Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00749 ATGGCAGCCTCTTCTTCTTCTCCTTCTTCTCCTCCATGTGGAGCTTGCAAGTTTCTTAGAAGAAAGTGTGTCAATGGCTGCATCTTTGCTCCTTATTTCCGCCACGAGCTCGGTGCCTCCCAATTCTCTGCCATCCACAAAGTTTTCGGTGCAAGCAATGCTTCCAAGCTTCTCGCTCACCTCCCAGTCTCCCACCGTTGCGAAGCGGCGGTGACGATCTCATACGAAGCTCAAGCGAGACTTCAAGATCCGATCTACGGTTGTGTATCTCATATTTTCGCTCTCCAGCAACAGGTTATGAATCTAAGGGCTCAAGTGGCTTATTTAAGAGAACAAGCAGCTCAAATCCTTCTCAACAACTACACTACAAGAAACCCTATTGAATTACCTTACGAAAAATCTTCATTTTATTCCGACGACCCATTACTAGATCTTCAAAGTTGGCTTCTGGCGGAGAGCTGCAGCGCCGCCGCGCCGGAGTTTGAATCTGCAGCGGTGCCGTACTTTGAGATGAGCGTCGTCGATTCAAATCTCGCCGGAGATTTCTGTTGCTAA 555 48.29 MAASSSSPSSPPCGACKFLRRKCVNGCIFAPYFRHELGASQFSAIHKVFGASNASKLLAHLPVSHRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNNYTTRNPIELPYEKSSFYSDDPLLDLQSWLLAESCSAAAPEFESAAVPYFEMSVVDSNLAGDFCC 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7412634 7413398 - ClCG09G008070.1 Cla09g00749 280169

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00749 184 Coils Coil 92 112 - -
Cla09g00749 184 ProSiteProfiles LOB domain profile. 11 113 IPR004883 -
Cla09g00749 184 Pfam Lateral organ boundaries (LOB) domain 12 109 IPR004883 -
Cla09g00749 184 PANTHER LOB DOMAIN CONTAINING PROTEIN 10 132 - -
Cla09g00749 184 PANTHER LOB DOMAIN-CONTAINING PROTEIN 17-RELATED 10 132 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00749 K13945 LBD29; LOB domain-containing protein 29 - csv:101220863 335.109
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00087 Cla-Chr7:988887 Cla09g00749 Cla-Chr9:7412634 2.64E-61 dispersed
Cla09g00749 Cla-Chr9:7412634 Cla10g01510 Cla-Chr10:30343813 6.79E-48 dispersed
Cla09g00749 Cla-Chr9:7412634 Cla06g00031 Cla-Chr6:357930 3.33E-46 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla11g01084 . 18 235 AS2 family AT1G65620 66.4 1.8e-69 259.2
Cla02g01308 . 21 129 AS2 family AT1G65620 79.8 2.2e-46 182.6
Cla06g01688 CCT,ECH 59 234 AS2 family AT1G65620 54.0 2.2e-46 182.6
Cla10g01326 CCT,ECH 18 128 AS2 family AT1G65620 70.3 2.3e-43 172.6
Cla01g01323 CCT,ECH 4 119 AS2 family AT1G65620 69.0 8.9e-40 160.6
Cla09g01879 CCT,ECH 30 134 AS2 family AT1G65620 67.6 4.9e-38 154.8
Cla11g00579 . 31 157 AS2 family AT1G65620 55.1 1.2e-36 150.2
Cla02g01308 . 20 141 AS2 family AT5G66870 85.2 3.7e-56 215.7
Cla11g01084 . 22 129 AS2 family AT5G66870 77.8 1.2e-43 174.1
Cla01g01323 CCT,ECH 15 132 AS2 family AT5G66870 65.3 1.8e-39 160.2
Cla06g01688 CCT,ECH 57 169 AS2 family AT5G66870 68.1 2.4e-39 159.8
Cla10g01326 CCT,ECH 22 128 AS2 family AT5G66870 68.2 3.1e-39 159.5
Cla02g01308 . 23 137 AS2 family AT2G23660 68.7 9.3e-44 174.5
