Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla09g00813 AAAACAAATATTAGAATTATAGGGCTACCAAAGGAACTTCCCTTCTCTCTTTATAACCCACCAACCCTCTCTGCCTCTCTTCACAACTCTTCTCATTTCCGAGCTATGGAAAACACTAAACTTTCATTACCTCTCTTTGCTGCTTTACTCCTCACAAATGCTATTGTTGTTTTAGCCAATTCCAATGAGAATAGTGACATGAATAATAACTCGAGTGTCATAGAAAACTCATGTGCCATTACTCTTTATCCTCAACTATGTCAATCAACAATATACTCCATCGTCGGAACATCCAACTTGTTGAGTTTGAAAGATATTGTTGAAGTGTCATTGAGTGTTGCTGTTGATGCAGCTAAGCATAACTACAAAAGCATCAACAAACTTTGGATGTCACTTAATGATGTTAGTAAACGAGACAAGATTGCGCTTCGTGATTGTGTGGAAACCACAGACAGGGCGATTTATGAACTTCACAAGGCCGTAGAGGATCTTCGTGAGTATCCCAACAAGAAATCTCTTACCTTGTACGCTGATGACCTCAAAACCTTTCTCAGTTCTGCCATTACTAATCAGGAGACTTGTTTGGAGGGATTGTCACATGAGAAAAGGGTGTTGAAGCTGATTGAAAGCACACATATTCACGTCACAAAGTTGTGTAGTAATACATTGGCTTTGGTTAAGAAATTGACACACACTCATTTTACAAATCAAAAAACCAATAAAATAACCTCTGACCACCCCACAATTGTTCTCTTTTCCCACCCTGTCGATCAGGAGGAAGGTGAGAATAGAGGAATTAGGGAGGATTTAGAAGACGGAATAAAGTGGCCAAAATGGATGGCGAGCCGTGACCGGAGGCTTTTGGAGTCATCGTACGAAGCTACGGCGGACGTGGTGGTGGCGGCGGATGGAAGTGGAAATTATAAAACGGTGTCGGAGGCGGTGGCGGCGGCGCCGAGTAAGAGCAGCAAAAGATATGTAATAAGAATAAAGGGTGGAGTTTACAAGGAAAATGTTGATGTGCCAAGTAGTAAAACCAATATTATGTTTTGGGGAGATGGAAGATCCAACACCATTATCACTGCTAGCAGAAGTGTTGGGGGTGGCAGTACAACCTTCAATTCCGCCACAGTTGCTGCTGTGGGGGATGGATTTTTAGCTCGGGATATAACCTTTCAAAACACAGCAGGAGCAGCCAATGACCAAGCTGTAGCTCTCCGTGTTGGGTCAGATCGCTCAGCCTTCTACCGTTGTGGCATGCTAGCCTACCAAGACACTCTCTACGTCCATTCAAACCGTCAGTTCTTCGTCAACTGCGTCGTTGCAGGCACAGTCGATTTCATCTTCGGAAACGCAGCAGTCGTATTCCAAAACTCCGACCTCACCCCTCGCAAACCAGGCCCTAAGCAACAGAACATGGTCACAGCACAAGGAAGAACTGACCCGAATCAAAACACGGGAATCGTGATCCAAAAGTGTAAAATAAAAGCGACGTCGGACTTGGAGCCGGTGATAAAAGAATTCCCAAGCTTCCTTGGGAGGCCATGGAAGGATTATGCTAGGGTTGTGGTAATGCAAACGGACATAACCAATGTGATAGACTCAAAAGGGTGGGCGCCATGGGGTAGTGAAATAAAGAAACCCTACTTTGCGGAATATGATAATAATGGAGCTGGAGCCAATACTTGTTGTAGAGTGACATGGTCTACAATTATTAATGCAGCTCAAGCTAAGACCTTTACGGCTGAACCATTCATAGATGGTGCTAATTGGCTCCCATCCACTGGCTTCCCCTATCAGCTTGGCCTCTAA 1812 44.21 KTNIRIIGLPKELPFSLYNPPTLSASLHNSSHFRAMENTKLSLPLFAALLLTNAIVVLANSNENSDMNNNSSVIENSCAITLYPQLCQSTIYSIVGTSNLLSLKDIVEVSLSVAVDAAKHNYKSINKLWMSLNDVSKRDKIALRDCVETTDRAIYELHKAVEDLREYPNKKSLTLYADDLKTFLSSAITNQETCLEGLSHEKRVLKLIESTHIHVTKLCSNTLALVKKLTHTHFTNQKTNKITSDHPTIVLFSHPVDQEEGENRGIREDLEDGIKWPKWMASRDRRLLESSYEATADVVVAADGSGNYKTVSEAVAAAPSKSSKRYVIRIKGGVYKENVDVPSSKTNIMFWGDGRSNTIITASRSVGGGSTTFNSATVAAVGDGFLARDITFQNTAGAANDQAVALRVGSDRSAFYRCGMLAYQDTLYVHSNRQFFVNCVVAGTVDFIFGNAAVVFQNSDLTPRKPGPKQQNMVTAQGRTDPNQNTGIVIQKCKIKATSDLEPVIKEFPSFLGRPWKDYARVVVMQTDITNVIDSKGWAPWGSEIKKPYFAEYDNNGAGANTCCRVTWSTIINAAQAKTFTAEPFIDGANWLPSTGFPYQLGL 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8308978 8314649 + ClCG09G008730.1 Cla09g00813 280233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla09g00813 603 MobiDBLite consensus disorder prediction 461 481 - -
Cla09g00813 603 ProSitePatterns Pectinesterase signature 1. 322 341 IPR018040 -
Cla09g00813 603 ProSitePatterns Pectinesterase signature 2. 441 450 IPR033131 -
Cla09g00813 603 TIGRFAM PME_inhib: pectinesterase inhibitor domain 46 230 IPR006501 GO:0004857
Cla09g00813 603 Gene3D Invertase/pectin methylesterase inhibitor family protein 68 231 IPR035513 -
Cla09g00813 603 SUPERFAMILY Pectin lyase-like 294 602 IPR011050 -
Cla09g00813 603 Pfam Pectinesterase 297 588 IPR000070 GO:0030599|GO:0042545
Cla09g00813 603 PANTHER PECTINESTERASE 37 602 - -
Cla09g00813 603 Pfam Plant invertase/pectin methylesterase inhibitor 73 225 IPR006501 GO:0004857
Cla09g00813 603 PANTHER PECTINESTERASE 37 602 - -
Cla09g00813 603 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 72 230 IPR035513 -
Cla09g00813 603 SMART PMEI_2 69 225 IPR006501 GO:0004857
Cla09g00813 603 Gene3D - 291 603 IPR012334 -
Cla09g00813 603 CDD PMEI-like_3 77 230 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g01358 Cla-Chr7:30728436 Cla09g00813 Cla-Chr9:8308978 9.80E-23 dispersed
Cla09g00813 Cla-Chr9:8308978 Cla09g00512 Cla-Chr9:4846710 2.15E-135 dispersed
Cla09g00813 Cla-Chr9:8308978 Cla09g00131 Cla-Chr9:1312134 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla09g00813 K01051 - csv:101221055 847.425