTTCTTGTGGAACAATAATCAGGATGAAAGTTTAATTTCCGGGGAAGAGAATTATTTCAATTACTTGAAAGAGGTGTTGTTTGATGATATTTTTGAGGAGGCGGCCGGAGGAACGACGTCGTCAGATTCGAGTTCGAGTTCGAGTTCGAGTTCTTGTTCGTCTCCAGTGATGCAAGTTAAGGAGGAGATTGAGGAAGGGAGTTTTGGTGACGACAACGTTGTGCAGGAAGATGAATCACGTAAGGAGGATAGGGTTTATCGAGGGGTGCGAAGGAGGCCGTGGGGGAAGTACGCAGCCGAGATTAGGGATTCGACCCGACAAGGGGTGAGGGTGTGGTTGGGGACGTTTGATAGCGCCGAAGCGGCTGCGTTGGCGTATGACCAAGCCGCATTTTGCATGAGAGGAGGGTTAGCCACGCTTAACTTTCCGGTCGAGGTTGTACGAGAGTCACTCCGAGAGATGAAGTACCGGTGGGAGGCTGGGTGCTCGCCGGTCTTGGCGCTTAAGCGGCGCCACTCGATACGGAGGAAGAAGATGGCTGAGGTGGAGAAGATGGAGAAGAAGATGAAGAAGAAGAAGAAGCAAACTGTAGTTGTTTTTGAGGATTTGGGTGTAGAATGGGATGTGGTAGCTGAGCTTATTAGAAACACCATGAAGGAAAGAGGTCTAAGGAAGGCTCCTGGCTGTAGTCGGGTTAACATTAATACAAAGACCCATTGTTTTGATGTTGCTAATAAAACACATCCAAGTTCTTCCAAGTTAGCCGACGACGTTGGTGGTCGAAAGTTGGCCAATGGGGGAGGATCACCGGAGGTTGGCCGACGACAATTATTGGAGTTGGCCACCGAAGTTGGTCGACAGTGGTGGCGACCAGTGTTGACCCACGGCGATCACCTGAGCGTCATACCCACGCACGACCGCCGCCAACCACAGCCAACCGTCGGCCGTCCGCCTCCCTCCGACCGGCTGCCGATCGTCACTCCACCGCGTCAGCCGTCGACGCAAGGAGGAGATGAAGTTATTGACATAGACAGGAAAACACTATTGTTAGAACCAGAGAATAATATTGAAGGGGGATTGTCAGTTCCGGGAAAGGATAGACCGGTGTTTAGACCTCCAGAGAGAAAATCTCATCTAGGCCTTGATGTCCTTGCAAATGCAAAACGGGGAGGATCTAATGACAATGGATTCAAAGTCCCACAACAAAGTATTGCTTCTTTTGTTTCATCAATGGAGGAAGAGGAGACAATTGAATCATCTGGAGTAACTGATTCAGGAAAAGAAGCTGTTTCACGAAAGCATTATGTTAAAAATAGAAATTATCGGGAAATAGCTTCCAATGATTCAAATGAAGGGAGTACTTTAGCTCAAGGTGGAATAGCTGGAGATTCATTTAAGAATCGTAATTCTAGTGAAACTTCGGATTCTAGTGTTATAACTATGTCATCCAAAAGCACACATGTGAGCAGGTATAGGAGCCCTAGACAAGACTACGATAATCATGATAGAGAGAGAAATTTTTTTGACAATGATAGTAGAAGCAATAACAGGCGGGCGAGACATGGGCACAGTTATGATGGTGATGAGCCTTATCATGGGAGATCCCGGTACCAAAGGGACTATGGCAGGGAAACTGAAAGAAAGAGAAGTAGATATGAAAGTTCGAGAAGAACTCCTGGTAGATCTGATTGGGATGATGGTAGATGGGAATGGGAAGAAACACCACGTAGAGATGGCCGCTCTAACTCTAGTAGGCACCATCAACCTTCACCATCCCCAATGTATGTCGGTGCCTCACCAGATGCTCGGTTAGTTTCTCCATGGTTAGGTGGGAACACTCCTAATTCTACTGGTTATTCTGCTTCCCCTTGGGATCAGATCTCTCCTTCTCCAGTTCCAGTGCGTGCCTCTGGATCTTCAGTAAAGTCATCAAGCTCAAGTTATCATTCTAAAACTCACCATCTTAAATTTTCTTCACGAAGTTCACCTTTGTCTGAGGATTCTCAACAAGATTCTCTGACAGACAAGTCTGAGTTAAATGGAACCAAGTATGAGATCAGTGAGAACATGCGTCTGGAGATGGAATACAACTCTGACCGGGCTTGGTATGATAGAGATGAAGGTAATACAATGTTTGATGCTGATAGCTCATCATTTTTCTTTGGAGATGATGCTGCCTTCCAGAAGAAAGAAGCTGAGCTGGCCAAAAGATTGGTCCGTCGAGATGGAACTAAGATGACTCTTGCTCAAAGCAAAAAGCTGTCTCAGCTCACTGCAGATAATGCACAGTGGGAAGACCGACAACTTTTGAGGTCAGGAGCTGTTAGGGGTACTGAGGTGCAAACTGACTTTGACGACGAGGAAGAGCGGAAAGTCATTCTTCTTGTCCATGATACAAAGCCTCCTTTCCTTGATGGAAGAGTTGTTTTCACTAAACAAGCAGAACCAATAATGCCAATAAAAGACCCTACATCAGATATGGCTATTATATCACGCAAAGGATCTACATTGGTGAGGGAAATTCATGAGAAGCAAAATATGAACAAGTCACGACAACGCTTTTGGGAGCTTGCAGGCTCTAAACTTGGTGATATCCTTGGTGTTGAAAAAACAGCCGAGCAGATCGATGCAGATACTGCAGCAGTTGGTGATGAAGGTGAGGTTGATTTTAAGGAAGATGCGAAGTTTGCACAACATATGAAGAAGGGGGAAGCAGTGAGTGAGTTTGCCAAGTCAAAAACCATAGCACAACAAAGACAGTATCTTCCTATATATTCCGTCAGAGATGAGCTGCTGCAGGTTATACGTGAAAATCAGGTGGTTGTGGTGGTTGGAGAAACTGGTTCAGGAAAGACCACACAACTGACTCAGTATCTATTTGAGGATGGTTATACTACAAATGGTATTGTTGGTTGCACCCAACCAAGACGTGTGGCAGCAATGAGTGTAGCAAAAAGAGTCAGTGAAGAGATGGAGTGCGAGTTGGGTGATAAAGTAGGTTATGCCATTCGATTTGAGGATGTAACTGGGCCAACAACTATTATTAAGTATATGACTGATGGGGTTCTTCTACGTGAAACTCTCAAAGATTCTGATCTTGAAAAATACCGTGTAATTGTAATGGATGAAGCTCACGAGAGGTCACTTAGCACTGATGTCCTTTTCGGGATCTTGAAAAAGGTGGTTGCTCAACGTCGTGATTTCAAGCTTATTGTGACATCTGCGACTCTTAATGCTCAAAAGTTTTCAAACTTTTTTGGAAGTGTCCCAATTTTTCACATCCCTGGGAGAACATTTCCTGTGAATACTTTGTATAGCAAAACTCCATGTGAAGATTACGTTGAAGCAGCCGTAAAGCAAGCTATGACCATCCATATCACAAGCCCTCCTGGTGACATTCTTATCTTCATGACTGGCCAAGACGAGATCGAAGCAGCCTGTTTTGCCCTTGCAGAGCGTATCGAACAACTCATTTCATCTACAAAGAAGGGGGTGCCCAAACTTTTGATACTACCTATCTATTCACAGTTGCCAGCTGATTTGCAAGCAAAGATATTCCAGAAAGCTGAAGATGGTGCCCGAAAATGCATTGTTGCGACCAATATTGCTGAGACTTCCTTAACGGTTGATGGAATATTTTATGTTATTGACACTGGTTATGGTAAAATGAAAGTGTATAACCCTAGAATGGGTATGGATGCACTACAAGTGTTTCCGGTAAGTCGTGCTGCCGCTGATCAACGTGCTGGACGTGCTGGTAGAACTGGACCTGGTACTTGCTATCGTTTGTACACAGAAAGTGCATATTTAAACGAAATGTTGCCAAGTCCTGTGCCAGAAATCCAAAGAACTAACCTGGGGAATGTTGTTTTGCTGCTTAAATCGCTTAAAGTTGAAAACTTATTGGATTTTGACTTTATGGACCCACCACCGCAGGATAACATTCTCAACTCCATGTACCAGTTGTGGGTATTAGGGGCTCTTAACAATGTAGGAGGTTTGACTGAACTTGGGTGGAAGATGGTTGAGTTTCCATTGGATCCCCCACTTGCCAAAATGCTTTTGATGGGCGAACAACTTGGGTGCCTTGATGAGGTACTAACGATCGTTTCGATGCTTTCAGTACCGTCAGTATTTTTTCGACCCAAAGATCGAGTCGAGGAGAGTGATGCTGCAAGGGAGAGGTTTTTCATACCGGAATCCGACCATTTAACGTTGTATAATGTTTATCAACAATGGAAACAACACCAGTACAGGGGAGATTGGTGCAATGATCATTTCTTGCATGTTAAAGGGCTACGAAAGGCTCGAGAGGTGCGGTCGCAGTTGTTAGACATTTTGAAGACTTTGAAAATACCTTTGACATCTTGTTGGCCAGATACAGATCTTGTGAGAAAGGCTATTTGCTCTGCTTATTTTCACAATGCAGCTAGATTGAAGGGTGTTGGAGAATATGTTAACTGCAGAAATGGGATGCCATGCCATCTTCATCCGAGCAGTGCTCTTTATGGCATGGGATGTACTCCTGATTACGTCGTGTATCACGAATTGATTTTGACGACGAAGGAGTATATGCAGTGTGCGACAGCGGTCGAGCCTCAATGGTTAGCTGAGCTCGGACCAATGTTTTTCTCAGTCAAGGAGTCAGATACATCACTCTTGGAGCATAAGAAAAGGCAAAAAGAAGAGAAAACAGCCATGGAAGAAGAGATGGAGTCATTAAGAAAGATTCAAGTCGAGTCAGAGAGAGAAAATAAAGAGCGGGAAAAGGAGAAAAGAAGAAGGCAGCAGCAACAAGTTTCTATGCCGGGTTTTCGTCAAGGTTCTGGAACTTATTTAAGACCAAAGAAGCTAGGTTTGGTTTCCCGCGAGAATATGGAAGCTGAAGGTCAAAAGACGGCCACAAATCCCTCCGCAATGCTTACTGGTCTTCTCACCAGGAGAGCGAAACTACAGGACGAGCTACGGAATATTGAGAAGCAGGTTTATGACATGGAGACTAATTACCTACAGGATCCAAGCCAATGTGGGAATGTATTGAAAGGTTTTGAAGGATTCCTGTCTGCATCTAAGAGTACTGCTCTTTTGAAGCGGTCTAGGAAGTTTCAGCTTGAAGATAGGCTCTTCTCATTGTCTTCAGTTACCTCCCCTGCTGCTGAAGAGCTTGCAGCTGGACGAGATGATGGGAGATCCGACTTAGGTCCTGGCAGATCTAAAGGTGGAGGCATATATTCCAATGGACAAGGGAAACCGAAAAAGGGAAGACCGGCCCCTAGGGATGCAAAGAGAATGCGACATTCAAGCGAGCAAGATTTCGACTACGATGATGATCCGGACTTGACATTGTGA 5391 44.74 MSIVNDLFGNYQEDFLWNNNQDESLISGEENYFNYLKEVLFDDIFEEAAGGTTSSDSSSSSSSSSCSSPVMQVKEEIEEGSFGDDNVVQEDESRKEDRVYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFDSAEAAALAYDQAAFCMRGGLATLNFPVEVVRESLREMKYRWEAGCSPVLALKRRHSIRRKKMAEVEKMEKKMKKKKKQTVVVFEDLGVEWDVVAELIRNTMKERGLRKAPGCSRVNINTKTHCFDVANKTHPSSSKLADDVGGRKLANGGGSPEVGRRQLLELATEVGRQWWRPVLTHGDHLSVIPTHDRRQPQPTVGRPPPSDRLPIVTPPRQPSTQGGDEVIDIDRKTLLLEPENNIEGGLSVPGKDRPVFRPPERKSHLGLDVLANAKRGGSNDNGFKVPQQSIASFVSSMEEEETIESSGVTDSGKEAVSRKHYVKNRNYREIASNDSNEGSTLAQGGIAGDSFKNRNSSETSDSSVITMSSKSTHVSRYRSPRQDYDNHDRERNFFDNDSRSNNRRARHGHSYDGDEPYHGRSRYQRDYGRETERKRSRYESSRRTPGRSDWDDGRWEWEETPRRDGRSNSSRHHQPSPSPMYVGASPDARLVSPWLGGNTPNSTGYSASPWDQISPSPVPVRASGSSVKSSSSSYHSKTHHLKFSSRSSPLSEDSQQDSLTDKSELNGTKYEISENMRLEMEYNSDRAWYDRDEGNTMFDADSSSFFFGDDAAFQKKEAELAKRLVRRDGTKMTLAQSKKLSQLTADNAQWEDRQLLRSGAVRGTEVQTDFDDEEERKVILLVHDTKPPFLDGRVVFTKQAEPIMPIKDPTSDMAIISRKGSTLVREIHEKQNMNKSRQRFWELAGSKLGDILGVEKTAEQIDADTAAVGDEGEVDFKEDAKFAQHMKKGEAVSEFAKSKTIAQQRQYLPIYSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLFEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMECELGDKVGYAIRFEDVTGPTTIIKYMTDGVLLRETLKDSDLEKYRVIVMDEAHERSLSTDVLFGILKKVVAQRRDFKLIVTSATLNAQKFSNFFGSVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALAERIEQLISSTKKGVPKLLILPIYSQLPADLQAKIFQKAEDGARKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPRMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKVENLLDFDFMDPPPQDNILNSMYQLWVLGALNNVGGLTELGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPKDRVEESDAARERFFIPESDHLTLYNVYQQWKQHQYRGDWCNDHFLHVKGLRKAREVRSQLLDILKTLKIPLTSCWPDTDLVRKAICSAYFHNAARLKGVGEYVNCRNGMPCHLHPSSALYGMGCTPDYVVYHELILTTKEYMQCATAVEPQWLAELGPMFFSVKESDTSLLEHKKRQKEEKTAMEEEMESLRKIQVESERENKEREKEKRRRQQQQVSMPGFRQGSGTYLRPKKLGLVSRENMEAEGQKTATNPSAMLTGLLTRRAKLQDELRNIEKQVYDMETNYLQDPSQCGNVLKGFEGFLSASKSTALLKRSRKFQLEDRLFSLSSVTSPAAEELAAGRDDGRSDLGPGRSKGGGIYSNGQGKPKKGRPAPRDAKRMRHSSEQDFDYDDDPDLTL 1796
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7074746 7105623 + ClCG09G007770.2 Cla09g00720 280140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00720 1796 MobiDBLite consensus disorder prediction 1568 1611 - -
Cla09g00720 1796 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 927 1466 IPR027417 -
Cla09g00720 1796 Gene3D - 1112 1289 IPR027417 -
Cla09g00720 1796 Gene3D - 887 1111 IPR027417 -
Cla09g00720 1796 MobiDBLite consensus disorder prediction 314 353 - -
Cla09g00720 1796 MobiDBLite consensus disorder prediction 1568 1626 - -
Cla09g00720 1796 Pfam DEAD/DEAH box helicase 942 1095 IPR011545 GO:0003676|GO:0005524
Cla09g00720 1796 SMART ultradead3 934 1118 IPR014001 -
Cla09g00720 1796 Pfam Helicase conserved C-terminal domain 1141 1270 IPR001650 -
Cla09g00720 1796 MobiDBLite consensus disorder prediction 631 698 - -
Cla09g00720 1796 Coils Coil 1571 1613 - -
Cla09g00720 1796 CDD SF2_C_RHA 1113 1278 - -
Cla09g00720 1796 Pfam Helicase associated domain (HA2) 1334 1419 IPR007502 GO:0004386
Cla09g00720 1796 MobiDBLite consensus disorder prediction 262 285 - -
Cla09g00720 1796 Gene3D AP2/ERF domain 99 160 IPR036955 GO:0003700|GO:0006355
Cla09g00720 1796 MobiDBLite consensus disorder prediction 461 613 - -
Cla09g00720 1796 CDD AP2 100 158 IPR001471 GO:0003700|GO:0006355
Cla09g00720 1796 PANTHER ATP-DEPENDENT RNA HELICASE 754 1560 - -
Cla09g00720 1796 MobiDBLite consensus disorder prediction 1730 1796 - -
Cla09g00720 1796 PRINTS Ethylene responsive element binding protein signature 100 111 IPR001471 GO:0003700|GO:0006355
Cla09g00720 1796 PRINTS Ethylene responsive element binding protein signature 123 139 IPR001471 GO:0003700|GO:0006355
Cla09g00720 1796 SMART ha2_5 1331 1421 IPR007502 GO:0004386