Cla11g01084 . 23 129 AS2 family AT2G23660 69.2 8.2e-40 161.4
Cla06g01688 CCT,ECH 64 169 AS2 family AT2G23660 64.2 2.0e-38 156.8
Cla10g01326 CCT,ECH 22 138 AS2 family AT2G23660 58.1 2.2e-37 153.3
Cla01g01323 CCT,ECH 15 131 AS2 family AT2G23660 63.9 2.9e-37 152.9
Cla10g01326 CCT,ECH 19 129 AS2 family AT3G27650 84.7 2.1e-52 202.2
Cla09g01879 CCT,ECH 30 144 AS2 family AT3G27650 79.5 4.9e-49 191.0
Cla06g01688 CCT,ECH 60 170 AS2 family AT3G27650 78.4 2.1e-47 185.7
Cla01g01323 CCT,ECH 15 120 AS2 family AT3G27650 73.6 3.4e-42 168.3
Cla11g01084 . 20 129 AS2 family AT3G27650 68.2 1.0e-41 166.8
Cla02g01308 . 3 131 AS2 family AT3G27650 59.7 1.6e-39 159.5
Cla06g01688 CCT,ECH 59 169 AS2 family AT5G63090 93.7 4.4e-57 218.0
Cla10g01326 CCT,ECH 17 140 AS2 family AT5G63090 77.4 1.6e-51 199.5
Cla01g01323 CCT,ECH 13 119 AS2 family AT5G63090 81.3 3.7e-48 188.3
Cla09g01879 CCT,ECH 30 130 AS2 family AT5G63090 86.1 2.7e-46 182.2
Cla11g01084 . 20 139 AS2 family AT5G63090 70.8 2.3e-45 179.1
Cla02g01308 . 21 129 AS2 family AT5G63090 68.8 3.2e-39 158.7
Cla01g00888 . 54 181 AS2 family AT5G63090 59.4 3.5e-38 155.2
Cla02g01814 . 14 117 AS2 family AT5G63090 67.3 1.3e-37 153.3
Cla07g00427 . 4 106 AS2 family AT5G63090 69.9 1.3e-37 153.3
Cla11g00579 . 32 151 AS2 family AT5G63090 60.0 8.6e-37 150.6
Cla07g00427 . 3 114 AS2 family AT2G30130 92.0 2.8e-54 208.8
Cla02g01885 . 2 137 AS2 family AT2G30130 68.8 1.6e-49 193.0
Cla01g00888 . 49 155 AS2 family AT2G30130 77.6 1.8e-45 179.5
Cla02g01814 . 10 125 AS2 family AT2G30130 72.4 8.9e-45 177.2
Cla09g02200 . 21 122 AS2 family AT2G30130 72.5 1.5e-39 159.8
Cla06g01688 CCT,ECH 64 167 AS2 family AT2G30130 68.3 1.4e-37 153.3
Cla11g01084 . 24 126 AS2 family AT2G30130 67.0 9.0e-37 150.6
Cla10g01326 CCT,ECH 23 135 AS2 family AT2G30130 61.9 9.0e-37 150.6
Cla01g00888 . 42 209 AS2 family AT1G31320 74.1 5.3e-65 244.2
Cla02g01814 . 1 171 AS2 family AT1G31320 71.7 2.3e-60 228.8
Cla07g00427 . 2 132 AS2 family AT1G31320 66.2 3.0e-44 175.3
Cla02g01885 . 6 122 AS2 family AT1G31320 67.5 1.1e-41 166.8
Cla09g02200 . 21 124 AS2 family AT1G31320 73.1 1.4e-41 166.4
Cla06g01688 CCT,ECH 65 176 AS2 family AT1G31320 62.5 8.0e-37 150.6
Cla03g00230 . 34 202 AS2 family AT2G28500 55.2 5.7e-46 181.4
Cla03g00228 CCT,ECH 45 160 AS2 family AT2G28500 70.7 1.1e-44 177.2
Cla02g02039 . 31 196 AS2 family AT2G28500 53.3 1.7e-42 169.9
Cla02g01367 CCT,ECH 52 143 AS2 family AT2G28500 88.0 3.8e-42 168.7
Cla02g01814 . 13 122 AS2 family AT2G28500 66.4 6.3e-37 151.4
Cla07g00427 . 5 115 AS2 family AT2G28500 64.9 6.3e-37 151.4
