Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla09g00789 | ATGGATGAAGATTTTGATATCCCTGCTGCCGCTGACATGAACGAGGACTTGGATCTTCCTGATGATACCATAGCTCTCAAGGTTGGGGAGGAGAAAGAAATTGGAAATCAAGGCTTGAAGAAGAAGCTTCTCAAAGAAGGTGAAGGATGGGTAACTCCTGAAAATGGCGATGAGGTTGAAGTTCACTATACTGGGACTTTGCTTGATGGGACTCAGTTTGATTCCAGCCGCGATCGTGGAACCCCGTTTAAGTTCACTCTTGGTCAAGGACAAGTGATCAAAGGATGGGATTTGGGTATCAAAACAATGAAGAAAAATGAAAAAGCTCTTTTTACCATTCCTCCTGATTTGGCATATGGTGAATCTGGCTCCCCACCAACCATTCCTCCTAGTGCGACATTGCAGTTCGATGTCGAGTTACTATCTTGGACAAGCGTTAAGGACATATGTAAGGATGGAGGAATATTCAAGAAGATCCTAACTGAAGGGGACAAATGGGATAATCCAAAGGACCTTGATGAAGTGCTAGTCAATTTTGAAGCTAAGCTAGAAGATGGAACACTTGTTGCAAAAGCTGATGGAGTGGAATTCACCGTTGGGGATGGTTACTTTTGCCCTGCTCTCGCAAAGGCTGTAAAAACCATGAAGATAGGTGAAAAGGCACTCCTCACAGTGAAGCCACAATATGGGTTTGGGGAGAAAGGTAAATCAGCCTCTAGTAATGAAGGTGCAGTTCCACCAAATGCATCCCTCGATATTACTTTGGAGTTGGTATCTTGGAAGACTGTTTCAGAAGTTACCCCTGACAAAAAGGTTATCAAGAAAATTCTGAAAGAAGGAGAAGGTTATGAGAAGCCAAATGACGGAGCCATTGTCAAAGTGAAATTGATTGGGAAGTTGGGAGATGGCAAGATATTTTTGAGGAAGGGATATGATGATGGTGAAGAGCCATTTGAGTTTAAAACAGACGAGGAACAAGTGATTGATGGCCTCGACAAAGCTGTGGCGACAATGAAGAAAGGTGAGATAGCCTTGCTGACAATAGCACCAGAGTATGCTTTTGGTTCGTCTGAGTCACAACAGGATTTGGCTATAGTTCCTCCAAACTCAACTGTGAATTACGAGGTTGAGCTTGTGGCTTTTGACAAGGAGAAAGAGTCATGGGATATGAATAACCAGGAAAAGATTGAAGCTGCTGGTAAAAAGAAGGAAGAAGGAAATGTGTTGTTCAAGTCTGGAAAATTTGCTAGAGCTTCCAAGAGATATGAGAAGGCTGTGAAGTTCATTGAATACGATTCTTCATTTAGTGAAGAAGAGAAAAAGCAGGCTAAGGCATTGAAAGTTGCATGCAATTTGAACAATGCGGCTTGTAAATTGAAGCTAAAGATGTACAACGAGGCAGAGAAATTGTGCACCAAGGTGCTAGAACTTGAGAGTTCAAATGTTAAGGCTCTCTATAGAAGGGCTCAAGCATATATCCAACTAGCTGACTTGGATTTAGCTGAATTTGACATCAAGAAGGCTCTCGATATCGATCCGAATAACAGGGATGTGAAATTGGAATACAAAACTCTGAAGGAGAAGGTGAAGGAATACAATAAAAAGGATGCCAAGTTTTACGGCAACATGTTTGCCAAAATGAAGAAAGTAGAATCTGCCTAA | 1662 | 41.88 | MDEDFDIPAAADMNEDLDLPDDTIALKVGEEKEIGNQGLKKKLLKEGEGWVTPENGDEVEVHYTGTLLDGTQFDSSRDRGTPFKFTLGQGQVIKGWDLGIKTMKKNEKALFTIPPDLAYGESGSPPTIPPSATLQFDVELLSWTSVKDICKDGGIFKKILTEGDKWDNPKDLDEVLVNFEAKLEDGTLVAKADGVEFTVGDGYFCPALAKAVKTMKIGEKALLTVKPQYGFGEKGKSASSNEGAVPPNASLDITLELVSWKTVSEVTPDKKVIKKILKEGEGYEKPNDGAIVKVKLIGKLGDGKIFLRKGYDDGEEPFEFKTDEEQVIDGLDKAVATMKKGEIALLTIAPEYAFGSSESQQDLAIVPPNSTVNYEVELVAFDKEKESWDMNNQEKIEAAGKKKEEGNVLFKSGKFARASKRYEKAVKFIEYDSSFSEEEKKQAKALKVACNLNNAACKLKLKMYNEAEKLCTKVLELESSNVKALYRRAQAYIQLADLDLAEFDIKKALDIDPNNRDVKLEYKTLKEKVKEYNKKDAKFYGNMFAKMKKVESA | 553 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 7983284 | 7987404 | + | ClCG09G008490.2 | Cla09g00789 | 280209 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla09g00789 | 553 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 169 | 257 | IPR001179 | GO:0003755 | |
| Cla09g00789 | 553 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 283 | 379 | IPR001179 | GO:0003755 | |
