Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00749 ATGGCAGCCTCTTCTTCTTCTCCTTCTTCTCCTCCATGTGGAGCTTGCAAGTTTCTTAGAAGAAAGTGTGTCAATGGCTGCATCTTTGCTCCTTATTTCCGCCACGAGCTCGGTGCCTCCCAATTCTCTGCCATCCACAAAGTTTTCGGTGCAAGCAATGCTTCCAAGCTTCTCGCTCACCTCCCAGTCTCCCACCGTTGCGAAGCGGCGGTGACGATCTCATACGAAGCTCAAGCGAGACTTCAAGATCCGATCTACGGTTGTGTATCTCATATTTTCGCTCTCCAGCAACAGGTTATGAATCTAAGGGCTCAAGTGGCTTATTTAAGAGAACAAGCAGCTCAAATCCTTCTCAACAACTACACTACAAGAAACCCTATTGAATTACCTTACGAAAAATCTTCATTTTATTCCGACGACCCATTACTAGATCTTCAAAGTTGGCTTCTGGCGGAGAGCTGCAGCGCCGCCGCGCCGGAGTTTGAATCTGCAGCGGTGCCGTACTTTGAGATGAGCGTCGTCGATTCAAATCTCGCCGGAGATTTCTGTTGCTAA 555 48.29 MAASSSSPSSPPCGACKFLRRKCVNGCIFAPYFRHELGASQFSAIHKVFGASNASKLLAHLPVSHRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNNYTTRNPIELPYEKSSFYSDDPLLDLQSWLLAESCSAAAPEFESAAVPYFEMSVVDSNLAGDFCC 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7412634 7413398 - ClCG09G008070.1 Cla09g00749 280169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00749 184 Coils Coil 92 112 - -
Cla09g00749 184 ProSiteProfiles LOB domain profile. 11 113 IPR004883 -
Cla09g00749 184 Pfam Lateral organ boundaries (LOB) domain 12 109 IPR004883 -
Cla09g00749 184 PANTHER LOB DOMAIN CONTAINING PROTEIN 10 132 - -
Cla09g00749 184 PANTHER LOB DOMAIN-CONTAINING PROTEIN 17-RELATED 10 132 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00087 Cla-Chr7:988887 Cla09g00749 Cla-Chr9:7412634 2.64E-61 dispersed
Cla09g00749 Cla-Chr9:7412634 Cla10g01510 Cla-Chr10:30343813 6.79E-48 dispersed
Cla09g00749 Cla-Chr9:7412634 Cla06g00031 Cla-Chr6:357930 3.33E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61706 PF03195 LOB 1.20E-34 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00749 K13945 - csv:101220863 335.109