Cla02g02039 . 4 196 AS2 family AT1G07900 60.9 5.2e-45 177.9
Cla03g00230 . 28 202 AS2 family AT1G07900 56.8 4.4e-44 174.9
Cla02g01367 CCT,ECH 52 206 AS2 family AT1G07900 68.8 7.4e-44 174.1
Cla03g00228 CCT,ECH 17 160 AS2 family AT1G07900 59.0 2.6e-41 165.6
Cla02g01814 . 6 171 AS2 family AT1G16530 57.6 8.2e-47 183.7
Cla01g00888 . 50 178 AS2 family AT1G16530 62.4 3.9e-41 164.9
Cla02g01885 . 2 161 AS2 family AT1G16530 51.8 1.4e-38 156.4
Cla07g00427 . 5 110 AS2 family AT1G16530 68.2 2.6e-37 152.1
Cla07g00463 . 1 157 AS2 family AT2G30340 66.5 1.0e-54 210.7
Cla11g00556 . 71 215 AS2 family AT2G30340 69.6 1.5e-53 206.8
Cla07g00463 . 32 157 AS2 family AT2G40470 82.5 5.8e-55 211.1
Cla11g00556 . 88 212 AS2 family AT2G40470 77.6 6.6e-51 197.6
Cla02g01814 . 11 131 AS2 family AT2G40470 62.0 8.1e-41 164.1
Cla01g00888 . 55 162 AS2 family AT2G40470 65.7 4.9e-38 154.8
Cla11g00579 . 23 184 AS2 family AT3G11090 60.4 3.3e-48 188.3
Cla07g00087 . 1 113 AS2 family AT2G42440 74.3 4.3e-44 175.3
Cla09g00749 . 9 118 AS2 family AT2G42440 71.8 3.4e-41 165.6
Cla07g00086 . 25 132 AS2 family AT2G42440 70.4 4.2e-39 158.7
Cla06g00031 . 29 138 AS2 family AT2G42440 65.2 3.0e-37 152.5
Cla09g00749 . 4 126 AS2 family AT3G58190 75.2 5.7e-48 188.0
Cla07g00087 . 4 115 AS2 family AT3G58190 79.5 8.2e-47 184.1
Cla07g00086 . 25 132 AS2 family AT3G58190 71.3 1.4e-41 166.8
Cla06g00031 . 29 127 AS2 family AT3G58190 74.7 5.7e-40 161.4
Cla07g00087 . 1 171 AS2 family AT2G31310 51.6 6.5e-40 161.0
Cla07g00086 . 25 235 AS2 family AT2G42430 55.2 1.1e-55 213.8
Cla06g00031 . 29 131 AS2 family AT2G42430 74.8 9.9e-41 164.1
Cla07g00087 . 3 94 AS2 family AT2G42430 80.4 7.1e-39 157.9
Cla09g00749 . 12 114 AS2 family AT2G42430 70.9 7.9e-38 154.5
Cla05g00235 . 741 845 AS2 family AT2G42430 66.7 1.3e-37 153.7
Cla06g00031 . 29 222 AS2 family AT4G00220 63.6 3.1e-60 228.8
Cla05g00235 . 743 906 AS2 family AT4G00220 54.8 6.8e-44 174.5
Cla06g00032 . 28 211 AS2 family AT4G00220 51.0 4.7e-37 151.8
Cla06g00031 . 29 240 AS2 family AT2G45420 69.0 3.1e-72 268.9
Cla05g00235 . 743 899 AS2 family AT2G45420 60.0 1.1e-50 197.2
Cla07g00086 . 26 128 AS2 family AT2G45420 77.7 4.3e-42 168.7
Cla09g00749 . 12 118 AS2 family AT2G45420 70.1 2.4e-40 162.9
Cla10g01510 . 37 126 AS2 family AT2G45420 80.0 8.4e-38 154.5
Cla06g00032 . 28 114 AS2 family AT2G45420 80.5 5.4e-37 151.8
Cla07g00087 . 7 95 AS2 family AT2G45420 76.4 1.2e-36 150.6
Cla10g01510 . 37 150 AS2 family AT3G03760 80.7 3.3e-45 179.1
Cla06g00031 . 29 130 AS2 family AT3G03760 80.4 2.5e-40 162.9
Cla07g00086 . 25 127 AS2 family AT3G03760 74.8 6.7e-38 154.8