| Cla09g00789 | 553 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 51 | 141 | IPR001179 | GO:0003755 | |
| Cla09g00789 | 553 | SUPERFAMILY | FKBP-like | 148 | 264 | - | - | |
| Cla09g00789 | 553 | SUPERFAMILY | TPR-like | 387 | 547 | IPR011990 | GO:0005515 | |
| Cla09g00789 | 553 | PANTHER | PEPTIDYLPROLYL ISOMERASE | 381 | 552 | - | - | |
| Cla09g00789 | 553 | PANTHER | PEPTIDYLPROLYL ISOMERASE | 1 | 268 | - | - | |
| Cla09g00789 | 553 | PANTHER | PEPTIDYLPROLYL ISOMERASE | 271 | 381 | - | - | |
| Cla09g00789 | 553 | SUPERFAMILY | FKBP-like | 264 | 399 | - | - | |
| Cla09g00789 | 553 | Gene3D | - | 31 | 147 | IPR046357 | GO:0003755 | |
| Cla09g00789 | 553 | Gene3D | - | 262 | 383 | IPR046357 | GO:0003755 | |
| Cla09g00789 | 553 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 56 | 144 | IPR001179 | GO:0003755 | |
| Cla09g00789 | 553 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 289 | 382 | IPR001179 | GO:0003755 | |
| Cla09g00789 | 553 | Gene3D | Tetratricopeptide repeat domain | 385 | 542 | IPR011990 | GO:0005515 | |
| Cla09g00789 | 553 | SUPERFAMILY | FKBP-like | 33 | 148 | - | - | |
| Cla09g00789 | 553 | Coils | Coil | 515 | 535 | - | - | |
| Cla09g00789 | 553 | Gene3D | - | 148 | 261 | IPR046357 | GO:0003755 | |
| Cla09g00789 | 553 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 172 | 261 | IPR001179 | GO:0003755 | |
| Cla09g00789 | 553 | SMART | tpr_5 | 399 | 432 | IPR019734 | GO:0005515 | |
| Cla09g00789 | 553 | SMART | tpr_5 | 448 | 481 | IPR019734 | GO:0005515 | |
| Cla09g00789 | 553 | SMART | tpr_5 | 482 | 515 | IPR019734 | GO:0005515 | |
| Cla09g00789 | 553 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 381 | 552 | - | - | |
| Cla09g00789 | 553 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 271 | 381 | - | - | |
| Cla09g00789 | 553 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 1 | 268 | - | - | |
| Cla09g00789 | 553 | Pfam | Tetratricopeptide repeat | 482 | 515 | IPR001440 | GO:0005515 | |
| Cla09g00789 | 553 | ProSiteProfiles | TPR repeat profile. | 482 | 515 | IPR019734 | GO:0005515 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla05g00768 | Cla-Chr5:7316350 | Cla09g00789 | Cla-Chr9:7983284 | 0 | dispersed | |
| Cla05g00809 | Cla-Chr5:7895044 | Cla09g00789 | Cla-Chr9:7983284 | 9.82E-09 | dispersed | |
| Cla07g01433 | Cla-Chr7:31527030 | Cla09g00789 | Cla-Chr9:7983284 | 1.10E-11 | dispersed | |
| Cla09g00789 | Cla-Chr9:7983284 | Cla10g01170 | Cla-Chr10:26274891 | 1.44E-08 | dispersed | |
| Cla09g00788 | Cla-Chr9:7975359 | Cla09g00789 | Cla-Chr9:7983284 | 4.35E-06 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla09g00789 | K09571 | - | csv:101214513 | 1046.96 |