Cla09g00720 1796 MobiDBLite consensus disorder prediction 326 340 - -
Cla09g00720 1796 ProSiteProfiles AP2/ERF domain profile. 99 157 IPR001471 GO:0003700|GO:0006355
Cla09g00720 1796 Gene3D - 1316 1472 - -
Cla09g00720 1796 SMART rav1_2 99 163 IPR001471 GO:0003700|GO:0006355
Cla09g00720 1796 Pfam AP2 domain 99 149 IPR001471 GO:0003700|GO:0006355
Cla09g00720 1796 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 946 1109 IPR014001 -
Cla09g00720 1796 PANTHER PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HELICASE PRP16 754 1560 - -
Cla09g00720 1796 MobiDBLite consensus disorder prediction 504 598 - -
Cla09g00720 1796 MobiDBLite consensus disorder prediction 477 503 - -
Cla09g00720 1796 SUPERFAMILY DNA-binding domain 99 159 IPR016177 GO:0003677
Cla09g00720 1796 Coils Coil 1655 1682 - -
Cla09g00720 1796 SMART helicmild6 1166 1270 IPR001650 -
Cla09g00720 1796 MobiDBLite consensus disorder prediction 51 70 - -
Cla09g00720 1796 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 1478 1555 IPR011709 -
Cla09g00720 1796 Pfam Histone acetyltransferase subunit NuA4 1655 1731 IPR015418 GO:0000123|GO:0016573
Cla09g00720 1796 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1131 1311 IPR001650 -
Cla09g00720 1796 Coils Coil 189 209 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla07g00093 Cla09g00720 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01599 Cla-Chr2:30698249 Cla09g00720 Cla-Chr9:7074746 0 dispersed
Cla05g00451 Cla-Chr5:4029809 Cla09g00720 Cla-Chr9:7074746 1.38E-40 dispersed
Cla06g00659 Cla-Chr6:8186126 Cla09g00720 Cla-Chr9:7074746 6.50E-35 dispersed
Cla07g00093 Cla-Chr7:1058226 Cla09g00720 Cla-Chr9:7074746 1.92E-47 dispersed
Cla08g01690 Cla-Chr8:29498893 Cla09g00720 Cla-Chr9:7074746 3.56E-168 dispersed
Cla09g00456 Cla-Chr9:4352804 Cla09g00720 Cla-Chr9:7074746 0 dispersed
Cla09g00509 Cla-Chr9:4801825 Cla09g00720 Cla-Chr9:7074746 4.01E-53 dispersed
Cla09g00720 Cla-Chr9:7074746 Cla10g00507 Cla-Chr10:6715856 1.77E-177 dispersed
Cla09g00720 Cla-Chr9:7074746 Cla06g01442 Cla-Chr6:27992241 1.03E-85 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61702 PF00270 DEAD 5.40E-08 CL0023 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00720 K12815 - csv:101204563 2373.97