Cla06g00031 . 29 139 AS2 family AT4G00210 73.0 1.5e-43 173.3
Cla05g00235 . 741 857 AS2 family AT4G00210 64.1 6.8e-41 164.5
Cla09g00749 . 12 116 AS2 family AT4G00210 65.7 3.5e-37 152.1
Cla06g00031 . 29 224 AS2 family AT2G45410 51.0 1.9e-47 186.0
Cla05g00235 . 740 862 AS2 family AT2G45410 63.7 3.1e-42 168.7
Cla06g00032 . 27 114 AS2 family AT2G45410 79.5 3.6e-38 155.2
Cla07g00086 . 26 128 AS2 family AT2G45410 67.0 1.8e-37 152.9
Cla07g00324 . 12 154 AS2 family AT5G06080 60.3 1.5e-43 172.9
Cla09g00064 . 31 138 AS2 family AT3G13850 75.9 6.8e-43 171.4
Cla05g01250 . 1 166 AS2 family AT1G68510 64.4 4.5e-59 224.9
Cla06g01470 . 68 226 AS2 family AT1G68510 61.8 1.1e-54 210.3
Cla05g02297 . 1 171 AS2 family AT1G68510 58.9 4.5e-51 198.4
Cla01g01703 . 1 104 AS2 family AT1G68510 64.4 8.0e-40 161.0
Cla05g02100 . 71 191 AS2 family AT1G68510 59.3 2.6e-38 156.0
Cla05g01250 . 1 302 AS2 family AT1G67100 50.2 2.3e-71 265.8
Cla06g01470 . 68 207 AS2 family AT1G67100 72.5 1.4e-60 229.9
Cla05g02297 . 1 132 AS2 family AT1G67100 68.6 5.3e-52 201.4
Cla01g01703 . 1 110 AS2 family AT1G67100 67.3 1.8e-44 176.4
Cla05g02100 . 71 180 AS2 family AT1G67100 62.7 1.8e-39 159.8
Cla05g01250 . 1 302 AS2 family AT3G02550 55.6 9.9e-79 290.4
Cla06g01470 . 68 230 AS2 family AT3G02550 69.5 5.2e-64 241.5
Cla05g02297 . 1 141 AS2 family AT3G02550 63.4 2.0e-47 186.4
Cla01g01703 . 1 136 AS2 family AT3G02550 55.1 5.3e-40 161.8
Cla05g02100 . 71 180 AS2 family AT3G02550 62.7 9.3e-37 151.0
Cla01g01703 . 1 235 AS2 family AT5G67420 58.8 9.4e-71 263.8
Cla05g02100 . 71 187 AS2 family AT5G67420 70.1 4.2e-47 185.3
Cla05g01250 . 3 112 AS2 family AT5G67420 68.2 1.2e-44 177.2
Cla06g01470 . 70 179 AS2 family AT5G67420 61.8 2.3e-40 162.9
Cla05g02297 . 3 113 AS2 family AT5G67420 62.5 4.3e-39 158.7
Cla01g01703 . 1 234 AS2 family AT3G49940 60.5 5.4e-71 264.6
Cla05g01250 . 3 157 AS2 family AT3G49940 52.9 5.1e-45 178.3
Cla06g01470 . 70 179 AS2 family AT3G49940 62.7 1.7e-40 163.3
Cla05g02297 . 3 113 AS2 family AT3G49940 62.5 7.9e-38 154.5
Cla01g01703 . 1 235 AS2 family AT4G37540 57.1 9.3e-68 253.8
Cla05g01250 . 3 113 AS2 family AT4G37540 65.8 8.8e-42 167.5
Cla06g01470 . 70 180 AS2 family AT4G37540 63.1 4.8e-40 161.8
Cla05g02297 . 3 126 AS2 family AT4G37540 56.5 1.7e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009687 1 1 2 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61706 PF03195 LOB 1.20E-34 No_clan Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla09g00749 Cla_Chr09 FPKM 8.681818 9.795897 6.539572 7.251576 20.333996 22.050367 19.352448 9.665145 9.170229 9.065657